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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 3J9D | 6239 | 2024-07-19 | 2015-01-09 | 3.3 | 2.70 | — | 3.4 | 0.027 | 2.04 | 0.0 | 0.08 | 20.57 | 0.01 | 2.034 | 23.66 | 24.92 | 8.2 | 89.6 | 2.2 | -3.64 | 0.81 | 0.89 | 2.90 | 3.3 | 0.022 | 0.82 | 0.0 | 0.04 | 17.81 | 0.00 | 2.186 | 15.94 | 5.11 | 6.7 | 92.7 | 0.5 | -1.39 | 2.36 | 0.75 | 0.84 | 2.66 | 6086 | 746 | 2 | 0 | 1 | 0 | 0 | logfile |
✔ | 6R23 | 4708 | 2024-07-18 | 2019-03-15 | 4.9 | 4.57 | — | 4.6 | 0.006 | 1.07 | 0.0 | 0.05 | 16.56 | 0.01 | 2.332 | 7.52 | 0.00 | 7.9 | 92.1 | 0.0 | -4.61 | 0.60 | 0.75 | — | 4.6 | 0.003 | 0.65 | 0.0 | 0.03 | 16.46 | 0.00 | 2.358 | 8.83 | 0.00 | 6.7 | 93.3 | 0.0 | 0.64 | 3.59 | 0.60 | 0.73 | — | 1518 | 182 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 6ZQi | 11364 | 2024-07-19 | 2020-07-09 | 3.8 | 4.13 | 3.63 | 4.1 | 0.002 | 0.56 | 0.0 | 0.04 | 12.44 | 0.00 | 2.336 | 6.03 | 1.12 | 3.1 | 96.9 | 0.0 | -2.14 | 0.67 | 0.78 | 0.85 | 4.1 | 0.005 | 0.83 | 0.0 | 0.05 | 15.84 | 0.00 | 2.186 | 12.87 | 5.03 | 6.2 | 93.8 | 0.0 | -0.79 | 0.65 | 0.69 | 0.81 | 1.24 | 5032 | 655 | 4 | 0 | 1 | 0 | 0 | logfile |
✔ | 5LiJ | 4054 | 2024-07-18 | 2016-07-14 | 4.2 | 3.63 | — | 4.2 | 0.009 | 2.92 | 4.0 | 0.17 | 15.82 | 0.01 | 2.249 | 25.64 | 0.00 | 10.7 | 89.3 | 0.0 | -6.36 | 0.85 | 0.76 | — | 3.8 | 0.005 | 1.18 | 0.0 | 0.04 | 10.31 | 0.00 | 2.148 | 15.12 | 0.00 | 32.0 | 68.0 | 0.0 | -5.66 | 1.48 | 0.86 | 0.78 | — | 761 | 152 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7VV6 | 32139 | 2024-07-18 | 2021-11-04 | 3.3 | 3.47 | — | 3.5 | 0.010 | 1.38 | 0.0 | 0.07 | 19.05 | 0.01 | 2.291 | 4.89 | 10.37 | 5.2 | 94.8 | 0.0 | -4.22 | 0.62 | 0.83 | 1.64 | 3.5 | 0.003 | 0.60 | 0.0 | 0.04 | 16.56 | 0.00 | 2.174 | 6.44 | 4.15 | 3.0 | 97.0 | 0.0 | 3.21 | 0.67 | 0.63 | 0.85 | 2.46 | 2227 | 271 | 2 | 0 | 2 | 0 | 0 | logfile |
✔ | 7JV2 | 22491 | 2024-07-18 | 2020-08-20 | 3.5 | 3.49 | 3.41 | 3.7 | 0.015 | 1.39 | 0.0 | 0.08 | 11.43 | 0.01 | 2.587 | 0.00 | 1.32 | 3.6 | 96.4 | 0.0 | 0.82 | 0.69 | 0.74 | 3.48 | 3.7 | 0.004 | 0.76 | 0.0 | 0.04 | 15.55 | 0.00 | 2.199 | 13.80 | 5.73 | 6.6 | 93.4 | 0.0 | -1.13 | 1.28 | 0.70 | 0.77 | 3.87 | 2151 | 282 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7NKi | 12440 | 2024-07-25 | 2021-02-18 | 4.67 | 4.96 | — | 4.6 | 0.004 | 0.67 | 0.0 | 0.04 | 14.26 | 0.01 | 1.908 | 8.85 | 0.00 | 4.0 | 96.0 | 0.0 | -0.64 | 0.67 | 0.41 | — | 4.6 | 0.004 | 0.69 | 0.0 | 0.04 | 14.72 | 0.01 | 1.866 | 21.82 | 0.00 | 6.4 | 93.6 | 0.0 | -1.05 | 2.35 | 0.80 | 0.65 | — | 28775 | 1794 | 6 | 23 | 0 | 0 | 13868 | logfile |
