Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6oKS	20103	2024-07-21	2019-04-15	4.2	4.44	—	4.3	0.008	1.15	0.0	0.05	17.36	0.01	2.299	5.88	9.80	18.3	81.7	0.0	-5.50	0.78	0.81	—	4.3	0.003	0.81	0.0	0.04	14.55	0.01	2.130	12.79	0.00	13.9	86.1	0.0	-4.90	2.21	0.79	0.82	—	13244	1610	14	0	0	0	0	logfile
✔	8EL7	28223	2024-07-18	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.003	0.53	0.0	0.04	14.78	0.00	2.322	1.77	1.52	2.2	97.8	0.0	1.18	0.23	0.59	0.82	2.26	4562	604	3	0	0	5	0	logfile
✔	7K5X	22683	2024-07-22	2020-09-17	2.93	3.28	—	3.2	0.004	0.60	0.0	0.04	26.26	0.00	2.211	5.79	0.09	2.2	97.8	0.0	1.31	0.76	0.82	3.15	3.2	0.004	0.60	0.0	0.03	27.25	0.00	2.169	6.39	2.73	2.5	97.5	0.0	1.76	1.40	0.79	0.86	2.34	18291	1296	13	394	0	0	0	logfile
✔	6K71	9840	2024-07-26	2019-06-05	4.3	4.38	—	4.3	0.008	1.40	0.0	0.07	12.85	0.01	1.563	10.61	1.32	15.3	84.6	0.0	-5.50	0.66	0.64	—	4.3	0.003	0.80	0.0	0.05	13.04	0.00	2.139	14.79	0.06	10.2	89.8	0.0	-2.59	0.72	0.65	0.62	—	32589	4244	13	0	0	0	0	logfile
✔	7WY5	32884	2024-07-19	2022-02-15	2.83	2.25	—	2.0	0.005	0.75	0.0	0.05	12.83	0.00	1.986	1.32	0.00	5.4	94.6	0.0	-0.28	0.77	0.76	3.50	2.0	0.003	0.60	0.0	0.04	15.37	0.00	2.156	5.52	2.19	4.1	95.9	0.0	0.72	0.38	0.79	0.79	2.56	8009	1013	5	0	0	0	0	logfile
✔	7Y64	33633	2024-07-20	2022-06-18	2.9	2.25	2.85	2.1	0.002	0.58	0.0	0.04	12.47	0.00	2.139	5.05	0.19	2.5	97.5	0.0	0.58	0.76	0.77	3.26	2.1	0.003	0.58	0.0	0.04	15.51	0.00	2.219	4.58	2.89	3.3	96.7	0.0	0.85	0.37	0.79	0.81	3.11	9520	1218	6	0	0	0	0	logfile
✔	6PQQ	20451	2024-07-23	2019-07-09	2.81	3.26	2.82	3.2	0.011	1.26	0.0	0.07	21.09	0.01	2.316	4.85	0.20	3.4	96.6	0.0	-3.37	0.69	0.79	2.50	3.2	0.003	0.59	0.0	0.04	18.55	0.00	2.223	6.14	2.08	2.1	97.9	0.0	2.08	1.27	0.73	0.83	1.96	20016	2416	8	0	28	0	0	logfile
✔	7SP9	25369	2024-07-19	2021-11-02	2.9	3.20	—	3.1	0.004	0.57	0.0	0.05	12.07	0.00	2.245	5.66	0.00	1.2	98.8	0.0	1.62	0.71	0.78	2.80	3.1	0.003	0.61	0.0	0.04	15.00	0.00	2.275	10.05	2.07	2.8	97.1	0.1	1.13	0.64	0.73	0.85	3.48	5966	737	4	0	2	0	0	logfile
✔	8EL8	28224	2024-07-18	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.002	0.45	0.0	0.04	15.29	0.00	2.351	1.93	1.58	2.3	97.7	0.0	1.68	0.27	0.66	0.84	1.62	4467	597	2	0	0	0	0	logfile
✔	7KXY	23067	2024-07-20	2020-12-05	4.4	4.55	4.44	4.5	0.004	0.82	0.0	0.05	15.13	0.01	2.197	19.28	7.18	26.0	69.8	4.2	-5.90	0.63	0.60	—	4.5	0.004	0.83	0.0	0.05	14.57	0.01	2.058	24.93	0.00	17.3	82.7	0.1	-4.74	0.61	0.63	0.61	—	9510	1181	2	0	0	0	0	logfile
