Table showing results for June 2020

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6Y7C	10713	2020-06-28	2020-02-28	3.8	5.42	3.84	2.8	0.015	1.52	1.0	0.06	19.86	0.01	0.193	10.31	1.00	14.3	85.4	0.3	-5.44	0.89	0.71	0.41	2.6	0.023	1.80	0.0	0.08	22.83	0.01	1.319	109.02	0.02	29.2	70.3	0.5	-5.77	3.35	0.93	0.78	0.08	79690	5381	34	1735	0	0	0	logfile
✔	6M1H	30047	2020-06-28	2020-02-26	3.6	3.71	—	3.6	0.008	1.19	0.0	0.06	18.52	0.01	1.782	9.47	0.21	6.1	93.9	0.0	-4.70	0.82	0.79	1.90	3.6	0.013	1.13	0.0	0.06	18.05	0.01	2.070	28.75	0.00	13.7	86.3	0.0	-3.64	1.33	0.83	0.81	2.17	9036	1139	6	0	0	0	0	logfile
✔	6M1i	30048	2020-06-28	2020-02-26	3.5	3.33	—	3.2	0.008	1.22	0.0	0.06	18.70	0.01	2.210	8.41	0.32	7.1	92.9	0.0	-4.80	0.83	0.80	1.81	3.2	0.003	0.69	0.0	0.05	18.22	0.00	2.154	13.57	0.11	6.6	93.4	0.0	-1.85	0.72	0.82	0.77	2.11	8916	1126	6	0	0	0	0	logfile
✔	6M18	30040	2020-06-28	2020-02-25	2.9	3.12	—	3.0	0.008	1.30	2.0	0.06	20.25	0.01	2.119	8.50	2.94	8.0	90.5	1.5	-6.05	0.68	0.71	3.35	3.0	0.012	0.95	0.0	0.06	18.85	0.01	1.810	8.46	0.08	9.9	90.0	0.1	-2.07	2.48	0.78	0.88	3.43	22534	2708	12	0	44	30	0	logfile
✔	6M1D	30041	2020-06-28	2020-02-25	4.5	6.53	—	4.7	0.006	1.33	0.0	0.06	23.04	0.01	2.043	20.45	9.51	9.3	89.8	0.9	-5.09	0.69	0.76	—	4.7	0.006	0.95	0.0	0.05	20.01	0.01	1.899	44.59	0.00	15.6	84.0	0.4	-3.23	1.45	0.70	0.76	—	21776	2706	4	0	0	0	0	logfile
✔	6Y5R	10703	2020-06-28	2020-02-25	3.76	3.86	3.73	3.8	0.004	0.95	0.0	0.04	12.80	0.00	2.147	7.75	0.07	4.4	95.6	0.0	-2.26	0.68	0.85	2.03	3.8	0.005	0.69	0.0	0.04	13.93	0.00	2.120	11.03	0.22	6.7	93.3	0.0	-0.04	0.46	0.68	0.86	2.68	13592	1758	4	0	8	0	0	logfile
✔	6VYB	21457	2020-06-28	2020-02-25	3.2	3.72	—	3.6	0.014	1.27	1.0	0.09	11.09	0.01	2.299	0.48	0.13	2.4	97.5	0.1	0.50	0.77	0.78	2.94	3.6	0.007	0.71	0.0	0.05	13.85	0.00	2.158	7.47	0.00	5.4	94.6	0.0	-0.66	0.71	0.77	0.81	3.28	22365	2875	6	0	59	0	0	logfile
✔	6VXX	21452	2020-06-28	2020-02-25	2.8	3.32	—	3.2	0.016	1.25	0.0	0.09	11.47	0.01	2.389	0.71	0.23	2.4	97.6	0.0	0.27	0.73	0.75	3.36	3.2	0.006	0.75	0.0	0.05	14.39	0.00	2.094	9.41	0.00	5.0	95.0	0.0	-1.12	1.29	0.71	0.78	3.18	23694	2916	6	0	63	0	0	logfile
✔	6M17	30039	2020-06-28	2020-02-24	2.9	3.18	—	3.4	0.008	1.28	0.0	0.08	21.11	0.01	1.884	8.24	1.85	8.7	89.7	1.6	-6.10	0.46	0.38	-0.35	3.1	0.009	0.93	0.0	0.06	19.70	0.01	1.908	11.12	0.00	10.1	89.9	0.0	-2.55	1.05	0.69	0.84	2.51	25344	3074	14	0	46	8	0	logfile
✔	6VVo	21405	2020-06-28	2020-02-18	3.4	3.44	—	3.3	0.009	1.14	0.0	0.05	20.80	0.00	1.915	9.76	0.41	4.7	95.2	0.1	-2.93	0.87	0.85	2.75	3.3	0.005	0.68	0.0	0.04	19.65	0.00	1.929	9.31	0.00	4.4	95.6	0.0	-0.45	1.59	0.88	0.85	2.95	19668	2493	13	0	9	0	0	logfile