✔ | 8G59 | 29736 | 2024-07-19 | 2023-02-12 | 2.64 | 2.58 | — | 2.9 | 0.005 | 0.73 | 1.0 | 0.05 | 12.16 | 0.01 | 1.930 | 10.26 | 0.22 | 3.8 | 96.1 | 0.1 | -0.15 | 0.82 | 0.76 | 2.19 | 2.9 | 0.003 | 0.62 | 0.0 | 0.04 | 15.09 | 0.00 | 2.025 | 8.44 | 1.54 | 4.1 | 95.9 | 0.0 | 0.98 | 0.48 | 0.81 | 0.79 | 1.85 | 8583 | 1118 | 6 | 0 | 1 | 0 | 0 | logfile |
✔ | 7LY0 | 23581 | 2024-07-18 | 2021-03-05 | 2.6 | 2.57 | 2.63 | 2.7 | 0.012 | 1.19 | 0.0 | 0.08 | 9.44 | 0.01 | 2.515 | 0.55 | 0.36 | 1.2 | 98.8 | 0.0 | 1.70 | 0.61 | 0.70 | 5.23 | 2.7 | 0.003 | 0.62 | 0.0 | 0.04 | 14.63 | 0.00 | 2.156 | 8.84 | 2.50 | 1.5 | 98.5 | 0.0 | 0.79 | 1.61 | 0.69 | 0.76 | 4.35 | 2805 | 354 | 5 | 0 | 6 | 0 | 0 | logfile |
✔ | 5Lii | 4053 | 2024-07-18 | 2016-07-14 | 3.8 | 2.99 | — | 3.9 | 0.015 | 2.41 | 6.0 | 0.14 | 12.69 | 0.01 | 1.855 | 42.83 | 1.41 | 16.9 | 81.9 | 1.2 | -6.10 | 0.55 | 0.70 | 3.46 | 3.8 | 0.003 | 0.87 | 0.0 | 0.04 | 16.56 | 0.01 | 2.215 | 13.32 | 7.07 | 12.1 | 87.2 | 0.7 | -4.25 | 0.80 | 0.55 | 0.66 | 1.49 | 3098 | 433 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6oUC | 20202 | 2024-07-18 | 2019-05-04 | 2.8 | 3.00 | — | 3.0 | 0.008 | 1.15 | 1.0 | 0.08 | 9.03 | 0.01 | 2.131 | 6.96 | 0.00 | 3.5 | 96.5 | 0.0 | -2.32 | 0.62 | 0.88 | 5.44 | 3.0 | 0.004 | 0.59 | 0.0 | 0.05 | 14.46 | 0.01 | 2.178 | 3.61 | 2.88 | 3.5 | 96.5 | 0.0 | -0.44 | 1.17 | 0.61 | 0.89 | 3.93 | 3899 | 483 | 2 | 0 | 1 | 124 | 0 | logfile |
✔ | 7LXX | 23578 | 2024-07-18 | 2021-03-05 | 3.0 | 2.96 | 3.03 | 3.2 | 0.012 | 1.19 | 0.0 | 0.06 | 9.98 | 0.01 | 2.519 | 0.57 | 0.00 | 3.6 | 96.4 | 0.0 | 0.69 | 0.75 | 0.78 | 4.22 | 3.2 | 0.003 | 0.66 | 0.0 | 0.04 | 13.95 | 0.00 | 2.191 | 9.07 | 2.81 | 3.3 | 96.7 | 0.0 | -0.48 | 1.60 | 0.77 | 0.82 | 4.40 | 2740 | 352 | 5 | 0 | 4 | 0 | 0 | logfile |
✔ | 7LYS | 23600 | 2024-07-21 | 2021-03-08 | 3.05 | 2.55 | 3.08 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 20.02 | 0.00 | 1.976 | 5.82 | 0.17 | 0.0 | 100.0 | 0.0 | -1.46 | 0.83 | 0.83 | 2.05 | 3.1 | 0.003 | 0.54 | 0.0 | 0.04 | 20.39 | 0.00 | 2.003 | 6.34 | 1.05 | 3.8 | 96.2 | 0.0 | 1.22 | 0.34 | 0.83 | 0.84 | 2.13 | 13573 | 669 | 4 | 89 | 0 | 0 | 6374 | logfile |
