Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TPJ	26057	2024-07-18	2022-01-25	3.46	3.68	—	3.7	0.004	0.70	0.0	0.04	14.42	0.01	2.159	9.09	0.00	5.0	95.0	0.0	-0.01	0.57	0.69	1.76	3.7	0.003	0.62	0.0	0.04	16.48	0.00	2.253	8.15	1.60	5.0	95.0	0.0	0.73	1.42	0.60	0.72	1.81	4758	626	3	0	0	0	0	logfile
✔	7SK2	25170	2024-07-18	2021-10-19	3.82	4.03	—	3.9	0.005	1.06	0.0	0.06	13.67	0.01	2.235	8.03	0.00	4.7	95.3	0.0	-2.59	0.49	0.69	1.11	3.9	0.003	0.79	0.0	0.04	15.93	0.00	2.154	18.50	3.29	6.0	94.0	0.0	-0.38	0.55	0.50	0.69	0.62	4177	532	2	0	1	0	0	logfile
✔	8EL8	28224	2024-07-18	2022-09-23	3.2	3.53	3.33	3.5	0.007	0.70	0.0	0.04	13.20	0.00	2.403	2.38	0.00	1.7	98.3	0.0	0.75	0.66	0.85	2.31	3.5	0.002	0.45	0.0	0.04	15.29	0.00	2.351	1.93	1.58	2.3	97.7	0.0	1.68	0.27	0.66	0.84	1.62	4467	597	2	0	0	0	0	logfile
✔	6MLU	9146	2024-07-18	2018-09-28	4.0	4.03	—	4.0	0.005	1.05	0.0	0.06	9.86	0.01	2.406	5.97	0.69	10.6	89.4	0.0	-4.38	0.40	0.78	—	4.0	0.005	1.00	0.0	0.06	17.73	0.01	2.186	30.83	8.33	13.6	86.4	0.0	-2.59	2.52	0.45	0.78	—	2516	306	2	0	0	0	0	logfile
✔	8CXo	27062	2024-07-18	2022-05-22	3.7	4.10	3.65	4.1	0.003	0.58	0.0	0.04	10.10	0.00	2.329	2.39	0.00	2.7	96.9	0.4	1.90	0.60	0.77	1.79	4.1	0.003	0.73	0.0	0.04	15.60	0.00	2.260	12.07	3.66	4.6	95.4	0.0	1.88	1.90	0.61	0.79	1.02	4392	551	2	0	1	0	0	logfile
✔	6XDC	22136	2024-07-18	2020-06-10	2.9	3.80	—	3.7	0.006	0.79	0.0	0.06	13.65	0.01	2.279	4.95	1.15	4.0	96.0	0.0	-2.72	0.47	0.71	3.58	3.7	0.003	0.57	0.0	0.04	15.03	0.00	2.198	9.09	2.87	4.2	95.8	0.0	1.02	1.67	0.44	0.69	3.31	3150	386	2	0	0	0	0	logfile
✔	7SQS	25392	2024-07-18	2021-11-06	3.1	3.86	2.91	3.6	0.002	0.47	0.0	0.04	13.61	0.00	2.317	3.59	0.22	2.9	97.1	0.0	1.01	0.76	0.84	2.45	3.6	0.003	0.53	0.0	0.04	14.93	0.00	2.265	4.05	1.51	3.8	96.2	0.0	1.03	0.33	0.77	0.86	2.80	4376	560	5	0	0	0	0	logfile
✔	8EL7	28223	2024-07-18	2022-09-23	2.8	3.11	2.95	3.1	0.006	0.61	0.0	0.04	13.13	0.00	2.295	2.43	0.00	1.7	98.3	0.0	0.97	0.57	0.80	2.31	3.1	0.003	0.53	0.0	0.04	14.78	0.00	2.322	1.77	1.52	2.2	97.8	0.0	1.18	0.23	0.59	0.82	2.26	4562	604	3	0	0	5	0	logfile
✔	7WQW	32714	2024-07-18	2022-01-26	3.2	3.57	—	3.4	0.003	0.49	0.0	0.04	10.25	0.00	2.272	8.99	4.47	6.7	93.3	0.0	-4.30	0.77	0.75	2.23	3.5	0.003	0.65	0.0	0.04	14.65	0.00	2.185	13.61	2.82	9.3	90.7	0.0	-2.58	1.40	0.79	0.79	2.55	3983	496	4	0	9	0	0	logfile
✔	7F3U	31441	2024-07-18	2021-06-17	4.0	4.20	—	4.2	0.006	0.89	0.0	0.05	11.59	0.00	2.275	21.93	0.00	8.6	91.4	0.0	2.22	0.60	0.78	—	4.2	0.004	0.85	0.0	0.04	15.72	0.00	2.137	16.88	5.90	6.1	93.9	0.0	3.58	1.28	0.59	0.77	—	4274	656	2	0	0	0	0	logfile
