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peach highlight: initial model; blue highlight: re-refined model
Status | PDB code | EMDB code | Date processed | Release Date | Resolution | D99 | DFSC | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | CCbox | CCmask | EMRinger | DModel | Bond rmsd | Angle rmsd | Cβ devts | Chirality | Dihedral rmsd | Plane rmsd | Min nonbonded | Clashscore | Rota outliers | Rama allowed | Rama favored | Rama outliers | Z-score | RMSD | CCbox | CCmask | EMRinger | # atoms | # residues | # chains | # nucleotides | # other | # water | # H | Logfile |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
✔ | 7K8A | 22724 | 2024-07-20 | 2020-09-26 | 3.65 | 3.57 | — | 3.7 | 0.004 | 0.92 | 1.0 | 0.05 | 13.38 | 0.01 | 2.226 | 16.09 | 0.17 | 6.4 | 93.6 | 0.0 | -1.30 | 0.40 | 0.55 | 0.67 | 3.7 | 0.004 | 0.82 | 0.0 | 0.04 | 15.98 | 0.01 | 2.180 | 17.79 | 5.44 | 5.7 | 94.2 | 0.1 | -0.95 | 0.44 | 0.43 | 0.57 | 0.27 | 5513 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R9E | 24324 | 2024-07-19 | 2021-06-29 | 4.0 | 4.83 | — | 3.9 | 0.002 | 0.37 | 0.0 | 0.04 | 4.45 | 0.00 | 2.277 | 3.11 | 0.00 | 9.9 | 88.7 | 1.4 | -3.58 | 0.87 | 0.80 | — | 3.9 | 0.003 | 0.59 | 0.0 | 0.04 | 9.14 | 0.00 | 2.120 | 9.84 | 0.98 | 5.4 | 94.6 | 0.0 | -0.26 | 2.08 | 0.88 | 0.82 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 7EEi | 31077 | 2024-07-20 | 2021-03-18 | 3.6 | 3.44 | — | 3.4 | 0.006 | 1.09 | 0.0 | 0.06 | 13.71 | 0.01 | 1.975 | 5.03 | 0.00 | 0.1 | 99.9 | 0.0 | -1.90 | 0.77 | 0.77 | 1.99 | 3.4 | 0.003 | 0.63 | 0.0 | 0.04 | 15.24 | 0.00 | 2.178 | 8.49 | 3.27 | 4.9 | 95.1 | 0.0 | 0.28 | 1.24 | 0.80 | 0.79 | 2.09 | 9825 | 1400 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7PTX | 13642 | 2024-07-19 | 2021-09-27 | 4.03 | 4.17 | — | 3.9 | 0.003 | 0.76 | 0.0 | 0.05 | 14.08 | 0.01 | 2.202 | 19.18 | 0.00 | 10.6 | 89.4 | 0.0 | -1.97 | 0.84 | 0.72 | — | 3.9 | 0.003 | 0.76 | 0.0 | 0.05 | 14.47 | 0.00 | 2.241 | 19.24 | 0.00 | 10.5 | 89.5 | 0.0 | -1.28 | 0.52 | 0.85 | 0.74 | — | 7653 | 1000 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7BWM | 30233 | 2024-07-22 | 2020-04-15 | 2.9 | 2.97 | — | 2.9 | 0.005 | 0.78 | 0.0 | 0.05 | 14.24 | 0.00 | 2.048 | 7.32 | 7.21 | 5.8 | 94.0 | 0.3 | -3.28 | 0.76 | 0.85 | 4.49 | 2.9 | 0.002 | 0.60 | 0.0 | 0.04 | 15.34 | 0.00 | 2.137 | 6.73 | 2.53 | 5.0 | 95.0 | 0.0 | -0.90 | 0.88 | 0.78 | 0.87 | 3.45 | 9532 | 1219 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R9o | 24330 | 2024-07-19 | 2021-06-29 | 4.0 | 4.66 | — | 4.0 | 0.002 | 0.38 | 0.0 | 0.04 | 4.49 | 0.00 | 2.252 | 2.85 | 0.25 | 10.5 | 88.7 | 0.8 | -4.93 | 0.83 | 0.71 | — | 4.0 | 0.003 | 0.61 | 0.0 | 0.04 | 10.79 | 0.00 | 1.908 | 12.95 | 0.98 | 4.0 | 96.0 | 0.0 | -0.48 | 3.44 | 0.88 | 0.83 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 5G2Y | 3332 | 2024-07-21 | 2016-04-16 | 4.5 | 4.38 | — | 3.8 | 0.001 | 0.22 | 0.0 | 0.01 | 22.50 | 0.00 | 2.269 | 2.32 | 0.00 | 0.0 | 0.0 | 0.0 | — | 0.58 | 0.28 | — | 3.7 | 0.007 | 1.01 | 0.0 | 0.05 | 28.52 | 0.01 | 1.951 | 72.85 | 0.00 | 0.0 | 0.0 | 0.0 | — | 2.98 | 0.89 | 0.78 | — | 13494 | 0 | 1 | 630 | 0 | 0 | 0 | logfile |
✔ | 6iG9 | 9664 | 2024-07-22 | 2018-09-25 | 4.6 | 5.44 | 4.27 | 4.3 | 0.007 | 1.07 | 0.0 | 0.05 | 9.51 | 0.01 | 2.299 | 9.69 | 0.73 | 10.2 | 89.7 | 0.2 | -3.99 | 0.69 | 0.65 | — | 4.2 | 0.003 | 0.66 | 0.0 | 0.04 | 5.17 | 0.00 | 2.218 | 2.46 | 0.00 | 9.7 | 90.3 | 0.0 | 0.91 | 1.56 | 0.87 | 0.72 | — | 17122 | 3386 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R1Y | 14243 | 2024-07-19 | 2022-02-03 | 3.0 | 3.01 | 2.95 | 3.0 | 0.002 | 0.52 | 0.0 | 0.04 | 13.13 | 0.00 | 2.252 | 6.47 | 3.44 | 2.9 | 97.1 | 0.0 | 0.36 | 0.72 | 0.71 | 2.29 | 3.0 | 0.003 | 0.59 | 0.0 | 0.04 | 16.24 | 0.00 | 2.118 | 13.02 | 3.44 | 3.7 | 96.3 | 0.0 | 1.14 | 1.12 | 0.73 | 0.73 | 2.12 | 5704 | 723 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7AWA | 11928 | 2024-07-19 | 2020-11-06 | 3.5 | 3.83 | — | 3.6 | 0.003 | 0.64 | 0.0 | 0.04 | 14.22 | 0.00 | 2.126 | 6.77 | 0.00 | 5.8 | 94.2 | 0.0 | -2.52 | 0.57 | 0.81 | 2.14 | 3.6 | 0.003 | 0.50 | 0.0 | 0.04 | 15.16 | 0.00 | 2.159 | 7.52 | 0.34 | 4.6 | 95.4 | 0.0 | -0.74 | 1.17 | 0.54 | 0.81 | 1.66 | 5310 | 328 | 1 | 0 | 0 | 0 | 2703 | logfile |
✔ | 7R9K | 24328 | 2024-07-19 | 2021-06-29 | 4.1 | 4.93 | — | 4.0 | 0.002 | 0.35 | 0.0 | 0.04 | 4.65 | 0.00 | 2.223 | 3.24 | 0.00 | 10.3 | 89.1 | 0.6 | -4.05 | 0.83 | 0.71 | — | 4.1 | 0.002 | 0.53 | 0.0 | 0.04 | 8.08 | 0.00 | 1.906 | 9.97 | 0.00 | 4.4 | 95.6 | 0.0 | 0.09 | 2.08 | 0.89 | 0.83 | — | 7726 | 505 | 1 | 0 | 0 | 0 | 3938 | logfile |
✔ | 6PZB | 20533 | 2024-07-19 | 2019-07-31 | 4.55 | 4.69 | — | 4.5 | 0.009 | 1.24 | 0.0 | 0.06 | 8.37 | 0.01 | 2.231 | 3.11 | 0.00 | 5.9 | 94.1 | 0.0 | -3.87 | 0.62 | 0.76 | — | 4.5 | 0.004 | 0.69 | 0.0 | 0.04 | 8.79 | 0.00 | 1.993 | 7.50 | 0.00 | 7.2 | 92.8 | 0.0 | 0.89 | 0.61 | 0.64 | 0.78 | — | 7747 | 1357 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7R9U | 24331 | 2024-07-19 | 2021-06-29 | 4.4 | 5.41 | — | 4.3 | 0.002 | 0.34 | 0.0 | 0.04 | 4.36 | 0.00 | 2.248 | 3.50 | 0.00 | 9.1 | 90.3 | 0.6 | -4.49 | 0.78 | 0.62 | — | 4.3 | 0.003 | 0.52 | 0.0 | 0.04 | 8.28 | 0.00 | 1.920 | 9.32 | 0.00 | 3.4 | 96.6 | 0.0 | 0.39 | 2.36 | 0.91 | 0.84 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 7R9M | 24329 | 2024-07-19 | 2021-06-29 | 4.0 | 4.58 | — | 3.9 | 0.002 | 0.38 | 0.0 | 0.04 | 4.68 | 0.00 | 2.214 | 3.88 | 0.00 | 8.3 | 90.9 | 0.8 | -4.83 | 0.85 | 0.77 | — | 3.9 | 0.002 | 0.54 | 0.0 | 0.04 | 9.11 | 0.00 | 2.104 | 8.80 | 0.74 | 3.2 | 96.8 | 0.0 | -0.14 | 1.72 | 0.86 | 0.78 | — | 7727 | 505 | 1 | 0 | 0 | 0 | 3939 | logfile |
✔ | 6XoW | 22282 | 2024-07-19 | 2020-07-07 | 4.6 | 8.17 | 4.40 | 7.0 | 0.006 | 1.00 | 0.0 | 0.05 | 13.39 | 0.01 | 1.991 | 24.14 | 0.23 | 4.2 | 95.8 | 0.0 | -0.98 | 0.87 | 0.72 | — | 6.9 | 0.004 | 0.76 | 0.0 | 0.04 | 13.50 | 0.01 | 2.102 | 27.41 | 0.23 | 4.6 | 95.4 | 0.0 | 0.07 | 1.90 | 0.92 | 0.82 | — | 7711 | 966 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 3KTT | 5148 | 2024-07-18 | 2009-11-25 | 4.0 | 2.33 | — | 4.5 | 0.020 | 2.86 | 20.0 | 0.20 | 15.20 | 0.01 | 1.652 | 179.94 | 7.82 | 6.3 | 89.4 | 4.3 | -0.59 | 0.27 | 0.28 | — | 2.1 | 0.005 | 1.19 | 0.0 | 0.06 | 17.22 | 0.01 | 2.007 | 33.74 | 4.89 | 10.6 | 88.3 | 1.2 | -2.44 | 1.71 | 0.31 | 0.42 | — | 3855 | 513 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6PZC | 20534 | 2024-07-19 | 2019-07-31 | 4.34 | 4.63 | — | 4.4 | 0.008 | 1.12 | 0.0 | 0.06 | 11.22 | 0.01 | 2.137 | 7.52 | 0.42 | 9.7 | 90.3 | 0.0 | -5.15 | 0.60 | 0.54 | — | 4.4 | 0.004 | 0.75 | 0.0 | 0.04 | 11.33 | 0.00 | 2.087 | 13.46 | 0.00 | 6.9 | 93.0 | 0.1 | -0.07 | 1.65 | 0.70 | 0.78 | — | 7456 | 1173 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 6WYK | 21967 | 2024-07-18 | 2020-05-13 | 4.0 | 4.14 | — | 4.2 | 0.007 | 0.77 | 0.0 | 0.05 | 11.98 | 0.00 | 2.223 | 5.97 | 0.00 | 3.4 | 96.6 | 0.0 | -2.28 | 0.62 | 0.77 | — | 4.2 | 0.004 | 0.77 | 0.0 | 0.04 | 16.10 | 0.00 | 2.204 | 10.05 | 4.29 | 1.9 | 98.1 | 0.0 | 2.01 | 0.80 | 0.62 | 0.78 | — | 3083 | 415 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 8QSM | 18636 | 2024-07-18 | 2023-10-10 | 3.69 | 4.23 | 3.52 | 4.0 | 0.002 | 0.48 | 0.0 | 0.03 | 10.37 | 0.00 | 2.269 | 4.15 | 3.75 | 3.5 | 96.5 | 0.0 | 2.22 | 0.55 | 0.76 | 0.70 | 4.0 | 0.003 | 0.87 | 0.0 | 0.04 | 15.54 | 0.00 | 2.035 | 14.93 | 3.49 | 3.5 | 96.5 | 0.0 | 1.79 | 1.46 | 0.56 | 0.78 | 0.87 | 3579 | 464 | 1 | 0 | 0 | 0 | 0 | logfile |
✔ | 7K11 | 22620 | 2024-07-20 | 2020-09-06 | 3.21 | 3.34 | — | 3.3 | 0.005 | 0.92 | 0.0 | 0.05 | 15.33 | 0.01 | 2.271 | 4.65 | 0.46 | 9.6 | 90.3 | 0.1 | -5.00 | 0.69 | 0.76 | 1.74 | 3.3 | 0.003 | 0.63 | 0.0 | 0.04 | 16.77 | 0.00 | 2.188 | 7.70 | 2.56 | 9.1 | 90.9 | 0.0 | -1.19 | 1.22 | 0.71 | 0.78 | 1.35 | 10011 | 1254 | 1 | 0 | 0 | 0 | 0 | logfile |