✔ | 7JZU | 22574 | 2024-07-18 | 2020-09-02 | 3.1 | 3.26 | 3.10 | 3.3 | 0.015 | 1.34 | 0.0 | 0.08 | 9.38 | 0.01 | 2.509 | 0.78 | 0.00 | 3.3 | 96.7 | 0.0 | 0.23 | 0.69 | 0.76 | 4.15 | 3.3 | 0.002 | 0.55 | 0.0 | 0.04 | 13.79 | 0.00 | 2.256 | 5.19 | 0.49 | 1.6 | 98.4 | 0.0 | 0.86 | 1.61 | 0.71 | 0.80 | 4.04 | 1987 | 248 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 7CXR | 30495 | 2024-07-19 | 2020-09-02 | 3.4 | 3.32 | 3.43 | 3.7 | 0.007 | 0.87 | 1.0 | 0.06 | 16.56 | 0.00 | 2.199 | 12.99 | 3.39 | 6.6 | 93.1 | 0.3 | -2.27 | 0.52 | 0.54 | 1.33 | 3.6 | 0.003 | 0.70 | 0.0 | 0.04 | 18.31 | 0.00 | 2.256 | 11.05 | 3.39 | 3.6 | 96.4 | 0.0 | 2.26 | 1.52 | 0.58 | 0.61 | 1.62 | 5168 | 614 | 2 | 0 | 0 | 0 | 0 | logfile |
✔ | 7JZM | 22533 | 2024-07-18 | 2020-09-02 | 3.5 | 3.74 | 3.50 | 3.7 | 0.015 | 1.38 | 0.0 | 0.08 | 9.53 | 0.01 | 2.420 | 1.01 | 0.00 | 2.0 | 98.0 | 0.0 | 0.75 | 0.75 | 0.78 | 4.01 | 3.7 | 0.002 | 0.65 | 0.0 | 0.04 | 14.61 | 0.00 | 2.183 | 8.12 | 1.49 | 3.1 | 96.9 | 0.0 | 0.90 | 1.24 | 0.76 | 0.80 | 3.36 | 2033 | 258 | 3 | 0 | 3 | 0 | 0 | logfile |
✔ | 3J9E | 6240 | 2024-07-18 | 2015-01-10 | 3.3 | 2.66 | — | 3.3 | 0.032 | 3.28 | 0.0 | 0.09 | 21.31 | 0.02 | 1.223 | 20.81 | 24.26 | 9.8 | 87.3 | 2.9 | -3.41 | 0.77 | 0.88 | 3.26 | 3.3 | 0.004 | 0.77 | 0.0 | 0.04 | 17.77 | 0.00 | 2.236 | 10.82 | 4.58 | 7.8 | 91.7 | 0.6 | 0.72 | 1.59 | 0.73 | 0.86 | 3.06 | 4098 | 520 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7WLC | 32581 | 2024-07-18 | 2022-01-13 | 4.0 | 4.24 | — | 4.1 | 0.003 | 0.70 | 0.0 | 0.04 | 13.71 | 0.00 | 2.198 | 15.62 | 0.00 | 6.1 | 93.9 | 0.0 | -1.35 | 0.71 | 0.77 | — | 4.1 | 0.004 | 0.76 | 0.0 | 0.05 | 16.01 | 0.00 | 2.156 | 17.48 | 3.34 | 9.4 | 90.6 | 0.0 | -1.65 | 0.49 | 0.72 | 0.78 | — | 3307 | 430 | 3 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R7N | 24299 | 2024-07-18 | 2021-06-25 | 3.95 | 4.08 | 3.93 | 4.1 | 0.010 | 1.24 | 0.0 | 0.07 | 9.31 | 0.00 | 2.553 | 0.78 | 0.45 | 3.2 | 96.8 | 0.0 | 0.00 | 0.81 | 0.77 | 3.23 | 4.0 | 0.003 | 0.73 | 0.0 | 0.04 | 14.42 | 0.00 | 2.314 | 7.75 | 6.73 | 3.8 | 96.2 | 0.0 | -1.04 | 1.34 | 0.83 | 0.80 | 2.31 | 2790 | 391 | 4 | 0 | 3 | 0 | 0 | logfile |
✔ | 7ZZ4 | 15034 | 2024-07-18 | 2022-05-25 | 2.63 | 3.04 | 2.56 | 2.2 | 0.008 | 1.05 | 0.0 | 0.05 | 18.14 | 0.00 | 2.035 | 5.21 | 0.27 | 3.3 | 96.7 | 0.0 | -0.79 | 0.86 | 0.84 | 4.14 | 2.2 | 0.003 | 0.55 | 0.0 | 0.04 | 17.25 | 0.00 | 1.903 | 10.42 | 1.06 | 3.7 | 96.3 | 0.0 | 1.00 | 1.10 | 0.87 | 0.85 | 3.78 | 3682 | 463 | 2 | 0 | 3 | 11 | 0 | logfile |