Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	6MiX	9132	2024-07-28	2018-09-20	3.6	4.57	—	14.0	0.007	1.19	0.0	0.07	16.40	0.01	2.212	9.79	2.30	14.6	85.0	0.4	-5.69	-0.03	0.00	0.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43120	5348	4	0	0	0	0	logfile
✘	5X1G	6701	2024-07-18	2017-01-25	4.5	7.89	—	37.0	0.008	1.42	0.0	0.05	10.05	0.01	2.345	27.78	0.00	6.9	93.1	0.0	-2.75	0.00	0.01	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	155	31	1	0	0	0	0	logfile
✔	5M6S	3451	2024-07-18	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.60	0.0	0.03	17.87	0.00	1.962	10.68	0.00	7.3	92.7	0.0	2.28	2.21	0.03	0.01	—	1593	98	1	0	0	0	793	logfile
✔	5MSH	3565	2024-07-18	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.78	0.0	0.05	13.12	0.01	2.193	15.96	0.00	7.5	92.5	0.0	-1.32	1.97	0.04	0.15	—	4287	551	2	0	0	0	0	logfile
✔	7UR5	26705	2024-07-19	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.005	0.89	0.0	0.05	27.26	0.01	2.007	16.72	0.00	0.0	0.0	0.0	—	1.85	0.08	0.67	—	5709	0	3	270	0	0	0	logfile
✔	7URi	26713	2024-07-18	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	28.72	0.01	2.070	25.42	0.00	0.0	0.0	0.0	—	2.08	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	8J5Y	33733	2024-07-20	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.003	0.74	0.0	0.04	15.95	0.00	2.112	15.74	2.42	7.6	92.3	0.1	-1.26	1.56	0.12	0.06	0.26	10905	1389	4	0	0	0	0	logfile
✔	7V66	31736	2024-07-26	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	4.1	0.006	1.44	8.0	0.04	15.60	0.01	2.233	16.30	1.61	4.1	95.9	0.0	3.25	1.24	0.14	0.12	-0.77	33216	4128	24	0	0	0	0	logfile
✔	5NV3	3699	2024-07-27	2017-05-03	3.39	3.43	—	3.4	0.007	1.22	2.0	0.07	14.59	0.00	2.164	2.84	0.94	5.6	94.2	0.2	-2.82	0.09	0.16	3.78	3.4	0.003	0.62	0.0	0.04	16.36	0.00	1.947	8.17	2.90	3.3	96.7	0.0	0.01	1.62	0.59	0.75	3.99	37816	4768	24	0	16	0	0	logfile
✔	7LJ3	23388	2024-07-24	2021-01-28	2.9	2.92	—	3.4	0.005	0.72	0.0	0.04	20.50	0.00	1.041	27.61	3.30	3.6	96.0	0.4	0.29	0.10	0.23	-0.14	2.9	0.004	0.64	0.0	0.03	21.90	0.00	2.018	8.16	4.04	4.9	94.9	0.2	2.36	1.40	0.22	0.79	1.85	25714	2564	12	225	0	0	0	logfile
✔	7VZ3	32219	2024-07-22	2021-11-15	2.46	2.36	2.43	19.0	0.009	1.08	2.0	0.07	12.80	0.01	2.203	4.37	0.26	5.4	94.5	0.1	-1.44	0.12	0.02	0.32	2.2	0.005	0.92	1.0	0.05	14.33	0.01	1.998	15.23	1.79	6.2	93.7	0.1	-1.36	1.71	0.22	0.15	0.55	17415	2256	3	0	0	0	0	logfile
✘	8X63	38078	2024-07-18	2023-11-20	3.2	4.09	3.72	4.5	0.006	0.77	1.0	0.05	15.29	0.01	2.411	9.43	0.81	8.0	92.0	0.0	-0.11	0.13	0.13	0.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	2252	270	2	0	1	0	0	logfile
✔	8G9R	29874	2024-07-18	2023-02-21	3.28	3.68	2.90	44.0	0.003	0.59	0.0	0.05	16.84	0.01	2.542	2.24	0.00	5.7	94.3	0.0	-3.38	0.13	0.07	1.03	4.2	0.004	0.77	0.0	0.05	16.59	0.01	2.246	16.24	3.08	10.6	89.4	0.0	-3.56	2.52	0.26	0.35	1.90	3570	455	5	0	0	0	0	logfile
✔	5M5H	4155	2024-07-18	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.003	0.85	0.0	0.05	12.37	0.01	2.369	17.88	0.00	7.9	92.1	0.0	-0.80	1.84	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7URM	26714	2024-07-18	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.88	0.01	2.001	29.60	0.00	0.0	0.0	0.0	—	1.67	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	6RED	4850	2024-07-26	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.61	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.003	0.69	0.0	0.04	15.79	0.00	1.949	15.30	2.13	4.1	95.8	0.1	-0.02	0.95	0.23	0.14	0.26	33899	4503	25	0	10	0	0	logfile
✔	6FLQ	4275	2024-07-25	2018-01-26	3.6	3.93	3.76	40.0	0.016	1.33	0.0	0.07	15.27	0.01	1.897	5.97	1.40	10.8	89.1	0.1	-4.32	0.16	0.02	0.21	3.7	0.006	1.01	1.0	0.05	17.68	0.01	1.917	21.67	4.01	11.5	88.4	0.1	-1.93	2.09	0.27	0.21	-0.04	30201	3868	10	91	3	0	0	logfile
✔	8TEK	41189	2024-07-21	2023-07-06	3.6	2.85	3.88	3.4	0.015	0.65	0.0	0.04	15.86	0.00	2.065	14.54	0.00	3.9	96.0	0.1	-1.18	0.16	0.51	0.46	2.7	0.015	0.79	0.0	0.04	19.31	0.00	2.078	20.47	3.65	4.4	95.5	0.1	-0.11	2.30	0.19	0.67	0.47	15250	1817	10	0	0	0	0	logfile
✔	8SZ7	40902	2024-07-18	2023-05-27	2.84	3.08	2.87	3.6	0.003	0.46	0.0	0.04	9.67	0.00	2.393	1.99	0.00	0.9	99.1	0.0	1.11	0.17	0.20	2.22	3.2	0.003	0.63	0.0	0.04	12.95	0.00	2.230	6.71	0.90	2.6	97.4	0.0	2.33	1.12	0.44	0.65	1.21	4026	240	1	0	0	0	2021	logfile
✔	6Qi8	4552	2024-07-21	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.79	0.0	0.04	17.52	0.00	2.159	12.66	1.90	6.1	93.9	0.0	-1.65	1.43	0.30	0.19	0.23	14789	1907	12	0	6	0	0	logfile

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