Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✘	8TDV	41174	2024-07-20	2023-07-05	3.44	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10957	1740	8	13	2	0	0	logfile
✔	6SCJ	10141	2024-07-27	2019-07-24	3.6	3.92	—	3.8	0.005	0.99	0.0	0.06	11.34	0.01	2.235	4.85	0.14	13.3	86.6	0.1	-4.97	0.78	0.76	1.82	3.8	0.003	0.73	0.0	0.04	13.88	0.00	2.017	11.22	2.22	10.7	89.3	0.0	-2.09	1.24	0.79	0.78	1.40	39884	5102	6	0	36	0	0	logfile
✘	7YHo	33832	2024-07-18	2022-07-14	3.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3923	361	4	49	1	0	0	logfile
✔	7USD	26733	2024-07-23	2022-04-25	3.0	3.11	3.03	3.0	0.004	0.70	2.0	0.05	14.52	0.00	2.207	7.15	0.15	1.8	98.2	0.0	3.36	0.80	0.81	2.15	3.0	0.002	0.55	0.0	0.04	17.11	0.00	1.981	5.78	1.20	1.6	98.4	0.0	2.89	0.61	0.87	0.88	2.02	23226	2864	7	0	2	0	0	logfile
✘	7TNJ	26011	2024-07-22	2022-01-21	4.02	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18810	2402	8	0	4	0	0	logfile
✔	8oPB	17047	2024-07-23	2023-04-07	3.58	3.97	3.72	3.9	0.004	0.89	0.0	0.04	15.41	0.01	2.325	9.17	0.63	5.0	94.4	0.6	-1.65	0.53	0.83	2.42	3.9	0.003	0.79	0.0	0.04	16.06	0.01	2.144	11.52	2.65	4.6	95.4	0.0	-0.06	0.54	0.56	0.83	2.13	23328	2896	16	0	0	0	0	logfile
✔	6N1W	9320	2024-07-26	2018-11-12	4.2	4.55	—	4.3	0.006	0.93	0.0	0.06	16.20	0.01	2.314	5.82	7.06	5.3	94.7	0.0	-3.05	0.81	0.80	—	4.3	0.004	0.77	0.0	0.05	12.51	0.00	2.021	18.50	0.00	7.8	92.1	0.0	-1.26	1.40	0.83	0.83	—	31905	3852	66	0	138	0	0	logfile
✔	6ZG1	11191	2024-07-20	2020-06-18	3.77	4.58	—	4.3	0.010	1.61	6.0	0.11	18.79	0.01	2.449	4.87	5.94	2.0	97.9	0.1	-1.53	0.76	0.67	0.74	4.3	0.006	1.21	1.0	0.06	18.00	0.00	1.892	26.76	2.28	4.8	95.1	0.1	-0.02	1.64	0.78	0.79	1.12	9931	1175	16	0	28	0	0	logfile
✔	7P5V	13202	2024-07-27	2021-07-15	3.06	2.83	2.99	2.9	0.004	0.51	0.0	0.04	11.64	0.00	2.106	9.09	3.53	3.4	96.6	0.0	-0.53	0.75	0.73	1.90	2.8	0.002	0.54	0.0	0.04	14.60	0.00	2.134	9.65	2.60	3.5	96.5	0.0	-0.13	1.45	0.77	0.77	1.74	41274	5034	12	0	0	0	0	logfile
✔	6EF3	9045	2024-07-28	2018-08-15	4.17	3.04	—	3.8	0.016	1.11	0.0	0.07	12.10	0.01	1.340	5.80	0.07	14.7	85.2	0.0	-5.91	0.65	0.81	—	3.8	0.004	0.73	0.0	0.05	13.33	0.00	2.118	8.74	0.02	6.4	93.6	0.0	-1.93	0.75	0.66	0.82	—	44271	5824	30	0	6	0	0	logfile
✔	7P5W	13203	2024-07-28	2021-07-15	3.5	2.99	3.45	3.0	0.002	0.49	0.0	0.04	11.73	0.00	2.131	10.96	3.75	4.4	95.6	0.0	-0.37	0.72	0.70	1.03	2.8	0.003	0.62	0.0	0.04	15.30	0.00	2.130	15.87	2.47	5.9	94.1	0.0	-0.79	0.78	0.69	0.64	0.96	41250	5028	12	0	0	0	0	logfile
