Table showing results for February 2025

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UUQ	26800	2025-02-11	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.117	4.43	10.0	0.23	30.63	0.02	1.884	46.76	13.19	67.9	30.4	1.8	-10.54	0.66	0.73	0.90	4.29	4760	364	98	0	98	0	0	logfile
✔	7DA4	30622	2025-02-10	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.93	0.0	0.04	11.82	0.00	2.605	10.10	0.00	20.0	80.0	0.0	-5.69	3.09	0.39	0.61	—	507	66	3	0	0	0	0	logfile
✔	3J2P	5499	2025-02-14	2012-11-30	3.6	3.28	—	3.4	0.010	1.92	0.0	0.12	17.50	0.02	2.155	110.32	20.13	29.7	46.3	24.1	-7.75	0.42	0.79	1.08	3.3	0.004	0.91	0.0	0.04	17.97	0.00	2.151	72.13	12.58	22.0	74.2	3.7	-4.53	0.84	0.39	0.73	1.07	9890	1134	8	0	6	0	1086	logfile
✔	7V49	31704	2025-02-10	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.77	0.0	0.06	15.14	0.00	2.628	11.63	5.69	16.7	83.3	0.0	-5.85	1.12	0.32	0.71	5.16	1221	180	3	0	0	0	0	logfile
✔	7DWV	30887	2025-02-10	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.024	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.77	0.0	0.05	17.76	0.00	2.493	15.42	19.44	23.6	76.4	0.0	-6.15	1.11	0.40	0.75	2.35	2064	258	6	0	0	0	0	logfile
✔	7CYE	30498	2025-02-12	2020-09-03	3.54	3.31	—	3.7	0.010	1.42	0.0	0.07	12.31	0.01	2.232	4.09	1.30	12.4	87.0	0.6	-7.38	0.56	0.76	2.20	3.7	0.003	0.89	0.0	0.04	14.82	0.01	2.485	6.84	2.86	10.0	90.0	0.0	-2.62	0.83	0.60	0.81	2.46	7263	978	3	0	0	0	0	logfile
✔	6N1H	8902	2025-02-14	2018-11-08	3.17	3.22	—	3.2	0.006	1.13	0.0	0.06	12.23	0.01	0.657	32.07	3.97	7.4	92.6	0.0	-7.22	0.39	0.46	0.05	3.2	0.003	0.73	0.0	0.04	16.82	0.00	2.423	8.58	1.44	4.2	95.8	0.0	0.27	2.37	0.61	0.83	1.49	10991	1328	16	0	0	0	0	logfile
✔	8GQY	34203	2025-02-13	2022-08-31	3.4	2.82	3.40	3.6	0.005	0.66	0.0	0.04	12.58	0.00	2.117	7.22	5.67	3.6	96.4	0.0	-7.14	0.69	0.86	3.37	3.6	0.003	0.95	1.0	0.04	15.10	0.00	2.456	5.74	3.18	1.8	98.2	0.0	-0.59	1.39	0.65	0.86	2.05	9515	1265	5	0	0	0	0	logfile
✘	6RJU	4906	2025-02-10	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.94	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	6HQE	0252	2025-02-13	2018-09-24	4.4	4.34	—	4.4	0.009	1.25	0.0	0.06	9.67	0.01	2.307	6.79	0.00	4.8	95.2	0.0	-7.05	0.65	0.85	—	4.4	0.004	0.79	0.0	0.04	12.00	0.01	2.499	16.93	0.00	4.5	95.5	0.0	1.25	0.97	0.64	0.85	—	9360	1196	52	0	0	0	0	logfile
✔	8iKP	35519	2025-02-10	2023-02-28	2.98	2.59	2.85	3.0	0.013	1.99	2.0	0.05	15.08	0.00	1.973	20.34	0.00	15.6	84.4	0.0	-7.03	0.26	0.65	5.92	3.0	0.041	3.25	2.0	0.13	21.90	0.01	2.252	13.41	12.50	35.6	63.1	1.2	-6.55	2.00	0.31	0.77	3.42	2048	288	32	0	0	0	0	logfile
