Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8F1i	28797	2024-07-25	2022-11-05	3.0	3.91	—	3.4	0.003	0.53	0.0	0.04	14.60	0.00	2.170	5.59	0.89	3.4	96.6	0.0	-1.10	0.88	0.84	2.24	3.4	0.008	0.70	0.0	0.05	16.14	0.00	2.121	7.15	0.99	4.6	95.4	0.0	0.22	1.18	0.91	0.87	1.98	30670	3678	14	91	3	8	0	logfile
✔	7Y5Z	33629	2024-07-20	2022-06-18	3.4	3.66	3.34	3.5	0.008	1.03	0.0	0.06	14.62	0.01	2.210	4.56	0.96	7.2	92.8	0.0	-4.63	0.66	0.83	3.22	3.5	0.007	0.79	0.0	0.05	14.61	0.00	2.160	10.58	4.91	6.7	93.3	0.0	-0.44	1.68	0.68	0.85	2.41	9962	1214	13	0	25	0	0	logfile
✘	6L3H	0822	2024-07-20	2019-10-11	3.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11966	1482	4	0	8	0	0	logfile
✔	7D68	30590	2024-07-19	2020-09-29	3.0	3.24	—	3.3	0.004	0.66	0.0	0.05	13.07	0.00	2.121	7.98	0.76	4.8	95.1	0.1	-2.09	0.62	0.77	3.53	3.3	0.003	0.57	0.0	0.04	15.98	0.00	2.086	7.86	2.48	4.2	95.8	0.0	0.25	0.50	0.62	0.78	2.83	8564	1070	8	0	0	7	0	logfile
✘	7CGN	30358	2024-07-21	2020-07-01	4.3	4.32	—	4.2	0.006	1.12	0.0	0.06	16.92	0.01	2.225	7.81	6.36	9.4	89.8	0.7	-5.60	0.68	0.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15854	2092	14	0	2	0	0	logfile
✔	7D09	30527	2024-07-22	2020-09-09	3.6	3.73	—	3.7	0.007	1.11	0.0	0.06	17.11	0.01	2.181	15.50	8.59	9.3	89.5	1.2	-6.00	0.72	0.81	2.38	3.7	0.004	0.86	0.0	0.04	16.92	0.00	2.069	9.62	4.48	7.6	92.4	0.0	-1.81	1.29	0.73	0.83	1.77	17802	2374	14	0	2	0	0	logfile
✔	6K4Y	9916	2024-07-26	2019-05-27	3.79	3.88	—	3.9	0.008	0.98	0.0	0.06	15.11	0.01	2.242	8.96	0.68	7.6	92.3	0.1	-4.54	0.61	0.69	1.81	3.8	0.003	0.66	0.0	0.04	17.81	0.00	2.080	10.49	2.75	6.2	93.8	0.0	-0.87	2.02	0.70	0.77	1.08	33247	3950	11	105	3	0	0	logfile
✔	8B0P	15791	2024-07-19	2022-09-07	2.86	3.13	2.92	3.1	0.003	0.55	2.0	0.34	12.11	0.01	2.235	5.12	0.97	3.2	96.6	0.2	-0.43	0.58	0.84	4.71	3.1	0.003	0.55	0.0	0.04	14.02	0.00	2.246	7.37	0.49	3.0	97.0	0.0	0.65	0.32	0.57	0.84	4.24	4016	510	3	0	1	0	0	logfile
✘	5SY1	8315	2024-07-20	2016-08-10	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11462	1458	8	0	10	0	0	logfile
✔	7TK0	25948	2024-07-22	2022-01-17	4.4	6.63	4.39	4.1	0.019	2.21	0.0	0.00	6.55	0.01	2.394	0.08	0.00	3.9	94.5	1.5	-0.40	0.58	0.62	—	4.1	0.003	0.80	0.0	0.00	5.24	0.00	2.105	7.94	0.00	8.9	90.9	0.3	-0.45	0.81	0.83	0.81	—	20220	5054	27	0	0	0	0	logfile
