Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8AZT	15771	2024-07-19	2022-09-06	3.7	3.48	2.93	4.2	0.011	1.98	0.0	0.11	15.54	0.01	0.000	19.56	4.35	10.3	89.7	0.0	-6.12	0.40	0.59	5.55	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5424	744	24	0	0	0	0	logfile
✘	8WMF	37651	2024-07-28	2023-10-03	2.51	3.17	2.58	3.0	0.003	0.51	0.0	0.04	12.96	0.00	0.000	5.47	0.00	4.3	95.7	0.0	0.17	0.79	0.77	3.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	43235	5370	25	0	90	0	0	logfile
✘	8BQV	16188	2024-07-19	2023-01-18	2.0	1.96	1.89	1.9	0.008	1.01	0.0	0.07	8.75	0.00	0.000	15.13	0.00	6.8	93.2	0.0	-2.59	0.54	0.77	8.69	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8595	1155	45	0	105	120	0	logfile
✘	8CE7	16600	2024-07-20	2023-02-01	2.7	2.34	2.46	2.7	0.010	1.47	12.0	0.09	13.19	0.01	0.000	16.57	3.33	9.0	91.0	0.0	-3.63	0.44	0.73	6.36	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10512	1512	24	0	0	0	0	logfile
✘	8JF1	36206	2024-07-22	2023-05-16	2.85	2.80	2.83	3.0	0.015	1.88	0.0	0.08	14.78	0.01	0.001	6.41	0.71	2.6	97.4	0.0	-1.90	0.66	0.83	4.26	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	16884	2052	8	0	32	8	0	logfile
✔	7EFD	31084	2024-07-18	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.003	0.71	0.0	0.04	14.51	0.00	1.848	6.17	0.00	4.4	95.6	0.0	0.99	0.47	0.80	0.84	6.22	4004	480	8	0	4	156	0	logfile
✘	7EFC	31083	2024-07-18	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	4004	480	8	0	4	156	0	logfile
✔	6ZP7	11337	2024-07-23	2020-07-08	3.3	4.01	3.43	3.7	0.013	0.92	0.0	0.17	16.89	0.00	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	3.7	0.003	0.76	0.0	0.11	14.70	0.00	0.794	10.08	2.15	3.4	96.6	0.0	0.14	1.34	0.81	0.84	2.03	23615	2861	33	0	92	0	0	logfile
✔	6ZP5	11336	2024-07-23	2020-07-08	3.1	3.90	3.32	3.6	0.013	0.92	0.0	0.15	16.89	0.00	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.005	0.78	0.0	0.11	14.58	0.00	0.790	10.44	1.95	4.1	95.9	0.0	0.18	0.68	0.83	0.85	2.14	23615	2861	33	0	92	0	0	logfile
✔	8UF0	42181	2024-07-24	2023-10-03	2.02	2.34	2.08	2.2	0.007	0.76	0.0	0.05	17.50	0.01	0.013	4.38	0.54	1.8	98.2	0.0	0.09	0.84	0.89	5.17	2.2	0.003	0.56	0.0	0.04	17.82	0.00	2.232	3.00	1.15	1.1	98.9	0.0	1.41	0.36	0.82	0.87	3.70	27000	3456	48	0	0	804	0	logfile
✘	8AZS	15770	2024-07-19	2022-09-06	2.9	2.78	2.55	2.8	0.011	1.50	0.0	0.12	16.09	0.01	0.017	1346.67	0.00	3.1	96.9	0.0	-1.98	0.27	0.40	5.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9036	1224	36	0	0	0	0	logfile
✘	8BQW	16189	2024-07-22	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✔	5Li4	4052	2024-07-22	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.1	0.005	1.06	2.0	0.05	13.91	0.01	2.083	35.90	0.00	16.6	82.5	0.9	-3.94	4.20	0.34	0.59	—	20070	2562	6	0	0	0	0	logfile
✔	3JC7	6536	2024-07-27	2015-11-24	4.8	5.23	—	4.8	0.009	1.57	7.0	0.07	12.16	0.01	0.163	42.92	0.45	8.5	90.1	1.3	-4.10	0.75	0.53	—	4.8	0.003	0.92	1.0	0.05	13.01	0.00	2.052	21.55	0.00	8.9	90.3	0.8	-1.33	2.54	0.84	0.72	—	40298	5075	12	0	1	0	0	logfile
✔	6FKi	4272	2024-07-27	2018-01-24	4.3	4.39	4.31	4.3	0.015	1.42	28.0	0.09	12.07	0.01	0.201	58.71	0.15	3.9	96.0	0.1	-0.17	0.63	0.65	—	4.3	0.006	0.92	9.0	0.06	13.84	0.01	1.406	23.36	0.05	4.0	95.9	0.1	0.58	1.25	0.69	0.77	—	39231	5201	31	0	10	0	0	logfile
✔	5ND1	3619	2024-07-21	2017-03-07	3.7	3.86	—	3.9	0.017	2.27	54.0	0.15	22.44	0.01	0.204	100.40	32.66	7.8	89.7	2.5	-2.95	0.47	0.82	1.08	3.9	0.005	0.84	0.0	0.05	18.47	0.00	2.069	15.66	9.47	10.2	89.3	0.5	-2.20	0.81	0.49	0.84	0.91	14963	1977	2	0	0	0	0	logfile
✔	8PDQ	17618	2024-07-26	2023-06-12	3.1	3.25	3.11	3.2	0.004	0.57	0.0	0.04	15.29	0.00	0.235	15.65	0.00	1.9	98.1	0.0	0.16	0.77	0.82	2.60	3.3	0.002	0.48	0.0	0.04	16.41	0.00	2.147	9.61	1.58	1.5	98.5	0.0	1.81	0.40	0.78	0.83	2.28	33176	4070	33	77	0	0	0	logfile
✘	5UCY	8539	2024-07-24	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25005	2610	12	3	6	0	4467	logfile
✔	6V4J	21041	2024-07-24	2019-11-27	2.97	2.66	—	2.6	0.010	1.79	8.0	0.09	13.20	0.01	0.244	16.47	5.36	4.0	95.7	0.3	-0.54	0.47	0.48	1.90	2.6	0.003	0.80	0.0	0.04	15.99	0.00	2.021	15.60	3.99	4.9	95.1	0.0	-1.37	1.49	0.50	0.52	1.55	20637	2697	8	0	0	0	0	logfile
✔	5FYW	3378	2024-07-28	2016-03-10	4.35	4.82	—	4.3	0.010	1.14	2.0	0.07	12.92	0.01	0.245	17.00	0.77	5.4	94.1	0.5	-2.84	0.80	0.75	—	4.3	0.005	0.75	0.0	0.04	14.52	0.00	1.914	20.04	0.02	6.3	93.5	0.2	0.22	2.89	0.83	0.81	—	41710	5176	30	94	11	0	0	logfile

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