Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7XSM	33427	2024-07-20	2022-05-14	4.01	4.70	4.03	4.0	0.002	0.47	0.0	0.03	24.50	0.00	1.969	7.06	0.00	0.0	0.0	0.0	—	0.90	0.75	—	4.0	0.007	0.78	0.0	0.04	26.67	0.01	1.798	49.89	0.00	0.0	0.0	0.0	—	1.72	0.92	0.82	—	12464	0	1	388	0	0	4165	logfile
✔	6LR0	31583	2024-07-20	2020-01-15	3.5	3.87	—	3.8	0.011	1.38	0.0	0.07	13.07	0.01	2.291	5.77	0.88	11.0	88.9	0.1	-6.35	0.66	0.78	1.71	3.8	0.003	0.73	0.0	0.04	15.67	0.00	2.193	9.36	3.02	7.3	92.7	0.0	-3.73	0.80	0.63	0.75	0.81	9576	1230	1	0	0	0	0	logfile
✔	7FiL	31602	2024-07-18	2021-07-31	3.0	2.84	—	3.6	0.008	1.05	2.0	0.06	18.46	0.01	2.213	19.35	8.76	7.7	91.1	1.2	-1.82	0.71	0.75	1.53	3.5	0.003	0.75	0.0	0.04	18.65	0.00	2.212	10.75	6.22	7.1	92.7	0.2	1.41	1.54	0.71	0.76	0.78	3993	504	1	0	0	0	0	logfile
✔	7XSK	33425	2024-07-20	2022-05-14	3.53	4.49	3.42	3.4	0.001	0.44	0.0	0.02	24.66	0.00	1.970	6.98	0.00	0.0	0.0	0.0	—	0.90	0.76	—	3.4	0.007	0.69	0.0	0.04	25.95	0.01	1.746	31.76	0.00	0.0	0.0	0.0	—	1.93	0.91	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	8C4S	16427	2024-07-20	2023-01-04	3.27	3.46	3.25	3.3	0.005	0.85	6.0	0.05	15.99	0.00	2.258	8.25	1.24	2.9	96.9	0.2	1.15	0.82	0.85	2.80	3.3	0.003	0.53	0.0	0.04	16.23	0.00	2.189	8.11	2.47	2.7	97.1	0.2	1.67	0.35	0.82	0.86	3.08	10292	1277	1	0	0	0	0	logfile
✔	7o3D	12704	2024-07-20	2021-04-01	3.71	4.15	3.79	4.0	0.003	0.77	0.0	0.05	13.17	0.01	2.146	6.21	0.00	4.2	95.8	0.0	-0.61	0.76	0.72	1.16	3.9	0.003	0.54	0.0	0.04	15.36	0.00	2.012	8.83	0.94	4.7	95.3	0.0	0.30	0.45	0.76	0.73	1.40	11458	709	1	0	0	0	5694	logfile
✔	8B0K	15786	2024-07-19	2022-09-07	3.0	3.23	3.08	3.2	0.002	0.52	0.0	0.04	9.63	0.00	2.276	7.40	0.50	3.1	96.9	0.0	0.56	0.57	0.83	5.07	3.2	0.003	0.58	0.0	0.04	13.42	0.00	2.242	7.92	2.51	3.5	96.5	0.0	0.92	0.88	0.59	0.85	4.48	3830	492	1	0	0	0	0	logfile
✔	8A06	15051	2024-07-18	2022-05-26	4.0	3.63	3.78	3.8	0.003	0.56	0.0	0.05	13.75	0.00	2.201	6.79	0.73	2.8	97.2	0.0	-0.86	0.27	0.78	—	3.7	0.003	0.61	0.0	0.05	17.11	0.00	2.273	4.67	8.76	4.1	95.9	0.0	-1.52	0.41	0.26	0.79	—	1185	147	1	0	0	0	0	logfile
✔	7S8U	24922	2024-07-19	2021-09-19	3.7	3.97	—	3.9	0.008	1.19	1.0	0.07	14.00	0.01	2.243	13.10	4.56	8.3	90.5	1.2	-1.14	0.48	0.59	0.59	3.9	0.003	0.77	0.0	0.04	16.55	0.00	2.152	16.26	5.44	9.2	90.5	0.3	-0.14	1.35	0.51	0.61	0.36	5210	667	1	0	0	0	0	logfile
✔	7XSN	33428	2024-07-19	2022-05-14	3.01	4.02	3.04	3.2	0.013	1.06	0.0	0.05	25.09	0.01	2.252	5.79	0.00	0.0	0.0	0.0	—	0.91	0.84	—	3.2	0.006	0.63	0.0	0.03	24.73	0.00	2.107	21.06	0.00	0.0	0.0	0.0	—	0.26	0.92	0.88	—	8279	0	1	387	0	0	0	logfile
