Table showing results for June 2021

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MSW	23970	2021-06-02	2021-05-12	3.76	3.93	3.60	3.8	0.009	0.66	0.0	0.05	10.62	0.00	1.933	0.71	0.00	2.5	97.3	0.2	-0.01	0.79	0.80	1.87	3.8	0.003	0.58	0.0	0.04	14.74	0.01	2.023	8.00	0.00	4.3	95.7	0.0	0.25	1.03	0.79	0.81	1.72	9881	635	1	0	3	0	4959	logfile
✔	7MSX	23971	2021-06-01	2021-05-12	3.15	3.24	3.04	3.2	0.008	0.62	0.0	0.05	10.30	0.00	2.385	0.81	0.00	1.9	98.1	0.0	0.06	0.77	0.85	3.76	3.2	0.003	0.52	0.0	0.04	15.14	0.00	2.212	4.88	0.25	2.4	97.6	0.0	1.19	1.12	0.78	0.87	3.63	3706	473	1	0	3	0	0	logfile
✔	7oF3	12868	2021-06-04	2021-05-04	2.7	3.23	2.69	3.0	0.003	0.51	0.0	0.04	14.76	0.00	1.761	5.64	0.00	3.2	96.8	0.0	1.34	0.88	0.88	3.46	3.0	0.006	0.70	0.0	0.04	16.37	0.00	1.871	11.09	1.41	3.3	96.7	0.0	0.91	1.22	0.89	0.90	3.18	101226	8627	61	1442	63	0	0	logfile
✘	7MKL	23898	2021-06-03	2021-04-24	3.2	2.50	—	2.1	0.004	0.82	0.0	0.06	12.45	0.01	2.162	10.10	0.00	2.9	97.1	0.0	0.35	0.64	0.58	0.96	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25597	3164	23	0	63	0	0	logfile
✔	7MKM	23899	2021-06-01	2021-04-24	3.16	2.47	—	2.2	0.003	0.80	0.0	0.05	13.76	0.01	2.304	8.33	0.00	2.2	97.8	0.0	-0.82	0.52	0.59	1.64	2.0	0.003	0.71	0.0	0.04	15.47	0.00	2.311	9.77	0.29	5.2	94.8	0.0	-1.48	0.69	0.53	0.61	1.35	3192	406	3	0	1	0	0	logfile
✔	7MJK	23876	2021-06-04	2021-04-20	2.73	3.61	—	2.9	0.004	0.78	0.0	0.05	12.93	0.01	2.307	2.87	0.00	3.0	97.0	0.0	-0.85	0.86	0.82	2.65	2.9	0.004	0.67	0.0	0.04	14.47	0.00	2.122	9.50	0.79	2.2	97.8	0.0	0.49	1.22	0.88	0.85	2.64	34878	4389	30	0	60	0	0	logfile
✔	7MJi	23874	2021-06-01	2021-04-20	2.81	3.32	—	3.2	0.006	0.80	0.0	0.05	12.43	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.004	0.59	0.0	0.04	15.82	0.00	2.328	7.73	0.74	2.2	97.8	0.0	0.17	1.05	0.58	0.86	4.43	2522	320	3	0	1	0	0	logfile
✘	7MJH	23873	2021-06-03	2021-04-20	2.66	3.49	—	3.0	0.004	0.74	0.0	0.05	13.13	0.01	2.266	3.37	0.00	3.0	97.0	0.0	-0.62	0.82	0.82	2.50	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	28143	3495	27	0	60	0	0	logfile
✔	7MJL	23877	2021-06-01	2021-04-20	2.95	3.62	—	3.3	0.005	0.84	0.0	0.05	12.15	0.01	2.351	2.66	0.00	3.9	96.1	0.0	-0.85	0.80	0.87	3.95	3.3	0.004	0.61	0.0	0.04	14.85	0.00	2.177	6.17	1.51	3.6	96.4	0.0	0.16	1.09	0.80	0.88	3.34	4788	621	4	0	1	0	0	logfile
✔	7MJG	23872	2021-06-03	2021-04-20	2.81	3.69	—	3.2	0.004	0.74	0.0	0.05	12.89	0.01	2.284	2.77	0.00	2.8	97.2	0.0	-0.64	0.86	0.82	2.69	3.2	0.006	0.62	0.0	0.05	14.47	0.00	2.096	9.28	1.02	2.9	97.1	0.0	0.45	2.32	0.87	0.86	2.36	25260	3120	24	0	60	0	0	logfile
