Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MCA	23755	2024-07-24	2021-04-01	3.6	3.75	3.58	3.8	0.007	0.98	0.0	0.06	19.39	0.01	1.053	8.11	0.75	8.2	91.7	0.1	-5.13	0.77	0.79	2.32	3.7	0.004	0.67	0.0	0.04	20.10	0.00	1.935	10.74	3.07	7.9	92.1	0.0	-1.94	1.96	0.76	0.81	2.01	24692	2760	13	100	8	0	0	logfile
✔	6SCJ	10141	2024-07-27	2019-07-24	3.6	3.92	—	3.8	0.005	0.99	0.0	0.06	11.34	0.01	2.235	4.85	0.14	13.3	86.6	0.1	-4.97	0.78	0.76	1.82	3.8	0.003	0.73	0.0	0.04	13.88	0.00	2.017	11.22	2.22	10.7	89.3	0.0	-2.09	1.24	0.79	0.78	1.40	39884	5102	6	0	36	0	0	logfile
✘	7VH6	31988	2024-07-27	2021-09-21	3.8	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	38202	4608	12	0	63	0	0	logfile
✔	7V3L	31683	2024-07-27	2021-08-10	3.47	2.97	—	2.8	0.012	1.55	41.0	0.10	14.53	0.01	2.080	14.40	7.18	10.2	87.9	1.9	-1.28	0.73	0.61	1.27	2.8	0.007	0.94	0.0	0.05	15.49	0.01	1.955	19.35	2.49	12.1	87.6	0.3	-1.85	1.40	0.80	0.75	1.54	36238	4710	9	0	0	0	0	logfile
✔	7F8N	31490	2024-07-22	2021-07-02	3.4	3.52	3.33	3.5	0.012	1.08	0.0	0.04	18.97	0.01	2.219	10.34	2.55	4.7	95.3	0.0	-0.91	0.62	0.81	2.45	3.5	0.004	0.58	0.0	0.04	16.20	0.00	2.167	12.39	2.49	4.2	95.8	0.0	-0.04	0.45	0.60	0.85	2.12	18522	2163	14	0	49	0	0	logfile
✔	7SYF	25524	2024-07-20	2021-11-24	4.2	3.03	3.92	2.2	0.013	1.86	8.0	0.10	14.32	0.01	2.460	1.62	1.31	3.9	96.1	0.0	-1.56	0.67	0.61	—	2.2	0.003	0.71	0.0	0.04	14.17	0.00	2.133	15.23	0.08	3.6	96.4	0.0	1.06	1.12	0.68	0.64	—	11108	1391	1	0	0	0	0	logfile
✔	7V5J	31725	2024-07-27	2021-08-17	2.8	3.15	—	2.5	0.013	1.55	32.0	0.11	14.16	0.00	1.014	9.67	9.26	4.6	94.3	1.0	1.20	0.80	0.66	1.10	2.6	0.007	0.95	0.0	0.05	15.61	0.01	1.974	19.70	3.27	8.6	91.0	0.5	-1.04	1.05	0.86	0.79	1.89	36189	4707	9	0	0	0	0	logfile
✔	6MZU	9307	2024-07-26	2018-11-05	3.4	3.56	—	3.5	0.006	0.72	0.0	0.05	8.11	0.01	2.309	6.63	0.03	2.5	97.5	0.0	-4.73	0.78	0.85	4.19	3.5	0.003	0.64	0.0	0.04	14.50	0.00	2.196	12.17	2.98	1.6	98.4	0.0	-0.34	1.61	0.81	0.88	3.63	32833	4523	42	0	0	0	0	logfile
✔	7NKQ	12446	2024-07-20	2021-02-18	2.98	3.25	—	3.1	0.004	0.49	0.0	0.04	13.52	0.00	2.018	7.16	0.00	2.7	97.3	0.0	1.39	0.81	0.81	2.98	3.1	0.003	0.48	0.0	0.04	15.76	0.00	2.004	6.87	0.87	2.4	97.6	0.0	2.34	0.33	0.82	0.84	2.51	10621	714	8	0	0	0	5312	logfile
✘	6GEN	4396	2024-07-28	2018-04-27	3.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	44481	4683	29	346	151	0	0	logfile
