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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 6Y7C | 10713 | 2020-06-28 | 2020-02-28 | 3.8 | 5.42 | 3.84 | 2.8 | 0.015 | 1.52 | 1.0 | 0.06 | 19.86 | 0.01 | 0.193 | 10.31 | 1.00 | 14.3 | 85.4 | 0.3 | -5.44 | 0.89 | 0.71 | 0.41 | 2.6 | 0.023 | 1.80 | 0.0 | 0.08 | 22.83 | 0.01 | 1.319 | 109.02 | 0.02 | 29.2 | 70.3 | 0.5 | -5.77 | 3.35 | 0.93 | 0.78 | 0.08 | 79690 | 5381 | 34 | 1735 | 0 | 0 | 0 | logfile |
✔ | 6M1H | 30047 | 2020-06-28 | 2020-02-26 | 3.6 | 3.71 | — | 3.6 | 0.008 | 1.19 | 0.0 | 0.06 | 18.52 | 0.01 | 1.782 | 9.47 | 0.21 | 6.1 | 93.9 | 0.0 | -4.70 | 0.82 | 0.79 | 1.90 | 3.6 | 0.013 | 1.13 | 0.0 | 0.06 | 18.05 | 0.01 | 2.070 | 28.75 | 0.00 | 13.7 | 86.3 | 0.0 | -3.64 | 1.33 | 0.83 | 0.81 | 2.17 | 9036 | 1139 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M1i | 30048 | 2020-06-28 | 2020-02-26 | 3.5 | 3.33 | — | 3.2 | 0.008 | 1.22 | 0.0 | 0.06 | 18.70 | 0.01 | 2.210 | 8.41 | 0.32 | 7.1 | 92.9 | 0.0 | -4.80 | 0.83 | 0.80 | 1.81 | 3.2 | 0.003 | 0.69 | 0.0 | 0.05 | 18.22 | 0.00 | 2.154 | 13.57 | 0.11 | 6.6 | 93.4 | 0.0 | -1.85 | 0.72 | 0.82 | 0.77 | 2.11 | 8916 | 1126 | 6 | 0 | 0 | 0 | 0 | logfile |
✔ | 6M18 | 30040 | 2020-06-28 | 2020-02-25 | 2.9 | 3.12 | — | 3.0 | 0.008 | 1.30 | 2.0 | 0.06 | 20.25 | 0.01 | 2.119 | 8.50 | 2.94 | 8.0 | 90.5 | 1.5 | -6.05 | 0.68 | 0.71 | 3.35 | 3.0 | 0.012 | 0.95 | 0.0 | 0.06 | 18.85 | 0.01 | 1.810 | 8.46 | 0.08 | 9.9 | 90.0 | 0.1 | -2.07 | 2.48 | 0.78 | 0.88 | 3.43 | 22534 | 2708 | 12 | 0 | 44 | 30 | 0 | logfile |
✔ | 6M1D | 30041 | 2020-06-28 | 2020-02-25 | 4.5 | 6.53 | — | 4.7 | 0.006 | 1.33 | 0.0 | 0.06 | 23.04 | 0.01 | 2.043 | 20.45 | 9.51 | 9.3 | 89.8 | 0.9 | -5.09 | 0.69 | 0.76 | — | 4.7 | 0.006 | 0.95 | 0.0 | 0.05 | 20.01 | 0.01 | 1.899 | 44.59 | 0.00 | 15.6 | 84.0 | 0.4 | -3.23 | 1.45 | 0.70 | 0.76 | — | 21776 | 2706 | 4 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y5R | 10703 | 2020-06-28 | 2020-02-25 | 3.76 | 3.86 | 3.73 | 3.8 | 0.004 | 0.95 | 0.0 | 0.04 | 12.80 | 0.00 | 2.147 | 7.75 | 0.07 | 4.4 | 95.6 | 0.0 | -2.26 | 0.68 | 0.85 | 2.03 | 3.8 | 0.005 | 0.69 | 0.0 | 0.04 | 13.93 | 0.00 | 2.120 | 11.03 | 0.22 | 6.7 | 93.3 | 0.0 | -0.04 | 0.46 | 0.68 | 0.86 | 2.68 | 13592 | 1758 | 4 | 0 | 8 | 0 | 0 | logfile |