✘	5GJW	9515	2024-07-23	2016-07-02	3.9	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21561	2676	15	0	29	0	0	logfile
✔	6MGV	9112	2024-07-20	2018-09-15	3.1	3.21	3.10	3.2	0.018	1.44	0.0	0.08	9.73	0.01	2.082	2.85	0.00	3.4	96.5	0.2	-0.38	0.70	0.83	4.59	3.2	0.003	0.62	0.0	0.04	14.04	0.00	1.985	6.63	1.04	3.5	96.5	0.0	1.61	2.11	0.67	0.84	3.05	10150	1268	2	0	0	0	0	logfile
✔	6iG0	9660	2024-07-22	2018-09-21	3.37	3.49	—	3.4	0.009	1.18	5.0	0.07	14.28	0.01	1.102	14.78	1.40	10.4	89.4	0.1	-5.65	0.75	0.80	2.88	3.4	0.003	0.72	0.0	0.04	17.81	0.00	1.916	14.44	3.39	9.3	90.6	0.0	-2.16	1.35	0.76	0.82	2.02	19354	2258	11	67	5	0	0	logfile
✔	7Y26	33586	2024-07-19	2022-06-09	3.3	3.67	3.39	3.7	0.003	0.57	0.0	0.04	12.62	0.00	1.328	4.71	0.00	3.0	97.0	0.0	0.69	0.66	0.80	3.02	3.6	0.004	0.65	0.0	0.04	14.68	0.00	2.052	4.84	1.84	3.7	96.2	0.1	0.24	0.39	0.66	0.82	2.67	8014	1111	7	0	2	0	0	logfile
✔	6LYY	30019	2024-07-18	2020-02-16	3.2	3.40	—	3.9	0.010	1.16	9.0	0.10	13.41	0.01	2.152	14.46	0.90	8.3	91.7	0.0	-3.75	0.38	0.51	1.45	3.7	0.003	0.72	0.0	0.04	16.05	0.00	2.168	9.81	5.09	4.1	95.9	0.0	0.37	1.23	0.45	0.66	1.55	4104	597	3	0	1	0	0	logfile
✘	5GJV	9513	2024-07-23	2016-07-02	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	21904	2661	15	0	43	0	0	logfile
✔	8F7W	28911	2024-07-19	2022-11-20	3.19	3.44	3.14	3.4	0.004	0.80	0.0	0.06	8.29	0.01	2.282	3.96	0.10	1.9	98.1	0.0	-1.80	0.58	0.75	1.92	3.4	0.002	0.56	0.0	0.04	13.32	0.00	2.181	7.25	2.13	2.2	97.8	0.0	1.33	0.61	0.62	0.82	2.27	9087	1145	7	0	5	0	0	logfile
✔	5XMi	6733	2024-07-21	2017-05-15	3.9	3.93	—	3.9	0.009	1.29	3.0	0.07	13.75	0.01	2.342	1.57	1.10	8.9	88.6	2.5	-3.05	0.61	0.63	0.60	3.9	0.004	0.79	0.0	0.04	17.51	0.01	2.116	18.67	4.47	8.6	90.9	0.5	-0.88	1.77	0.65	0.69	0.49	14969	1914	11	0	5	0	0	logfile
✔	6iFY	9658	2024-07-22	2018-09-21	3.8	4.00	—	3.9	0.005	1.03	3.0	0.06	16.97	0.01	1.733	12.36	0.81	10.7	89.0	0.3	-5.14	0.71	0.73	1.09	3.9	0.005	0.80	0.0	0.05	18.62	0.00	2.059	22.67	2.99	11.1	88.8	0.1	-2.79	1.33	0.72	0.76	1.03	19085	2253	11	62	1	0	0	logfile
✔	8A01	15044	2024-07-19	2022-05-26	3.2	3.25	3.20	3.2	0.002	0.44	0.0	0.05	14.81	0.00	2.289	4.13	0.00	2.0	98.0	0.0	0.02	0.48	0.86	2.87	3.2	0.002	0.47	0.0	0.05	17.00	0.00	2.265	4.93	2.22	2.5	97.5	0.0	-0.45	0.25	0.47	0.87	2.60	5511	717	3	0	0	0	0	logfile

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