✔	6VPS	21316	2024-07-18	2020-02-04	2.6	2.62	2.52	2.7	0.011	1.14	10.0	0.13	20.44	0.01	2.501	19.04	0.00	6.9	93.1	0.0	-3.61	0.49	0.90	6.11	2.7	0.004	0.52	0.0	0.03	20.02	0.00	2.389	3.30	1.96	6.9	93.1	0.0	-3.77	1.19	0.46	0.87	6.47	2736	279	9	0	0	0	0	logfile
✔	7Y5H	33620	2024-07-18	2022-06-17	3.72	4.13	3.68	4.1	0.002	0.39	0.0	0.04	12.51	0.00	2.030	3.76	0.00	0.5	99.5	0.0	0.06	0.63	0.77	1.35	4.1	0.003	0.62	0.0	0.04	15.09	0.00	2.000	7.00	2.46	1.7	98.3	0.0	1.58	1.08	0.66	0.81	1.36	4704	600	4	0	4	0	0	logfile
✔	7RYQ	24745	2024-07-18	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.9	0.003	0.74	0.0	0.04	14.12	0.01	2.126	14.78	0.00	6.8	93.2	0.0	-0.17	1.21	0.85	0.76	—	4332	527	1	0	0	0	0	logfile
✔	8J7N	36043	2024-07-18	2023-04-27	3.0	3.05	2.62	3.0	0.008	0.82	0.0	0.06	12.26	0.00	2.276	16.74	0.00	13.5	86.5	0.0	-5.22	0.42	0.90	5.56	3.0	0.004	0.69	0.0	0.05	16.40	0.00	2.242	7.22	2.91	10.5	89.5	0.0	-4.08	1.28	0.41	0.91	5.31	3258	405	3	0	0	0	0	logfile
✔	8C8P	16490	2024-07-18	2023-01-20	4.1	5.09	4.13	5.5	0.002	0.67	0.0	0.05	13.50	0.00	2.267	6.06	0.00	2.6	97.4	0.0	-2.08	0.66	0.67	—	5.0	0.004	0.74	0.0	0.05	13.71	0.00	2.115	22.57	0.00	8.1	91.9	0.0	-1.12	1.09	0.68	0.73	—	2449	314	2	0	0	0	0	logfile
✔	7T2E	25611	2024-07-18	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.48	0.0	0.04	16.27	0.00	2.223	2.35	2.36	0.6	99.4	0.0	0.37	0.12	0.36	0.86	4.66	2390	312	2	0	0	0	0	logfile
✔	7WQZ	32716	2024-07-18	2022-01-26	3.7	4.25	—	4.0	0.003	0.54	0.0	0.04	10.73	0.00	2.272	9.90	2.13	8.5	91.5	0.0	-4.46	0.81	0.74	1.55	4.1	0.003	0.79	0.0	0.05	13.84	0.00	2.120	19.16	3.79	12.0	88.0	0.0	-2.84	0.74	0.83	0.78	1.74	3974	496	4	0	9	0	0	logfile
✔	7WR7	32717	2024-07-18	2022-01-26	3.1	3.81	—	3.8	0.004	0.61	0.0	0.04	10.28	0.00	2.309	10.13	3.29	9.1	90.9	0.0	-4.53	0.72	0.72	2.80	3.8	0.005	1.32	1.0	0.05	14.27	0.01	2.136	16.41	2.35	12.8	87.2	0.0	-3.09	0.68	0.71	0.75	2.51	3995	496	4	0	10	0	0	logfile
✔	8PPo	17806	2024-07-18	2023-07-07	2.0	2.30	1.95	2.2	0.008	1.20	1.0	0.07	13.41	0.01	2.625	0.29	0.00	6.7	93.3	0.0	0.71	0.58	0.84	6.50	2.2	0.004	0.53	0.0	0.06	14.00	0.00	2.289	0.29	0.52	0.0	100.0	0.0	1.18	0.37	0.50	0.88	5.44	1696	240	16	0	0	0	0	logfile
✔	7Ji0	22341	2024-07-18	2020-07-21	2.95	3.30	3.08	3.2	0.003	0.48	0.0	0.04	12.97	0.00	2.233	3.94	5.91	4.5	95.5	0.0	-3.04	0.73	0.84	4.32	3.2	0.003	0.50	0.0	0.04	15.46	0.00	2.215	2.96	3.45	4.5	95.5	0.0	1.33	0.40	0.70	0.83	3.53	3556	432	4	0	0	0	0	logfile

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