✔ | 6VYB | 21457 | 2020-06-28 | 2020-02-25 | 3.2 | 3.72 | — | 3.6 | 0.014 | 1.27 | 1.0 | 0.09 | 11.09 | 0.01 | 2.299 | 0.48 | 0.13 | 2.4 | 97.5 | 0.1 | 0.50 | 0.77 | 0.78 | 2.94 | 3.6 | 0.007 | 0.71 | 0.0 | 0.05 | 13.85 | 0.00 | 2.158 | 7.47 | 0.00 | 5.4 | 94.6 | 0.0 | -0.66 | 0.71 | 0.77 | 0.81 | 3.28 | 22365 | 2875 | 6 | 0 | 59 | 0 | 0 | logfile |
✔ | 6VXX | 21452 | 2020-06-28 | 2020-02-25 | 2.8 | 3.32 | — | 3.2 | 0.016 | 1.25 | 0.0 | 0.09 | 11.47 | 0.01 | 2.389 | 0.71 | 0.23 | 2.4 | 97.6 | 0.0 | 0.27 | 0.73 | 0.75 | 3.36 | 3.2 | 0.006 | 0.75 | 0.0 | 0.05 | 14.39 | 0.00 | 2.094 | 9.41 | 0.00 | 5.0 | 95.0 | 0.0 | -1.12 | 1.29 | 0.71 | 0.78 | 3.18 | 23694 | 2916 | 6 | 0 | 63 | 0 | 0 | logfile |
✔ | 6M17 | 30039 | 2020-06-28 | 2020-02-24 | 2.9 | 3.18 | — | 3.4 | 0.008 | 1.28 | 0.0 | 0.08 | 21.11 | 0.01 | 1.884 | 8.24 | 1.85 | 8.7 | 89.7 | 1.6 | -6.10 | 0.46 | 0.38 | -0.35 | 3.1 | 0.009 | 0.93 | 0.0 | 0.06 | 19.70 | 0.01 | 1.908 | 11.12 | 0.00 | 10.1 | 89.9 | 0.0 | -2.55 | 1.05 | 0.69 | 0.84 | 2.51 | 25344 | 3074 | 14 | 0 | 46 | 8 | 0 | logfile |
✔ | 6VVo | 21405 | 2020-06-28 | 2020-02-18 | 3.4 | 3.44 | — | 3.3 | 0.009 | 1.14 | 0.0 | 0.05 | 20.80 | 0.00 | 1.915 | 9.76 | 0.41 | 4.7 | 95.2 | 0.1 | -2.93 | 0.87 | 0.85 | 2.75 | 3.3 | 0.005 | 0.68 | 0.0 | 0.04 | 19.65 | 0.00 | 1.929 | 9.31 | 0.00 | 4.4 | 95.6 | 0.0 | -0.45 | 1.59 | 0.88 | 0.85 | 2.95 | 19668 | 2493 | 13 | 0 | 9 | 0 | 0 | logfile |
✔ | 6VV5 | 21391 | 2020-06-28 | 2020-02-17 | 3.5 | 3.62 | 3.43 | 3.6 | 0.017 | 1.58 | 0.0 | 0.09 | 11.25 | 0.03 | 2.262 | 4.79 | 1.26 | 1.6 | 98.3 | 0.1 | 0.88 | 0.74 | 0.84 | 3.28 | 3.6 | 0.011 | 0.87 | 0.0 | 0.05 | 15.54 | 0.00 | 2.097 | 7.78 | 0.00 | 7.4 | 92.6 | 0.0 | -1.50 | 1.39 | 0.76 | 0.86 | 3.27 | 26874 | 3294 | 6 | 0 | 102 | 0 | 0 | logfile |
✔ | 6VU8 | 21388 | 2020-06-28 | 2020-02-14 | 4.14 | 4.31 | 4.17 | 4.2 | 0.007 | 1.30 | 0.0 | 0.05 | 24.86 | 0.01 | 2.262 | 7.78 | 0.00 | 9.9 | 90.1 | 0.0 | -4.91 | 0.72 | 0.78 | — | 4.2 | 0.008 | 1.01 | 0.0 | 0.05 | 23.45 | 0.01 | 2.102 | 27.17 | 0.00 | 13.3 | 86.7 | 0.0 | -3.62 | 0.69 | 0.75 | 0.81 | — | 5249 | 669 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6VU5 | 21387 | 2020-06-28 | 2020-02-14 | 3.5 | 3.58 | 3.38 | 3.5 | 0.007 | 1.24 | 0.0 | 0.06 | 27.27 | 0.01 | 2.230 | 8.37 | 0.00 | 9.0 | 91.0 | 0.0 | -4.94 | 0.72 | 0.75 | 1.82 | 3.5 | 0.011 | 1.02 | 0.0 | 0.06 | 28.77 | 0.01 | 2.116 | 23.49 | 0.00 | 13.5 | 86.5 | 0.0 | -3.97 | 0.53 | 0.74 | 0.78 | 2.32 | 4657 | 576 | 2 | 0 | 27 | 0 | 0 | logfile |