✘	8QZC	18774	2024-07-20	2023-10-26	3.29	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	11468	1402	4	0	4	0	0	logfile
✔	8P36	17384	2024-07-18	2023-05-17	2.51	3.15	2.51	3.0	0.005	0.63	0.0	0.04	18.62	0.00	2.195	6.55	5.51	2.5	97.5	0.0	1.15	0.34	0.90	2.74	3.0	0.002	0.52	0.0	0.04	18.37	0.00	2.293	5.32	3.15	3.8	96.2	0.0	1.34	0.48	0.29	0.87	3.15	1223	161	2	0	2	0	0	logfile
✔	7FAF	31503	2024-07-26	2021-07-06	3.69	3.84	—	3.7	0.011	1.81	37.0	0.10	18.61	0.01	1.315	23.38	13.67	10.3	88.8	0.9	-3.17	0.78	0.67	1.18	3.7	0.007	0.90	2.0	0.05	16.72	0.01	1.804	16.36	3.32	6.4	93.5	0.1	-1.33	1.14	0.85	0.81	1.58	33288	4298	9	0	0	0	0	logfile
✔	6YE4	10789	2024-07-20	2020-03-24	3.2	3.33	3.07	3.3	0.026	1.69	0.0	0.10	15.50	0.01	2.373	3.02	0.00	0.9	99.1	0.0	-3.36	0.73	0.88	2.50	3.3	0.003	0.49	0.0	0.03	16.57	0.00	2.366	5.02	1.44	2.1	97.9	0.0	4.18	0.92	0.65	0.85	1.22	9140	1180	10	0	5	0	0	logfile
✔	5WEL	8820	2024-07-25	2017-07-10	4.4	4.52	—	4.4	0.006	0.98	0.0	0.64	19.47	0.01	2.206	6.86	0.61	6.5	93.4	0.1	-4.07	0.69	0.68	—	4.4	0.003	0.92	0.0	0.08	14.55	0.00	2.160	13.79	0.00	5.4	94.6	0.0	-0.13	1.46	0.75	0.78	—	27638	3484	8	0	6	0	0	logfile
✔	8AA4	15293	2024-07-21	2022-06-29	3.1	3.54	2.92	3.2	0.001	0.41	0.0	0.04	7.46	0.00	2.240	3.52	0.00	2.7	97.2	0.1	0.39	0.73	0.88	4.17	3.2	0.003	0.53	0.0	0.04	10.05	0.00	2.112	4.01	0.20	3.5	96.4	0.1	0.00	0.93	0.73	0.89	3.87	13616	1742	2	0	0	0	0	logfile
✔	7ZDi	14650	2024-07-20	2022-03-29	2.9	3.06	2.82	3.1	0.005	0.93	0.0	0.04	13.22	0.01	2.378	3.63	0.00	0.9	99.1	0.0	1.10	0.64	0.84	5.30	3.1	0.004	0.80	0.0	0.04	14.73	0.00	2.187	5.70	0.25	0.4	99.6	0.0	3.58	0.27	0.69	0.87	4.33	10284	976	38	0	42	0	0	logfile
✔	5YFP	6827	2024-07-26	2017-09-21	4.4	8.20	—	6.7	0.006	1.35	0.0	0.06	12.26	0.01	2.215	16.92	0.10	17.8	81.5	0.7	-6.11	0.83	0.34	—	5.5	0.004	1.01	0.0	0.05	10.83	0.00	2.033	24.85	0.10	16.3	83.5	0.2	-2.27	3.38	0.90	0.70	—	33096	5982	8	0	0	0	0	logfile
✔	6MZV	9308	2024-07-26	2018-11-05	3.4	3.57	—	3.5	0.006	0.73	0.0	0.05	8.48	0.01	2.343	7.17	0.34	3.4	96.6	0.0	-4.51	0.79	0.86	4.27	3.5	0.005	0.68	0.0	0.05	15.04	0.00	2.149	11.93	3.16	1.6	98.4	0.0	-0.31	1.25	0.82	0.89	3.69	32833	4523	42	0	0	0	0	logfile
✔	6Z97	11119	2024-07-28	2020-06-03	3.4	3.50	—	3.4	0.004	0.61	0.0	0.05	12.08	0.00	2.205	5.13	0.73	4.7	95.3	0.0	-0.75	0.77	0.82	3.10	3.4	0.003	0.54	0.0	0.04	13.34	0.00	1.987	5.57	1.25	4.5	95.4	0.0	-0.10	1.03	0.79	0.84	2.84	45362	2975	17	0	49	0	21895	logfile

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