✔	7FiJ	31599	2024-07-18	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.006	0.86	0.0	0.05	12.15	0.00	2.163	13.33	11.25	16.5	83.5	0.0	-1.70	0.74	0.62	0.56	2.72	3061	561	1	0	0	0	0	logfile
✔	7XSL	33426	2024-07-20	2022-05-14	3.84	4.65	3.83	3.7	0.002	0.47	0.0	0.02	24.69	0.00	1.935	8.02	0.00	0.0	0.0	0.0	—	0.91	0.77	—	3.8	0.007	0.71	0.0	0.04	25.81	0.01	1.808	34.33	0.00	0.0	0.0	0.0	—	1.01	0.92	0.83	—	12467	0	1	388	0	0	4168	logfile
✔	7PTQ	13633	2024-07-22	2021-09-27	4.08	6.47	4.22	4.0	0.005	0.78	0.0	0.04	23.49	0.00	1.983	0.92	0.00	0.0	0.0	0.0	—	0.91	0.80	—	4.0	0.006	0.69	0.0	0.04	27.08	0.00	1.850	44.28	0.00	0.0	0.0	0.0	—	2.75	0.96	0.94	—	17434	0	1	544	0	0	5847	logfile
✔	7o6B	12737	2024-07-21	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.003	0.56	0.0	0.04	14.18	0.00	1.998	10.09	2.15	4.7	95.3	0.0	0.51	0.77	0.76	0.70	0.37	14200	879	1	0	0	0	7040	logfile
✔	5M5H	4155	2024-07-18	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.003	0.85	0.0	0.05	12.37	0.01	2.369	17.88	0.00	7.9	92.1	0.0	-0.80	1.84	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	8HRU	34980	2024-07-18	2022-12-16	3.9	4.26	4.10	4.1	0.006	0.98	0.0	0.05	17.40	0.01	2.000	22.29	0.38	3.9	96.1	0.0	-1.28	0.75	0.69	0.45	4.1	0.003	0.76	0.0	0.05	18.02	0.00	2.082	20.18	2.47	4.9	95.1	0.0	-0.13	0.64	0.75	0.70	0.49	4870	597	1	0	0	0	0	logfile
✔	6ZPG	11338	2024-07-18	2020-07-08	4.6	4.29	—	7.0	0.004	0.99	0.0	0.05	15.64	0.01	2.313	5.51	0.25	5.6	94.4	0.0	-3.85	0.60	0.55	—	7.0	0.003	0.86	0.0	0.05	15.23	0.00	2.219	17.45	0.00	6.1	93.9	0.0	0.31	2.22	0.65	0.63	—	3808	463	1	0	0	0	0	logfile
✔	7K1V	22630	2024-07-19	2020-09-08	4.6	4.95	—	4.8	0.008	1.12	0.0	0.06	15.77	0.01	2.159	13.77	0.40	11.0	89.0	0.0	-4.04	0.71	0.71	—	4.7	0.004	0.76	0.0	0.05	14.29	0.01	2.112	31.34	0.20	9.1	90.9	0.0	-1.60	1.45	0.72	0.77	—	4971	626	1	0	0	0	0	logfile
✔	7PZR	13736	2024-07-21	2021-10-13	3.0	3.57	—	3.3	0.004	0.71	0.0	0.04	12.71	0.01	2.062	11.63	0.00	1.5	98.5	0.0	3.84	0.77	0.69	1.43	3.3	0.003	0.83	0.0	0.04	16.15	0.01	2.002	18.06	2.15	1.3	98.7	0.0	2.17	2.49	0.79	0.75	1.19	7404	935	1	0	0	0	0	logfile
✔	7oTi	13060	2024-07-19	2021-06-10	4.2	4.80	—	7.9	0.014	1.99	12.0	0.10	16.95	0.02	2.507	0.59	4.71	10.8	87.9	1.4	-3.63	0.36	0.23	—	4.9	0.003	0.81	0.0	0.04	14.46	0.00	2.116	16.85	0.00	6.6	92.9	0.5	-1.00	1.72	0.51	0.49	—	9171	1182	1	0	0	0	0	logfile

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