Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G3K	29700	2024-07-18	2023-02-08	2.2	2.34	2.21	2.3	0.002	0.36	0.0	0.03	9.98	0.00	2.348	3.50	0.00	0.7	99.3	0.0	5.07	0.46	0.82	4.79	2.3	0.003	0.48	0.0	0.03	17.08	0.00	2.386	4.15	2.88	0.7	99.3	0.0	4.64	1.15	0.47	0.83	5.16	2244	285	2	0	0	0	0	logfile
✘	8SEB	40409	2024-07-20	2023-04-08	3.24	3.49	3.29	3.4	0.005	0.58	0.0	0.04	12.08	0.00	2.213	7.32	1.74	4.4	95.5	0.1	0.67	0.65	0.72	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9609	1223	4	0	1	0	0	logfile
✔	8Hi1	34809	2024-07-23	2022-11-18	3.09	3.43	3.24	3.4	0.005	0.69	0.0	0.04	17.86	0.00	1.947	11.15	0.00	9.4	90.6	0.0	-6.18	0.58	0.73	2.49	3.4	0.003	0.61	0.0	0.04	18.98	0.00	2.063	8.62	1.92	7.3	92.7	0.0	-2.26	1.14	0.58	0.76	2.27	20998	1234	8	57	0	0	10143	logfile
✔	8i6J	35199	2024-07-19	2023-01-28	3.82	4.03	3.74	4.0	0.003	0.70	0.0	0.05	14.72	0.00	2.265	7.93	0.17	9.6	90.4	0.0	-0.94	0.63	0.71	0.83	4.0	0.003	0.70	0.0	0.04	16.74	0.00	2.265	9.98	2.23	9.9	90.1	0.0	-0.74	0.49	0.63	0.72	0.58	5287	670	3	0	1	0	0	logfile
✔	8B4i	15849	2024-07-19	2022-09-20	3.32	3.85	3.38	3.7	0.004	0.62	0.0	0.04	16.41	0.00	2.205	3.85	0.24	1.5	98.5	0.0	0.59	0.62	0.85	3.66	3.6	0.005	0.68	0.0	0.04	14.25	0.00	2.227	8.01	2.07	2.1	97.9	0.0	1.26	1.02	0.60	0.83	2.95	8242	1026	14	0	9	0	0	logfile
✔	8oi6	16887	2024-07-20	2023-03-22	3.59	3.91	3.62	3.8	0.005	0.64	0.0	0.04	16.97	0.00	1.310	7.71	0.24	1.8	98.1	0.1	0.35	0.77	0.84	1.96	3.8	0.004	0.64	0.0	0.04	16.52	0.00	1.929	9.54	1.46	2.5	97.4	0.1	0.94	0.38	0.77	0.85	1.72	11573	1464	14	0	11	0	0	logfile
✔	8W8Q	37356	2024-07-19	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	2.9	0.003	0.56	0.0	0.04	16.29	0.00	2.227	8.06	3.64	1.8	98.2	0.0	1.32	1.10	0.71	0.86	3.51	8168	1044	5	0	0	0	0	logfile
✔	7YBM	33726	2024-07-25	2022-06-29	3.45	3.55	3.44	3.5	0.004	0.77	0.0	0.05	16.15	0.00	2.092	8.18	0.07	4.7	95.1	0.2	-0.61	0.67	0.64	1.90	3.5	0.003	0.69	0.0	0.04	14.37	0.00	2.163	8.90	1.56	4.9	95.0	0.1	-0.64	0.66	0.74	0.75	1.98	27456	3309	39	0	114	0	0	logfile
✔	8C5U	16443	2024-07-20	2023-01-10	3.62	3.71	3.65	3.7	0.005	0.77	0.0	0.05	18.43	0.00	2.189	7.66	0.00	3.0	97.0	0.0	1.11	0.78	0.81	1.61	3.7	0.003	0.60	0.0	0.04	19.15	0.00	2.149	9.34	2.06	2.8	97.2	0.0	1.08	1.05	0.78	0.82	1.52	11419	1248	6	71	1	0	0	logfile
✔	8JSH	36620	2024-07-26	2023-06-20	4.4	7.17	4.35	3.5	0.004	0.73	0.0	0.04	26.04	0.00	1.974	26.44	0.00	7.1	92.5	0.4	-1.35	0.86	0.79	—	3.4	0.006	0.84	0.0	0.04	25.60	0.01	1.976	40.95	0.00	10.2	89.5	0.3	-1.51	1.47	0.86	0.81	—	34331	1432	14	1074	0	0	0	logfile
