Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HFC	34717	2024-07-18	2022-11-10	3.5	3.66	3.42	3.7	0.007	0.67	0.0	0.05	18.01	0.00	2.164	9.17	3.88	6.5	93.3	0.2	-2.90	0.68	0.82	2.21	3.7	0.002	0.60	0.0	0.04	17.34	0.00	2.102	7.28	2.74	4.3	95.7	0.0	0.63	1.19	0.64	0.79	1.91	4007	498	3	0	3	0	0	logfile
✔	8DKW	27492	2024-07-18	2022-07-06	3.09	3.64	3.05	3.6	0.006	0.71	1.0	0.06	13.84	0.00	2.097	8.61	0.41	6.2	93.8	0.0	-2.92	0.60	0.83	3.25	3.6	0.004	0.61	0.0	0.04	15.31	0.00	2.166	7.01	2.70	6.2	93.8	0.0	-0.38	0.29	0.55	0.84	2.64	4370	553	3	0	0	0	0	logfile
✔	7WN0	32618	2024-07-18	2022-01-17	3.64	3.82	—	3.7	0.003	0.57	0.0	0.04	16.82	0.01	2.273	9.34	0.47	3.3	96.7	0.0	1.10	0.58	0.82	1.51	3.7	0.004	0.62	0.0	0.04	16.93	0.00	2.240	11.51	4.20	3.9	96.1	0.0	1.32	1.90	0.68	0.86	1.36	3879	494	2	0	0	0	0	logfile
✔	8HBV	34644	2024-07-18	2022-10-31	2.51	2.70	2.51	2.7	0.009	0.96	0.0	0.05	15.84	0.01	2.209	8.10	0.00	2.0	98.0	0.0	1.54	0.61	0.88	4.41	2.7	0.003	0.54	0.0	0.04	16.81	0.00	2.201	7.49	1.78	2.2	97.8	0.0	2.81	0.93	0.59	0.88	3.69	3279	414	3	0	3	0	0	logfile
✔	7LCJ	23275	2024-07-18	2021-01-11	2.82	3.02	2.78	3.1	0.011	1.19	3.0	0.08	13.41	0.01	2.216	8.89	1.16	3.9	96.1	0.0	0.54	0.46	0.80	2.75	3.1	0.002	0.52	0.0	0.04	15.33	0.00	2.303	4.05	2.03	2.8	97.2	0.0	2.72	1.69	0.48	0.81	2.66	3264	390	2	0	1	17	0	logfile
✔	6UKJ	20806	2024-07-18	2019-10-05	3.3	3.53	3.32	3.4	0.007	0.91	0.0	0.05	13.74	0.01	2.114	6.29	0.79	4.5	95.1	0.3	-3.21	0.62	0.81	3.08	3.4	0.003	0.62	0.0	0.04	16.22	0.00	2.213	9.55	5.95	3.3	96.7	0.0	0.41	1.53	0.64	0.83	2.50	4625	582	4	0	1	0	0	logfile
✔	7WN1	32619	2024-07-18	2022-01-17	3.11	3.41	—	3.3	0.007	0.65	0.0	0.04	13.83	0.00	2.246	7.77	0.00	3.7	96.3	0.0	1.00	0.64	0.87	3.64	3.3	0.003	0.56	0.0	0.04	16.09	0.00	2.143	9.43	3.02	4.1	95.9	0.0	1.94	0.32	0.66	0.89	3.18	3901	493	3	0	1	0	0	logfile
✘	7UV0	26808	2024-07-18	2022-04-29	3.1	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3784	501	2	0	4	0	0	logfile
✔	8CK0	16688	2024-07-18	2023-02-14	3.8	3.83	3.70	3.8	0.005	0.80	0.0	0.05	16.63	0.01	2.259	15.81	0.00	5.3	94.7	0.0	0.79	0.17	0.78	1.47	3.8	0.003	0.65	0.0	0.04	17.84	0.00	2.287	11.79	3.38	3.8	96.2	0.0	2.14	0.70	0.18	0.78	1.72	3762	478	1	0	0	0	0	logfile
✔	7UUY	26806	2024-07-18	2022-04-29	3.3	3.47	3.28	3.5	0.004	0.58	0.0	0.04	13.50	0.00	2.067	5.68	0.25	5.5	94.5	0.0	0.72	0.61	0.84	2.03	3.5	0.003	0.63	0.0	0.04	15.02	0.00	2.204	7.49	2.52	4.6	95.4	0.0	2.01	1.13	0.59	0.83	1.74	3809	503	2	0	1	0	0	logfile