✔ | 6Y1Z | 10673 | 2020-06-28 | 2020-02-14 | 2.82 | 3.47 | — | 3.4 | 0.007 | 1.00 | 0.0 | 0.24 | 15.06 | 0.00 | 2.325 | 3.46 | 2.49 | 2.4 | 97.6 | 0.0 | -1.37 | 0.66 | 0.79 | 2.66 | 3.3 | 0.009 | 1.01 | 0.0 | 0.12 | 15.78 | 0.01 | 2.079 | 5.03 | 0.33 | 6.8 | 93.2 | 0.0 | -0.11 | 1.23 | 0.66 | 0.79 | 3.23 | 16610 | 1930 | 10 | 0 | 35 | 0 | 0 | logfile |
✔ | 6VTK | 21380 | 2020-06-28 | 2020-02-12 | 2.82 | 3.35 | — | 3.3 | 0.006 | 1.12 | 0.0 | 0.05 | 11.28 | 0.01 | 2.287 | 3.10 | 0.00 | 3.2 | 96.8 | 0.0 | -4.44 | 0.71 | 0.81 | 4.37 | 3.3 | 0.007 | 0.77 | 0.0 | 0.05 | 15.47 | 0.00 | 2.117 | 5.54 | 0.00 | 3.7 | 96.3 | 0.0 | -1.03 | 1.20 | 0.71 | 0.82 | 4.22 | 10686 | 1338 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6VTL | 21381 | 2020-06-28 | 2020-02-12 | 3.65 | 4.16 | — | 4.0 | 0.005 | 1.13 | 0.0 | 0.05 | 19.69 | 0.01 | 2.306 | 5.90 | 0.00 | 3.4 | 96.6 | 0.0 | -4.96 | 0.68 | 0.72 | 2.51 | 4.0 | 0.014 | 1.16 | 0.0 | 0.06 | 19.52 | 0.01 | 1.997 | 24.35 | 0.00 | 12.8 | 86.9 | 0.2 | -3.78 | 0.58 | 0.73 | 0.80 | 2.51 | 10242 | 1338 | 6 | 0 | 6 | 0 | 0 | logfile |
✔ | 6VSJ | 21377 | 2020-06-28 | 2020-02-11 | 3.94 | 4.46 | — | 4.3 | 0.009 | 1.22 | 0.0 | 0.06 | 17.80 | 0.01 | 2.212 | 9.44 | 0.95 | 9.6 | 90.3 | 0.1 | -4.11 | 0.83 | 0.81 | 1.80 | 4.3 | 0.009 | 0.96 | 0.0 | 0.05 | 17.67 | 0.01 | 1.969 | 24.44 | 0.03 | 16.4 | 83.6 | 0.0 | -3.45 | 1.62 | 0.84 | 0.82 | 2.04 | 28752 | 3687 | 12 | 0 | 12 | 0 | 0 | logfile |
✔ | 6VSC | 21376 | 2020-06-28 | 2020-02-11 | 2.6 | 2.97 | — | 2.9 | 0.014 | 2.36 | 75.0 | 0.15 | 20.78 | 0.01 | 2.153 | 16.09 | 7.73 | 3.9 | 96.1 | 0.0 | -1.96 | 0.91 | 0.90 | 3.76 | 2.8 | 0.012 | 0.89 | 0.0 | 0.05 | 16.74 | 0.01 | 2.073 | 21.17 | 0.00 | 1.4 | 98.6 | 0.0 | -0.20 | 1.53 | 0.86 | 0.83 | 4.24 | 9670 | 1175 | 5 | 0 | 0 | 0 | 0 | logfile |
✔ | 6Y1A | 10669 | 2020-06-28 | 2020-02-11 | 4.2 | 3.60 | 1.84 | 4.3 | 0.004 | 0.60 | 0.0 | 0.07 | 9.42 | 0.00 | 2.509 | 15.01 | 0.00 | 4.3 | 95.7 | 0.0 | -4.99 | 0.53 | 0.63 | — | 4.2 | 0.007 | 0.89 | 0.0 | 0.04 | 11.39 | 0.00 | 2.023 | 25.07 | 0.00 | 14.4 | 85.6 | 0.0 | -5.55 | 1.55 | 0.58 | 0.76 | — | 2960 | 400 | 32 | 0 | 16 | 0 | 0 | logfile |
✔ | 6VRW | 21372 | 2020-06-28 | 2020-02-10 | 3.71 | 4.24 | 3.76 | 4.0 | 0.006 | 1.13 | 0.0 | 0.06 | 20.49 | 0.00 | 2.301 | 4.29 | 0.40 | 7.8 | 92.2 | 0.0 | -4.95 | 0.81 | 0.81 | 2.33 | 4.0 | 0.006 | 0.75 | 0.0 | 0.06 | 21.00 | 0.00 | 2.181 | 11.37 | 0.00 | 9.0 | 91.0 | 0.0 | -2.66 | 0.47 | 0.82 | 0.82 | 2.72 | 14568 | 1671 | 12 | 0 | 96 | 0 | 0 | logfile |