Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7LH3	23335	2024-07-20	2021-01-21	4.3	4.87	—	4.6	0.001	0.40	0.0	0.04	7.88	0.00	2.258	4.71	1.06	1.8	98.2	0.0	2.29	0.61	0.73	—	4.6	0.003	0.61	0.0	0.04	10.57	0.00	2.271	9.94	0.00	2.4	97.6	0.0	1.82	1.10	0.63	0.82	—	10452	1360	2	0	0	0	0	logfile
✔	6XLH	22244	2024-07-21	2020-06-28	2.83	2.93	—	2.9	0.001	0.39	0.0	0.04	7.61	0.00	2.093	5.99	0.13	1.5	98.5	0.0	-3.84	0.73	0.80	3.26	2.9	0.003	0.61	0.0	0.04	16.29	0.00	1.937	9.04	2.07	3.0	97.0	0.0	-0.14	1.20	0.77	0.88	3.91	13608	1675	6	0	6	0	0	logfile
✔	8AA4	15293	2024-07-21	2022-06-29	3.1	3.54	2.92	3.2	0.001	0.41	0.0	0.04	7.46	0.00	2.240	3.52	0.00	2.7	97.2	0.1	0.39	0.73	0.88	4.17	3.2	0.003	0.53	0.0	0.04	10.05	0.00	2.112	4.01	0.20	3.5	96.4	0.1	0.00	0.93	0.73	0.89	3.87	13616	1742	2	0	0	0	0	logfile
✔	7WoG	32651	2024-07-18	2022-01-21	4.06	2.95	—	2.0	0.001	0.41	0.0	0.04	8.09	0.00	2.293	10.22	3.78	8.0	92.0	0.0	-3.98	0.51	0.51	—	2.2	0.003	0.72	0.0	0.04	10.77	0.00	2.076	19.52	0.00	12.4	87.6	0.0	-2.57	0.92	0.54	0.54	—	3362	433	3	0	0	0	0	logfile
✔	7UVT	26816	2024-07-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.99	0.01	1.910	21.84	0.00	0.0	0.0	0.0	—	0.48	0.77	0.77	—	12409	0	1	386	0	0	4149	logfile
✔	8H8B	34541	2024-07-19	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.002	0.63	0.0	0.04	15.44	0.00	2.252	7.10	2.25	9.3	90.7	0.0	-1.80	0.62	0.74	0.84	3.61	8344	1027	1	0	0	0	0	logfile
✔	6D00	7782	2024-07-27	2018-04-09	4.0	3.65	—	3.0	0.001	0.45	0.0	0.04	9.42	0.00	2.284	3.91	0.05	6.5	92.8	0.7	-4.95	0.62	0.43	—	3.3	0.003	0.83	0.0	0.04	15.27	0.00	2.107	16.02	1.94	3.3	96.7	0.0	-0.21	1.18	0.83	0.68	—	38328	4824	12	0	12	0	0	logfile
✔	7T4M	25680	2024-07-27	2021-12-10	2.48	2.77	2.55	2.7	0.001	0.38	0.0	0.04	9.69	0.00	2.253	4.85	0.97	1.6	98.4	0.0	1.34	0.72	0.86	4.48	2.7	0.003	0.61	1.0	0.04	12.70	0.00	1.631	6.06	1.11	1.2	98.8	0.0	1.43	0.89	0.73	0.88	4.22	39054	4854	12	0	0	0	0	logfile
✔	6MWQ	9277	2024-07-23	2018-10-30	3.0	3.33	2.89	3.1	0.001	0.36	0.0	0.04	4.66	0.00	2.321	4.19	0.13	11.0	87.5	1.5	-4.81	0.54	0.39	0.22	3.1	0.004	0.72	0.0	0.04	13.43	0.00	2.123	8.59	2.16	4.3	95.5	0.2	-1.26	1.34	0.78	0.87	1.84	22072	2873	8	0	0	0	0	logfile
✔	7XSK	33425	2024-07-20	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.95	0.01	1.746	31.76	0.00	0.0	0.0	0.0	—	1.93	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7XMR	33302	2024-07-19	2022-04-26	3.1	3.31	2.93	3.3	0.001	0.40	0.0	0.04	10.86	0.00	2.250	5.63	0.00	1.6	98.4	0.0	-3.39	0.52	0.64	1.08	3.3	0.003	0.65	0.0	0.04	14.38	0.00	2.112	11.80	2.73	3.6	96.4	0.0	0.22	0.64	0.59	0.74	1.47	6611	871	5	0	0	0	0	logfile
