Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UVT	26816	2024-07-20	2022-05-02	3.9	4.17	4.00	4.1	0.001	0.41	0.0	0.02	24.65	0.00	1.897	6.61	0.00	0.0	0.0	0.0	—	0.76	0.74	—	4.1	0.006	0.72	0.0	0.04	24.99	0.01	1.910	21.84	0.00	0.0	0.0	0.0	—	0.48	0.77	0.77	—	12409	0	1	386	0	0	4149	logfile
✔	6JXC	9893	2024-07-21	2019-04-23	4.1	4.20	—	4.1	0.018	1.71	0.0	0.09	8.99	0.01	2.221	4.77	0.38	9.3	87.7	3.0	-1.28	0.50	0.61	—	4.1	0.003	0.80	0.0	0.04	12.11	0.00	2.106	10.45	0.00	11.6	86.4	2.0	0.22	0.97	0.55	0.69	—	15270	2345	1	0	0	0	0	logfile
✔	7Q5Z	13847	2024-07-20	2021-11-05	3.25	3.74	—	3.3	0.005	1.00	1.0	0.06	12.76	0.01	1.750	5.22	0.09	6.2	93.6	0.2	-2.07	0.80	0.69	1.18	3.4	0.004	0.69	0.0	0.05	14.20	0.00	2.146	16.72	2.22	6.3	93.5	0.2	-0.81	1.18	0.81	0.73	1.45	10489	1344	1	0	0	0	0	logfile
✔	8A9B	15275	2024-07-19	2022-06-28	4.0	4.28	3.95	4.1	0.004	0.88	0.0	0.05	14.89	0.00	2.113	20.52	0.00	14.8	84.2	1.0	-3.17	0.67	0.58	—	4.1	0.003	0.77	0.0	0.04	17.28	0.00	2.160	18.41	2.86	14.1	85.2	0.7	-2.81	0.54	0.71	0.63	—	6386	809	1	0	0	0	0	logfile
✔	6JXA	9892	2024-07-21	2019-04-23	4.3	4.65	—	4.2	0.017	1.81	3.0	0.10	9.08	0.01	1.926	29.72	2.04	12.2	79.3	8.5	-2.72	0.49	0.42	—	4.2	0.003	0.91	0.0	0.04	11.23	0.00	2.163	16.74	0.00	15.9	81.4	2.7	-1.48	0.92	0.65	0.61	—	14100	2244	1	0	0	0	0	logfile
✔	7KTW	23032	2024-07-19	2020-11-24	4.27	4.73	—	4.4	0.007	1.12	0.0	0.05	12.46	0.01	2.214	14.28	0.12	5.1	94.9	0.0	-4.61	0.81	0.82	—	4.4	0.003	0.77	0.0	0.04	13.36	0.00	2.188	19.30	0.12	3.1	96.9	0.0	0.30	0.88	0.80	0.80	—	7577	995	1	0	0	0	0	logfile
✔	6XoU	22280	2024-07-19	2020-07-07	4.0	4.67	4.02	4.1	0.005	1.06	0.0	0.06	13.63	0.01	2.261	4.13	0.23	2.8	97.2	0.0	-1.51	0.89	0.75	—	4.1	0.003	0.84	0.0	0.04	14.96	0.00	2.140	12.32	1.17	2.7	97.3	0.0	1.24	1.78	0.91	0.85	—	7697	965	1	0	0	0	0	logfile
✔	7Q60	13848	2024-07-20	2021-11-05	3.13	3.73	—	3.4	0.007	1.26	1.0	0.07	15.64	0.01	2.271	5.00	0.57	5.2	94.8	0.1	-2.64	0.77	0.74	1.79	3.4	0.004	0.68	0.0	0.04	16.02	0.00	2.106	12.29	4.47	5.7	94.2	0.1	-1.02	0.44	0.77	0.76	1.79	9450	1212	1	0	0	0	0	logfile
✔	7PTL	13630	2024-07-23	2021-09-27	4.9	10.06	4.95	—	0.005	1.01	0.0	0.06	23.55	0.01	2.401	0.61	0.00	0.0	0.0	0.0	—	0.88	0.79	—	—	0.007	0.87	0.0	0.04	27.76	0.01	1.723	81.11	0.00	0.0	0.0	0.0	—	3.51	0.92	0.92	—	23080	0	1	720	0	0	7743	logfile
✔	7PN1	13545	2024-07-20	2021-09-04	3.9	4.15	3.83	4.0	0.002	0.57	0.0	0.04	12.95	0.00	2.053	6.26	0.00	2.8	97.2	0.0	1.31	0.61	0.80	1.17	4.0	0.003	0.54	0.0	0.04	14.63	0.00	1.935	7.71	1.07	3.1	96.9	0.0	1.67	0.98	0.60	0.80	0.70	10384	657	1	0	0	0	5237	logfile