✔	7ZoX	14849	2024-07-19	2022-04-26	4.4	3.95	4.37	3.8	0.005	0.72	0.0	0.04	15.62	0.00	2.219	17.13	0.14	7.7	92.3	0.0	-4.40	0.84	0.80	—	3.8	0.003	0.66	0.0	0.04	15.03	0.00	2.234	14.24	0.00	4.8	95.2	0.0	-0.57	0.72	0.84	0.78	—	6772	852	3	0	0	0	0	logfile
✔	8RU2	19503	2024-07-21	2024-01-29	3.49	3.82	3.54	3.7	0.002	0.55	0.0	0.04	18.07	0.00	1.974	9.72	0.37	3.5	96.4	0.2	-0.23	0.71	0.73	1.08	3.7	0.003	0.61	0.0	0.04	18.22	0.00	1.991	11.11	3.17	3.9	96.0	0.2	0.33	1.33	0.72	0.76	0.69	14773	1849	8	0	6	0	0	logfile
✔	8GPi	34193	2024-07-22	2022-08-26	3.0	2.28	2.93	2.1	0.005	0.76	0.0	0.05	14.80	0.00	2.188	5.16	0.00	2.2	97.8	0.0	0.49	0.78	0.78	3.49	2.1	0.003	0.58	0.0	0.04	14.01	0.00	2.189	5.39	1.94	2.3	97.7	0.0	0.88	1.12	0.79	0.81	3.09	20265	2364	50	0	132	0	0	logfile
✔	8FD2	29000	2024-07-24	2022-12-01	3.65	4.42	3.76	3.9	0.003	0.57	0.0	0.04	17.94	0.00	2.136	9.87	2.84	5.4	94.3	0.3	0.44	0.76	0.58	0.67	3.9	0.005	0.83	0.0	0.04	19.08	0.01	2.081	29.54	3.67	6.6	93.2	0.2	-0.63	1.21	0.83	0.74	0.94	25797	2979	13	63	0	0	0	logfile
✔	8SNY	40642	2024-07-21	2023-04-28	3.41	3.37	3.52	3.4	0.004	0.62	1.0	0.04	15.35	0.00	1.932	13.38	0.33	3.5	96.5	0.0	0.92	0.71	0.81	2.02	3.4	0.003	0.61	1.0	0.04	17.30	0.00	2.173	14.21	2.99	3.4	96.6	0.0	0.85	0.36	0.72	0.84	1.77	13744	1680	6	8	0	0	0	logfile
✔	8T15	40955	2024-07-24	2023-06-01	2.7	2.92	2.77	2.9	0.002	0.53	0.0	0.04	16.28	0.00	2.440	0.55	0.00	1.5	98.5	0.0	1.81	0.63	0.80	6.01	2.9	0.003	0.51	0.0	0.04	17.30	0.00	2.031	1.79	1.28	1.9	98.1	0.0	1.52	0.78	0.61	0.82	5.29	25656	1608	12	0	0	0	12612	logfile
✔	8SDZ	40355	2024-07-18	2023-04-07	2.86	3.25	2.87	3.2	0.003	0.59	0.0	0.04	16.55	0.00	2.135	4.33	1.43	0.8	99.2	0.0	0.91	0.56	0.82	2.83	3.2	0.002	0.53	0.0	0.04	16.31	0.00	2.111	5.48	2.86	1.6	98.4	0.0	2.11	0.45	0.57	0.83	2.49	3913	500	2	0	1	22	0	logfile
✔	8J1H	35922	2024-07-27	2023-04-12	3.88	4.37	3.89	4.3	0.009	0.76	0.0	0.07	13.71	0.00	1.927	21.46	0.19	12.0	87.5	0.5	-1.29	0.66	0.67	1.48	4.3	0.003	0.68	0.0	0.07	15.59	0.00	1.949	17.17	1.58	10.3	89.4	0.3	-0.88	0.44	0.66	0.68	1.34	38464	2356	8	0	4	0	19324	logfile
✔	8RFE	19118	2024-07-23	2023-12-12	3.8	4.63	3.96	4.1	0.003	0.61	0.0	0.04	16.60	0.00	2.148	11.81	0.14	7.6	91.6	0.8	-0.82	0.84	0.80	0.80	4.1	0.003	0.70	0.0	0.04	14.44	0.00	2.035	16.23	0.68	8.7	90.6	0.7	-0.54	0.40	0.85	0.84	0.97	21776	2765	3	0	12	0	0	logfile
✔	8H4U	34484	2024-07-19	2022-10-11	3.5	3.38	3.50	3.4	0.002	0.59	0.0	0.04	18.36	0.00	2.218	8.59	1.28	5.1	94.9	0.0	0.05	0.75	0.82	1.33	3.4	0.004	0.60	0.0	0.04	18.54	0.00	2.240	9.22	2.45	6.0	94.0	0.0	1.82	1.01	0.74	0.82	0.82	7944	959	1	0	0	0	0	logfile

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