✔	7WY0	32883	2024-07-19	2022-02-15	2.83	2.21	—	2.0	0.007	0.87	0.0	0.06	11.98	0.00	1.690	7.73	0.00	6.2	93.8	0.0	-1.00	0.74	0.73	3.63	2.0	0.004	0.67	0.0	0.04	15.23	0.00	2.116	12.31	2.80	5.3	94.7	0.0	0.06	0.46	0.75	0.75	2.77	8723	1112	5	0	0	0	0	logfile
✔	8DPG	27634	2024-07-19	2022-07-15	3.6	2.36	3.57	2.2	0.002	0.49	0.0	0.04	9.69	0.00	2.151	4.40	0.61	0.9	99.1	0.0	1.82	0.73	0.69	1.78	2.1	0.003	0.59	0.0	0.04	13.33	0.00	2.078	5.91	2.32	2.5	97.5	0.0	1.70	1.09	0.76	0.73	1.82	8162	1093	6	0	2	0	0	logfile
✘	8F7X	28912	2024-07-19	2022-11-20	3.28	3.38	3.18	3.4	0.004	0.88	0.0	0.05	8.64	0.01	2.274	2.87	0.10	2.1	97.9	0.0	0.54	0.59	0.78	2.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8902	1145	6	0	0	0	0	logfile
✔	7S8L	24896	2024-07-19	2021-09-18	2.45	2.08	2.46	1.7	0.003	0.56	0.0	0.04	12.22	0.00	2.238	2.45	0.00	3.5	96.5	0.0	1.27	0.81	0.80	4.28	2.0	0.003	0.61	0.0	0.04	15.56	0.00	2.243	3.26	2.19	3.5	96.5	0.0	1.26	0.34	0.84	0.84	3.89	8177	1096	6	0	0	0	0	logfile
✔	6oKT	20104	2024-07-24	2019-04-15	4.2	4.31	—	4.2	0.007	0.96	0.0	0.06	15.35	0.01	2.188	7.94	1.60	11.9	88.1	0.0	-4.31	0.73	0.81	—	4.2	0.003	0.64	0.0	0.04	13.82	0.00	2.087	12.61	0.20	9.1	90.9	0.0	-2.47	0.55	0.73	0.81	—	27048	3451	7	0	0	0	0	logfile
✔	6o0Z	0585	2024-07-20	2019-02-17	3.3	3.94	—	3.6	0.006	0.72	0.0	0.04	18.94	0.00	2.302	2.58	0.27	6.3	93.7	0.0	-4.11	0.86	0.88	3.46	3.6	0.002	0.51	0.0	0.03	19.11	0.00	2.160	4.82	2.05	5.4	94.6	0.0	0.20	0.30	0.85	0.88	3.18	11912	1288	4	135	0	0	0	logfile
✔	7SEP	25074	2024-07-19	2021-10-01	3.8	2.53	3.76	1.6	0.006	0.66	0.0	0.05	12.76	0.01	2.155	10.23	8.22	5.0	95.0	0.0	-0.19	0.72	0.72	2.36	1.9	0.004	0.68	0.0	0.05	16.57	0.01	2.155	14.46	5.60	4.4	95.6	0.0	0.05	0.84	0.72	0.72	2.25	7641	930	2	0	0	0	0	logfile
✔	7WXU	32881	2024-07-19	2022-02-15	2.85	2.28	—	2.1	0.009	0.84	0.0	0.05	13.41	0.01	2.209	1.23	0.00	5.8	94.2	0.0	-1.00	0.78	0.78	3.95	2.1	0.003	0.60	0.0	0.04	15.63	0.00	2.113	4.00	2.59	3.8	96.2	0.0	0.65	0.36	0.80	0.81	2.61	8116	1034	5	0	0	0	0	logfile
✔	6KLN	0712	2024-07-20	2019-07-30	3.4	4.21	—	3.7	0.009	0.86	0.0	0.05	16.34	0.00	1.903	12.23	11.46	8.4	91.6	0.0	-4.65	0.70	0.88	2.12	3.7	0.005	0.67	0.0	0.04	15.12	0.00	1.881	9.31	1.19	4.8	95.2	0.0	-0.03	0.56	0.70	0.90	1.89	11748	1488	8	0	8	0	0	logfile
✔	7SZi	25567	2024-07-19	2021-11-27	2.7	3.34	—	3.1	0.002	0.44	0.0	0.04	13.00	0.00	2.265	3.93	0.12	3.5	96.4	0.1	0.36	0.70	0.86	5.04	3.1	0.005	0.55	0.0	0.04	14.28	0.00	2.182	3.67	0.84	3.7	96.2	0.1	0.19	0.26	0.72	0.88	5.07	8089	1038	4	0	0	0	0	logfile

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