✔	7YNi	33962	2024-07-18	2022-07-31	3.26	3.56	3.00	3.6	0.004	0.66	0.0	0.04	10.92	0.01	2.206	19.26	0.00	5.0	94.5	0.5	0.78	0.44	0.69	1.96	3.6	0.003	0.67	0.0	0.04	14.23	0.01	2.236	14.10	2.09	5.0	94.7	0.3	1.51	0.94	0.48	0.71	1.52	4387	594	3	0	1	0	0	logfile
✔	7V0Y	26953	2024-07-18	2022-05-11	3.0	2.81	2.91	2.9	0.003	0.63	0.0	0.04	19.40	0.00	2.203	5.27	1.46	1.5	98.5	0.0	0.80	0.62	0.85	3.45	2.9	0.004	0.60	0.0	0.04	19.52	0.00	2.064	9.75	2.49	1.6	98.4	0.0	1.03	0.35	0.61	0.86	3.13	4454	558	3	0	0	1	0	logfile
✔	8E3S	27871	2024-07-18	2022-08-17	3.1	4.11	3.27	3.9	0.003	0.59	0.0	0.04	13.23	0.00	2.185	10.30	0.00	3.6	96.4	0.0	0.13	0.79	0.75	2.95	3.9	0.004	0.63	0.0	0.04	15.13	0.00	2.175	11.29	1.80	4.8	95.2	0.0	-0.04	1.01	0.79	0.75	2.36	4072	503	2	0	1	0	0	logfile
✔	7MKM	23899	2024-07-18	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.04	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	2.1	0.003	0.76	0.0	0.04	14.77	0.00	2.241	10.90	0.86	5.0	95.0	0.0	-2.17	0.57	0.53	0.61	1.70	3192	406	4	0	1	0	0	logfile
✔	7F9W	31499	2024-07-18	2021-07-05	3.2	3.72	—	3.6	0.005	0.68	0.0	0.04	12.99	0.00	2.114	9.28	0.63	4.5	95.5	0.0	0.24	0.76	0.80	3.40	3.6	0.005	0.70	0.0	0.04	15.54	0.00	2.105	9.88	2.96	5.0	95.0	0.0	0.28	0.48	0.77	0.82	2.85	4217	547	3	0	0	0	0	logfile
✔	7UAQ	26430	2024-07-18	2022-03-13	3.1	3.91	2.90	3.7	0.006	1.19	2.0	0.07	13.13	0.01	2.101	25.20	0.22	11.5	88.5	0.0	-2.56	0.57	0.74	2.32	3.7	0.003	0.79	0.0	0.05	14.88	0.00	2.144	16.41	3.24	10.3	89.7	0.0	-2.12	1.26	0.57	0.78	2.14	4362	533	8	0	10	0	0	logfile
✘	6X2Z	22014	2024-07-18	2020-05-21	3.03	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3205	420	2	0	3	0	0	logfile
✔	7SWW	25487	2024-07-18	2021-11-21	3.13	2.34	—	2.0	0.004	0.76	0.0	0.06	13.91	0.01	2.214	9.55	0.00	2.4	97.6	0.0	-0.48	0.58	0.70	2.57	2.0	0.003	0.63	0.0	0.04	14.85	0.00	2.085	8.20	3.79	4.6	95.4	0.0	-0.71	0.49	0.58	0.70	2.22	4172	511	6	0	8	0	0	logfile
✔	8AG3	15414	2024-07-18	2022-07-19	3.47	2.17	3.26	2.0	0.002	0.60	0.0	0.04	17.16	0.01	2.143	8.90	0.00	6.6	93.4	0.0	-1.45	0.61	0.73	3.03	1.8	0.003	0.63	0.0	0.05	17.40	0.01	2.085	9.47	4.22	8.2	91.8	0.0	-1.12	0.32	0.62	0.77	2.98	2632	322	2	0	0	0	0	logfile
✔	8DKX	27493	2024-07-18	2022-07-06	3.0	3.53	3.00	3.4	0.005	0.75	1.0	0.05	13.28	0.00	2.099	8.39	0.62	5.5	94.5	0.0	-3.42	0.62	0.84	4.43	3.4	0.003	0.59	0.0	0.04	15.63	0.00	2.171	6.78	3.11	4.9	95.1	0.0	-0.07	0.91	0.57	0.84	3.58	4370	553	3	0	0	0	0	logfile

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