✔	8W6N	37329	2025-02-12	2023-08-29	3.2	3.38	3.23	3.4	0.004	0.95	0.0	0.05	13.43	0.01	2.310	3.10	0.12	7.1	92.8	0.1	-7.03	0.66	0.84	2.74	3.4	0.003	0.69	0.0	0.04	15.20	0.01	2.324	5.75	2.99	5.9	94.1	0.0	-1.52	0.47	0.67	0.86	2.34	7616	975	4	0	3	0	0	logfile
✔	8W6H	37323	2025-02-12	2023-08-28	3.1	3.21	3.03	3.2	0.011	1.23	1.0	0.07	13.79	0.01	2.205	4.85	0.76	9.5	90.3	0.2	-7.00	0.70	0.85	2.74	3.2	0.003	0.73	0.0	0.04	14.48	0.00	2.241	4.91	3.15	5.5	94.5	0.0	-0.39	0.46	0.69	0.86	1.64	7268	923	4	0	6	0	0	logfile
✔	8W6G	37322	2025-02-12	2023-08-28	3.3	3.59	3.21	3.6	0.008	1.06	2.0	0.06	13.36	0.01	2.313	3.18	0.00	7.3	92.7	0.0	-6.99	0.67	0.89	2.46	3.6	0.003	0.70	0.0	0.04	14.49	0.01	2.620	3.48	1.83	5.7	94.3	0.0	0.70	1.60	0.66	0.89	1.50	8314	1054	4	0	6	0	0	logfile
✔	6GGS	4399	2025-02-11	2018-05-03	3.94	3.85	—	3.8	0.006	1.15	0.0	0.07	14.10	0.00	2.060	14.46	1.27	4.8	95.2	0.0	-6.91	0.49	0.77	1.98	3.8	0.004	1.08	0.0	0.05	17.66	0.00	2.492	20.40	4.56	3.1	96.9	0.0	-3.10	3.52	0.50	0.77	1.79	6880	860	10	0	0	0	0	logfile
✔	8GA0	29883	2025-02-11	2023-02-22	3.5	3.76	3.70	3.7	0.004	0.84	0.0	0.05	14.18	0.01	2.274	4.15	0.00	4.8	95.2	0.0	-6.86	0.65	0.78	1.71	3.7	0.004	0.69	0.0	0.04	15.95	0.00	2.494	7.27	3.47	4.0	96.0	0.0	-2.58	0.47	0.61	0.77	1.67	6598	882	2	0	0	0	0	logfile
✔	7XQ1	33388	2025-02-10	2022-05-06	3.4	3.32	3.36	3.5	0.010	1.05	1.0	0.06	13.48	0.01	2.320	6.82	0.58	2.8	97.2	0.0	-6.81	0.47	0.78	3.56	3.5	0.003	0.63	0.0	0.04	14.63	0.00	2.579	6.07	2.90	2.3	97.7	0.0	0.61	1.18	0.51	0.82	2.10	3302	400	2	0	2	0	0	logfile
✔	6X3F	22021	2025-02-13	2020-05-21	3.03	3.23	—	3.3	0.006	0.93	0.0	0.06	14.72	0.01	2.351	3.78	0.00	5.0	95.0	0.0	-6.78	0.58	0.85	3.24	3.3	0.003	0.64	0.0	0.04	15.89	0.00	2.532	6.00	1.75	4.1	95.9	0.0	-0.15	0.96	0.54	0.85	2.08	9366	1227	6	0	3	0	0	logfile
✔	7XPZ	33386	2025-02-10	2022-05-06	3.4	3.31	3.34	3.6	0.005	0.73	0.0	0.05	12.26	0.01	2.311	6.57	0.58	5.5	94.5	0.0	-6.77	0.49	0.79	3.43	3.6	0.003	0.66	0.0	0.04	14.09	0.00	2.571	5.35	2.02	4.5	95.5	0.0	-0.83	1.14	0.44	0.77	2.37	3227	402	1	0	0	0	0	logfile
✔	7XQ0	33387	2025-02-10	2022-05-06	3.0	2.77	3.09	3.2	0.014	1.26	0.0	0.06	13.01	0.01	2.232	7.04	0.86	1.5	98.5	0.0	-6.72	0.49	0.79	4.03	3.2	0.003	0.64	0.0	0.04	13.98	0.00	2.600	6.29	2.02	1.3	98.7	0.0	1.39	1.10	0.46	0.79	2.95	3320	402	2	0	2	0	0	logfile

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