✔	7P03	13142	2024-07-23	2021-06-29	3.45	3.78	—	3.7	0.006	0.68	0.0	0.04	13.86	0.00	1.801	6.52	0.00	5.4	94.6	0.0	-0.70	0.62	0.71	1.37	3.7	0.003	0.55	0.0	0.04	15.83	0.00	1.904	7.00	1.05	4.4	95.6	0.0	0.82	0.85	0.63	0.77	1.97	21149	1333	1	0	0	0	10498	logfile
✔	6XoT	22279	2024-07-19	2020-07-07	3.9	4.56	3.90	4.1	0.006	1.07	0.0	0.06	14.01	0.01	2.272	5.76	0.23	2.8	97.2	0.0	-1.51	0.86	0.74	0.81	4.2	0.003	0.82	0.0	0.05	15.95	0.00	2.097	17.28	1.40	2.6	97.4	0.0	0.90	1.81	0.87	0.80	1.12	7704	966	1	0	0	0	0	logfile
✔	7KTT	23029	2024-07-19	2020-11-24	4.17	4.46	—	4.2	0.007	1.04	0.0	0.06	13.23	0.01	2.239	12.66	0.25	5.7	94.3	0.0	-5.41	0.81	0.78	—	4.2	0.005	0.78	0.0	0.05	13.84	0.00	2.110	24.86	0.00	4.6	95.4	0.0	-0.23	0.70	0.81	0.77	—	7568	994	1	0	0	0	0	logfile
✔	7KTU	23030	2024-07-19	2020-11-24	4.15	4.49	—	4.2	0.006	1.05	0.0	0.05	12.61	0.01	2.259	12.91	0.37	4.3	95.7	0.0	-5.35	0.81	0.79	—	4.2	0.003	0.75	0.0	0.04	13.20	0.00	2.120	19.88	0.00	3.6	96.4	0.0	0.22	0.88	0.80	0.77	—	7577	995	1	0	0	0	0	logfile
✔	7FJM	31623	2024-07-19	2021-08-04	3.3	3.57	—	3.5	0.014	1.57	16.0	0.12	11.98	0.01	2.194	5.81	3.44	9.2	90.3	0.5	-4.28	0.65	0.76	2.17	3.5	0.003	0.73	0.0	0.04	14.00	0.01	2.186	7.52	3.71	8.3	91.4	0.3	-1.42	1.68	0.66	0.82	1.49	7086	973	1	0	0	0	0	logfile
✔	6XoS	22278	2024-07-19	2020-07-07	3.7	4.30	3.63	3.9	0.009	1.09	0.0	0.06	13.21	0.01	2.225	2.95	0.00	2.4	97.6	0.0	-1.45	0.89	0.82	1.85	3.9	0.005	0.78	0.0	0.04	14.35	0.00	2.144	11.59	0.70	2.5	97.5	0.0	1.43	0.98	0.89	0.86	1.84	7704	966	1	0	0	0	0	logfile
✔	7RYQ	24745	2024-07-18	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.9	0.003	0.74	0.0	0.04	14.12	0.01	2.126	14.78	0.00	6.8	93.2	0.0	-0.17	1.21	0.85	0.76	—	4332	527	1	0	0	0	0	logfile
✔	7KTV	23031	2024-07-19	2020-11-24	4.5	4.83	—	4.5	0.006	1.06	0.0	0.06	12.50	0.01	2.221	17.73	0.12	6.5	93.5	0.0	-5.20	0.80	0.79	—	6.7	0.003	0.73	0.0	0.04	12.96	0.00	2.137	23.67	0.12	4.9	95.1	0.0	-0.33	0.82	0.80	0.78	—	7577	995	1	0	0	0	0	logfile
✔	7JGF	22325	2024-07-18	2020-07-19	4.69	4.81	—	4.8	0.002	0.62	0.0	0.04	13.16	0.01	2.109	26.74	0.41	4.6	95.4	0.0	-0.87	0.39	0.43	—	4.7	0.002	0.48	0.0	0.04	13.25	0.00	2.145	50.93	0.41	5.2	94.8	0.0	1.11	0.62	0.41	0.44	—	4477	532	1	0	0	0	30	logfile
✔	8H8B	34541	2024-07-19	2022-10-22	3.16	3.37	3.20	3.3	0.001	0.46	0.0	0.04	13.00	0.00	2.226	6.42	0.67	6.3	93.7	0.0	-2.99	0.70	0.76	2.74	3.3	0.002	0.63	0.0	0.04	15.44	0.00	2.252	7.10	2.25	9.3	90.7	0.0	-1.80	0.62	0.74	0.84	3.61	8344	1027	1	0	0	0	0	logfile

• Page 1 of 579
• next →