✔	6VV5	21391	2020-06-28	2020-02-17	3.5	3.62	3.43	3.6	0.017	1.58	0.0	0.09	11.25	0.03	2.262	4.79	1.26	1.6	98.3	0.1	0.88	0.74	0.84	3.28	3.6	0.011	0.87	0.0	0.05	15.54	0.00	2.097	7.78	0.00	7.4	92.6	0.0	-1.50	1.39	0.76	0.86	3.27	26874	3294	6	0	102	0	0	logfile
✔	6VU8	21388	2020-06-28	2020-02-14	4.14	4.31	4.17	4.2	0.007	1.30	0.0	0.05	24.86	0.01	2.262	7.78	0.00	9.9	90.1	0.0	-4.91	0.72	0.78	—	4.2	0.008	1.01	0.0	0.05	23.45	0.01	2.102	27.17	0.00	13.3	86.7	0.0	-3.62	0.69	0.75	0.81	—	5249	669	2	0	0	0	0	logfile
✔	6VU5	21387	2020-06-28	2020-02-14	3.5	3.58	3.38	3.5	0.007	1.24	0.0	0.06	27.27	0.01	2.230	8.37	0.00	9.0	91.0	0.0	-4.94	0.72	0.75	1.82	3.5	0.011	1.02	0.0	0.06	28.77	0.01	2.116	23.49	0.00	13.5	86.5	0.0	-3.97	0.53	0.74	0.78	2.32	4657	576	2	0	27	0	0	logfile
✔	6Y1Z	10673	2020-06-28	2020-02-14	2.82	3.47	—	3.4	0.007	1.00	0.0	0.24	15.06	0.00	2.325	3.46	2.49	2.4	97.6	0.0	-1.37	0.66	0.79	2.66	3.3	0.009	1.01	0.0	0.12	15.78	0.01	2.079	5.03	0.33	6.8	93.2	0.0	-0.11	1.23	0.66	0.79	3.23	16610	1930	10	0	35	0	0	logfile
✔	6VTK	21380	2020-06-28	2020-02-12	2.82	3.35	—	3.3	0.006	1.12	0.0	0.05	11.28	0.01	2.287	3.10	0.00	3.2	96.8	0.0	-4.44	0.71	0.81	4.37	3.3	0.007	0.77	0.0	0.05	15.47	0.00	2.117	5.54	0.00	3.7	96.3	0.0	-1.03	1.20	0.71	0.82	4.22	10686	1338	6	0	6	0	0	logfile
✔	6VTL	21381	2020-06-28	2020-02-12	3.65	4.16	—	4.0	0.005	1.13	0.0	0.05	19.69	0.01	2.306	5.90	0.00	3.4	96.6	0.0	-4.96	0.68	0.72	2.51	4.0	0.014	1.16	0.0	0.06	19.52	0.01	1.997	24.35	0.00	12.8	86.9	0.2	-3.78	0.58	0.73	0.80	2.51	10242	1338	6	0	6	0	0	logfile
✔	6VSJ	21377	2020-06-28	2020-02-11	3.94	4.46	—	4.3	0.009	1.22	0.0	0.06	17.80	0.01	2.212	9.44	0.95	9.6	90.3	0.1	-4.11	0.83	0.81	1.80	4.3	0.009	0.96	0.0	0.05	17.67	0.01	1.969	24.44	0.03	16.4	83.6	0.0	-3.45	1.62	0.84	0.82	2.04	28752	3687	12	0	12	0	0	logfile
✔	6VSC	21376	2020-06-28	2020-02-11	2.6	2.97	—	2.9	0.014	2.36	75.0	0.15	20.78	0.01	2.153	16.09	7.73	3.9	96.1	0.0	-1.96	0.91	0.90	3.76	2.8	0.012	0.89	0.0	0.05	16.74	0.01	2.073	21.17	0.00	1.4	98.6	0.0	-0.20	1.53	0.86	0.83	4.24	9670	1175	5	0	0	0	0	logfile
✔	6Y1A	10669	2020-06-28	2020-02-11	4.2	3.60	1.84	4.3	0.004	0.60	0.0	0.07	9.42	0.00	2.509	15.01	0.00	4.3	95.7	0.0	-4.99	0.53	0.63	—	4.2	0.007	0.89	0.0	0.04	11.39	0.00	2.023	25.07	0.00	14.4	85.6	0.0	-5.55	1.55	0.58	0.76	—	2960	400	32	0	16	0	0	logfile
✔	6VRW	21372	2020-06-28	2020-02-10	3.71	4.24	3.76	4.0	0.006	1.13	0.0	0.06	20.49	0.00	2.301	4.29	0.40	7.8	92.2	0.0	-4.95	0.81	0.81	2.33	4.0	0.006	0.75	0.0	0.06	21.00	0.00	2.181	11.37	0.00	9.0	91.0	0.0	-2.66	0.47	0.82	0.82	2.72	14568	1671	12	0	96	0	0	logfile

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