✔	6N24	9322	2024-07-20	2018-11-12	3.0	3.88	—	3.7	0.007	0.78	0.0	0.05	9.04	0.01	2.332	3.60	0.29	3.6	96.4	0.0	-6.07	0.73	0.84	3.71	3.8	0.003	0.64	0.0	0.04	13.80	0.00	2.128	6.81	1.58	1.7	98.3	0.0	0.36	2.29	0.63	0.73	2.82	12643	1530	5	0	0	0	0	logfile
✔	7E8E	31016	2024-07-23	2021-03-01	3.9	3.55	3.78	3.8	0.004	0.68	0.0	0.04	14.76	0.00	2.130	16.00	0.04	7.0	92.9	0.2	-0.20	0.65	0.73	1.56	3.5	0.004	0.92	1.0	0.04	17.28	0.00	2.137	18.70	3.74	6.1	93.9	0.1	0.00	0.64	0.65	0.75	1.53	21380	2662	12	0	0	0	0	logfile
✔	7PBS	13301	2024-07-26	2021-08-02	3.3	2.55	—	3.2	0.005	0.71	0.0	0.05	14.97	0.01	1.778	1.66	0.25	0.7	99.3	0.0	-0.18	0.65	0.77	3.13	3.2	0.003	0.56	0.0	0.04	17.20	0.00	1.747	3.03	0.94	2.2	97.8	0.0	1.34	1.72	0.70	0.82	2.25	31328	1918	15	30	11	0	15439	logfile
✔	7V6N	31743	2024-07-26	2021-08-20	3.99	2.98	—	3.3	0.013	1.54	22.0	0.11	13.59	0.00	1.225	8.65	8.11	4.0	94.9	1.1	1.46	0.71	0.48	0.48	2.9	0.004	0.79	0.0	0.04	14.80	0.00	2.058	18.41	3.09	8.1	91.6	0.3	-1.35	1.51	0.78	0.62	1.00	34448	4663	9	0	0	0	0	logfile
✔	7F8o	31491	2024-07-22	2021-07-02	3.6	3.69	3.45	3.7	0.008	0.88	0.0	0.04	15.89	0.00	2.106	8.68	0.71	4.6	95.4	0.0	0.47	0.61	0.82	3.06	3.6	0.003	0.68	0.0	0.04	16.67	0.00	2.145	12.64	2.44	5.7	94.3	0.0	-0.02	0.97	0.61	0.83	2.57	18032	2184	14	0	21	0	0	logfile
✔	7UGP	26493	2024-07-24	2022-03-25	4.2	3.87	4.16	3.5	0.006	1.00	1.0	0.07	16.08	0.01	0.835	6.55	0.52	6.7	93.3	0.0	-4.45	0.81	0.72	—	3.5	0.003	0.73	0.0	0.05	13.82	0.00	2.154	12.30	0.04	6.9	93.1	0.0	-2.30	2.08	0.85	0.78	—	25047	3096	34	0	66	0	0	logfile
✔	6EF0	9042	2024-07-24	2018-08-15	4.43	3.84	—	4.1	0.011	1.07	0.0	0.06	13.02	0.01	2.089	8.55	0.00	16.8	83.2	0.0	-5.24	0.62	0.79	—	4.1	0.003	0.77	0.0	0.04	13.24	0.00	2.076	11.28	0.08	7.2	92.8	0.0	-2.05	2.19	0.62	0.79	—	24748	3318	20	0	6	0	0	logfile
✔	7RZ5	24751	2024-07-22	2021-08-27	3.3	3.18	—	3.4	0.010	1.19	0.0	0.05	15.37	0.01	2.368	1.91	0.35	3.5	96.5	0.0	-5.41	0.72	0.83	3.34	3.3	0.003	0.57	0.0	0.04	15.98	0.00	2.268	4.18	2.31	2.5	97.5	0.0	0.90	0.62	0.75	0.87	3.22	16770	2046	8	0	28	0	0	logfile
✔	6MZU	9307	2024-07-26	2018-11-05	3.4	3.56	—	3.5	0.006	0.72	0.0	0.05	8.11	0.01	2.309	6.63	0.03	2.5	97.5	0.0	-4.73	0.78	0.85	4.19	3.5	0.003	0.64	0.0	0.04	14.50	0.00	2.196	12.17	2.98	1.6	98.4	0.0	-0.34	1.61	0.81	0.88	3.63	32833	4523	42	0	0	0	0	logfile

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