✔	7JSH	22454	2024-07-19	2020-08-14	4.4	7.07	—	17.0	0.001	0.20	0.0	0.02	8.81	0.00	2.581	0.00	0.00	13.1	83.7	3.2	-3.27	0.49	0.25	—	5.3	0.005	1.30	0.0	0.05	13.69	0.01	1.942	27.17	0.00	31.8	67.9	0.3	-5.48	6.11	0.73	0.61	—	7916	1904	8	15	0	0	0	logfile
✔	6ZGG	11205	2024-07-24	2020-06-18	3.8	4.33	4.00	4.0	0.001	0.41	0.0	0.04	5.80	0.00	2.231	3.83	1.00	12.4	87.1	0.5	-2.52	0.84	0.74	0.73	4.0	0.007	0.80	0.0	0.04	11.65	0.00	2.085	13.66	2.60	6.7	93.2	0.0	-1.07	1.43	0.87	0.84	1.14	25096	3207	3	0	0	0	0	logfile
✔	5N6W	3595	2024-07-27	2017-02-16	4.2	4.31	—	4.2	0.001	0.36	0.0	0.04	4.92	0.00	2.309	3.73	0.00	17.7	79.7	2.6	-5.61	0.44	0.27	—	4.2	0.004	0.77	0.0	0.04	11.33	0.01	1.844	23.01	0.00	16.5	82.9	0.6	-3.97	1.95	0.72	0.73	—	40752	2512	16	0	0	0	20032	logfile
✔	8D9K	27264	2024-07-19	2022-06-10	3.72	4.58	3.85	4.1	0.001	0.37	0.0	0.03	16.35	0.00	2.270	6.46	0.64	1.9	98.1	0.0	1.53	0.89	0.84	2.42	4.1	0.003	0.50	0.0	0.04	17.22	0.00	2.142	11.42	2.14	2.1	97.9	0.0	0.75	0.56	0.90	0.86	1.97	5708	546	3	65	0	0	0	logfile
✔	8HiA	34813	2024-07-19	2022-11-19	4.9	4.49	2.13	9.6	0.001	0.36	0.0	0.05	15.83	0.00	2.251	1.11	2.86	12.1	87.6	0.2	-4.39	0.47	0.07	—	9.4	0.009	0.98	0.0	0.05	15.73	0.01	2.082	32.36	4.76	19.0	81.0	0.0	-5.53	12.59	0.68	0.24	—	7200	460	20	0	0	0	3660	logfile
✔	5oAF	3773	2024-07-22	2017-06-21	4.06	4.15	—	4.1	0.001	0.47	0.0	0.04	9.13	0.00	2.165	12.39	0.28	2.4	97.6	0.0	-2.75	0.69	0.67	—	4.1	0.003	0.72	0.0	0.04	12.81	0.00	2.097	14.18	0.00	4.3	95.7	0.0	-0.20	3.55	0.72	0.72	—	19748	2538	12	0	6	0	0	logfile
✔	7FiJ	31599	2024-07-18	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.006	0.86	0.0	0.05	12.15	0.00	2.163	13.33	11.25	16.5	83.5	0.0	-1.70	0.74	0.62	0.56	2.72	3061	561	1	0	0	0	0	logfile
✔	7XL4	33272	2024-07-24	2022-04-21	3.86	3.92	—	3.8	0.001	0.36	0.0	0.04	9.42	0.00	2.274	4.13	0.00	1.4	98.6	0.0	-4.82	0.78	0.75	1.26	3.8	0.004	0.79	1.0	0.04	14.16	0.00	1.925	9.24	3.60	5.5	94.5	0.0	-1.25	1.32	0.81	0.80	1.30	24560	3479	8	0	3	0	0	logfile
✔	6XLG	22243	2024-07-20	2020-06-28	2.71	2.81	—	2.8	0.001	0.36	0.0	0.04	10.47	0.00	2.105	5.84	0.00	1.3	98.7	0.0	-3.01	0.73	0.81	4.05	2.8	0.003	0.57	0.0	0.04	16.85	0.00	1.965	9.47	2.30	2.3	97.7	0.0	0.08	3.19	0.77	0.89	4.27	12258	1504	6	0	6	0	0	logfile

• Page 1 of 579
• next →