✔	7MJJ	23875	2021-06-04	2021-04-20	3.32	4.04	—	3.5	0.004	0.73	0.0	0.05	12.82	0.01	2.278	3.20	0.00	3.2	96.8	0.0	-0.70	0.84	0.81	1.90	3.5	0.003	0.61	0.0	0.04	14.68	0.00	2.090	10.07	0.17	2.9	97.1	0.0	0.47	1.67	0.86	0.84	1.77	31680	3968	28	0	60	0	0	logfile
✔	7MJN	23879	2021-06-01	2021-04-20	3.29	4.21	—	3.7	0.004	0.83	0.0	0.05	13.35	0.01	2.295	3.30	0.00	2.4	97.6	0.0	-1.29	0.88	0.85	2.95	3.7	0.003	0.60	0.0	0.04	14.65	0.00	2.218	9.57	0.29	2.4	97.5	0.1	1.25	0.40	0.88	0.86	2.67	6526	797	4	0	5	0	0	logfile
✔	7MJM	23878	2021-06-04	2021-04-20	2.83	3.74	—	3.0	0.004	0.75	0.0	0.05	13.53	0.01	2.285	2.96	0.00	2.7	97.3	0.0	-0.95	0.83	0.79	2.12	3.1	0.007	0.79	0.0	0.04	15.36	0.00	2.122	12.26	1.06	3.4	96.6	0.0	0.21	1.67	0.84	0.80	2.14	35096	4312	28	0	68	0	0	logfile
✔	7ENJ	31211	2021-06-05	2021-04-17	4.4	4.62	—	4.0	0.011	1.18	16.0	0.07	15.29	0.01	2.211	7.72	1.23	5.7	93.7	0.6	-2.67	0.75	0.49	—	4.1	0.003	0.66	0.0	0.04	14.05	0.00	2.094	13.14	0.00	4.9	95.0	0.1	1.45	0.87	0.82	0.69	—	57971	7340	27	0	21	0	0	logfile
✔	7Mi6	23841	2021-06-03	2021-04-16	3.9	4.23	3.91	4.0	0.012	1.62	3.0	0.08	13.49	0.01	2.027	6.41	1.32	5.3	94.3	0.4	-2.30	0.84	0.82	1.35	3.9	0.005	0.86	0.0	0.04	16.33	0.00	1.958	18.52	0.41	4.9	95.0	0.0	0.14	1.23	0.85	0.83	1.39	19653	2419	1	0	4	0	0	logfile
✔	7Mi3	23838	2021-06-02	2021-04-16	3.5	3.72	3.45	3.6	0.012	1.73	0.0	0.08	12.77	0.01	1.978	5.12	1.94	6.8	92.8	0.3	-1.80	0.85	0.86	3.53	3.6	0.003	0.70	0.0	0.04	15.07	0.00	2.065	9.62	0.28	3.8	96.2	0.0	0.71	2.47	0.85	0.87	2.65	9682	1192	1	0	4	0	0	logfile
✔	7Mi8	23842	2021-06-02	2021-04-16	3.7	4.01	3.56	3.8	0.006	0.97	0.0	0.05	14.13	0.01	2.226	5.27	0.38	2.4	97.4	0.1	-3.11	0.79	0.84	2.27	3.8	0.003	0.72	0.0	0.04	16.93	0.00	2.237	9.47	0.38	2.7	97.3	0.0	1.13	0.89	0.80	0.84	1.42	7034	868	1	0	0	0	0	logfile
✔	7ENC	31207	2021-06-07	2021-04-16	4.13	4.14	—	3.6	0.012	1.43	110.0	0.10	15.86	0.01	1.454	16.71	9.09	3.9	95.2	0.9	1.55	0.57	0.22	—	3.5	0.004	0.68	0.0	0.04	13.90	0.00	1.985	15.67	0.01	4.6	95.1	0.2	0.76	2.21	0.59	0.27	—	171177	21321	88	138	18	0	0	logfile
✔	7ENA	31204	2021-06-07	2021-04-16	4.07	3.90	—	3.5	0.011	1.59	361.0	0.11	17.28	0.01	1.497	21.87	10.72	7.9	90.7	1.4	-2.34	0.57	0.29	—	3.3	0.005	0.77	0.0	0.04	14.31	0.00	1.941	16.32	0.01	8.2	91.6	0.3	-0.49	1.63	0.64	0.47	—	173965	21595	88	138	18	0	0	logfile
✔	7EN0	31197	2021-06-01	2021-04-15	2.97	3.38	3.13	3.4	0.006	0.91	0.0	0.05	15.75	0.00	2.299	9.06	4.80	4.2	95.1	0.6	-3.26	0.50	0.77	2.43	3.3	0.003	0.62	0.0	0.04	15.65	0.00	2.228	8.10	2.33	3.2	96.8	0.0	1.25	0.56	0.62	0.84	2.44	7239	939	6	0	6	0	0	logfile

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