Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8SiE	40507	2024-07-20	2023-04-16	2.7	2.88	2.78	2.9	0.005	0.67	0.0	0.17	21.89	0.01	1.491	5.47	0.19	3.7	96.3	0.0	1.29	0.63	0.84	2.81	2.9	0.002	0.52	0.0	0.04	15.95	0.00	2.166	5.65	1.72	4.1	95.9	0.0	1.55	0.32	0.62	0.86	2.83	10398	1226	4	0	38	0	0	logfile
✔	8BHQ	16066	2024-07-24	2022-10-31	3.3	3.04	3.34	3.4	0.002	0.41	0.0	0.04	7.98	0.01	2.140	1.61	0.00	1.8	98.2	0.0	2.16	0.67	0.80	3.80	3.4	0.002	0.51	0.0	0.04	12.73	0.00	2.046	3.11	0.40	2.0	98.0	0.0	1.75	1.34	0.67	0.81	3.31	27215	1680	10	0	10	0	13415	logfile
✔	8Q9D	18277	2024-07-19	2023-08-20	3.16	2.76	3.06	3.1	0.011	1.80	0.0	0.08	9.92	0.01	2.504	0.00	0.00	5.0	95.0	0.0	-1.95	0.30	0.76	6.33	3.1	0.002	0.51	0.0	0.05	14.39	0.00	2.195	2.42	1.52	1.1	98.9	0.0	-0.87	1.29	0.36	0.85	5.81	7032	450	6	0	0	0	3588	logfile
✔	8Q98	18271	2024-07-19	2023-08-20	1.75	1.75	1.77	1.8	0.011	1.66	0.0	0.07	9.83	0.01	2.543	0.00	0.00	0.5	99.5	0.0	-0.80	0.22	0.65	8.64	1.8	0.002	0.49	0.0	0.05	13.57	0.00	2.336	2.28	0.51	0.2	99.8	0.0	-0.44	0.91	0.43	0.90	7.94	7032	450	6	0	0	0	3588	logfile
✔	8Q9H	18281	2024-07-19	2023-08-20	2.18	2.03	2.10	2.2	0.011	1.73	0.0	0.08	10.93	0.01	2.517	0.00	0.00	2.8	97.2	0.0	-1.19	0.33	0.77	6.36	2.2	0.002	0.54	0.0	0.05	16.15	0.00	2.065	1.47	0.26	1.9	98.1	0.0	-1.45	1.80	0.41	0.86	6.16	6822	438	6	0	0	0	3480	logfile
✔	8PoE	17789	2024-07-20	2023-07-04	4.2	4.40	4.17	4.5	0.003	0.64	0.0	0.04	14.20	0.00	2.265	9.34	0.00	2.8	97.2	0.0	1.48	0.57	0.71	—	4.5	0.002	0.61	0.0	0.04	14.54	0.00	2.226	7.81	0.00	2.7	97.3	0.0	1.46	1.15	0.57	0.72	—	10947	1371	3	0	0	0	0	logfile
✔	8Q8W	18263	2024-07-19	2023-08-19	2.85	2.92	2.74	2.9	0.011	1.75	0.0	0.09	11.10	0.01	2.483	0.00	0.00	2.9	97.1	0.0	-1.38	0.29	0.78	6.35	2.9	0.002	0.47	0.0	0.05	15.76	0.00	2.331	0.91	0.54	0.7	99.3	0.0	-0.61	1.98	0.39	0.89	6.58	6618	429	6	0	0	0	3372	logfile
✔	8SC6	40339	2024-07-18	2023-04-04	3.13	3.36	3.12	3.4	0.003	0.50	0.0	0.03	8.71	0.00	2.273	3.28	0.81	0.9	99.1	0.0	2.80	0.58	0.82	2.08	3.4	0.002	0.45	0.0	0.03	12.42	0.00	2.239	4.14	2.43	0.9	99.1	0.0	3.18	0.96	0.58	0.83	2.18	3479	447	2	0	1	0	0	logfile
✔	8Q9B	18275	2024-07-19	2023-08-20	3.1	3.13	2.97	3.1	0.011	1.79	0.0	0.08	10.91	0.01	2.521	0.00	0.00	4.1	95.9	0.0	-1.61	0.35	0.78	6.63	3.1	0.002	0.48	0.0	0.05	14.65	0.00	2.367	1.57	1.52	0.2	99.8	0.0	-0.77	1.30	0.38	0.86	6.29	7032	450	6	0	0	0	3588	logfile
✔	8PQW	17826	2024-07-26	2023-07-12	4.2	4.43	4.16	3.5	0.004	0.86	0.0	0.05	14.74	0.01	1.844	6.08	0.03	3.5	96.5	0.0	-1.66	0.84	0.76	—	3.6	0.002	0.56	0.0	0.04	14.41	0.00	1.975	10.92	0.00	3.0	97.0	0.0	1.78	0.35	0.84	0.77	—	30491	4035	10	0	6	0	0	logfile
✔	8Q9E	18278	2024-07-19	2023-08-20	2.97	2.51	2.93	2.7	0.011	1.89	2.0	0.11	11.77	0.01	2.528	0.59	1.32	1.9	98.1	0.0	-1.47	0.25	0.73	5.90	2.7	0.002	0.57	0.0	0.05	16.68	0.01	2.249	3.25	0.53	1.2	98.8	0.0	-1.41	1.29	0.35	0.83	4.43	6768	432	6	0	0	0	3456	logfile
✔	8Q8Y	18265	2024-07-19	2023-08-19	2.88	2.50	2.59	2.7	0.011	1.89	4.0	0.11	12.93	0.01	2.516	0.00	0.00	2.3	97.7	0.0	-1.68	0.26	0.75	5.62	2.7	0.002	0.53	0.0	0.05	17.29	0.00	2.053	2.18	1.55	1.9	98.1	0.0	-1.41	1.19	0.35	0.88	5.17	6896	441	6	0	0	0	3521	logfile
✔	8UMP	42381	2024-07-23	2023-10-18	2.92	3.27	3.11	3.3	0.007	0.74	0.0	0.04	19.06	0.01	2.226	7.20	0.69	0.4	99.6	0.0	1.18	0.67	0.87	4.31	3.3	0.002	0.48	0.0	0.03	18.90	0.00	2.266	8.06	2.34	1.0	99.0	0.0	3.70	0.38	0.69	0.87	3.90	21432	2724	24	0	0	0	0	logfile
✔	8JLJ	36399	2024-07-19	2023-06-02	3.1	2.95	2.70	3.0	0.008	0.99	3.0	0.06	13.60	0.01	2.256	8.09	0.82	3.9	96.1	0.0	-0.40	0.65	0.81	3.07	3.0	0.002	0.54	0.0	0.04	15.90	0.00	2.233	4.81	1.96	3.5	96.5	0.0	1.01	0.55	0.71	0.86	3.10	8918	1132	6	0	1	0	0	logfile
✔	8oL3	16944	2024-07-18	2023-03-30	3.5	3.67	1.73	4.2	0.009	0.67	0.0	0.06	9.52	0.01	2.263	7.26	0.00	0.0	100.0	0.0	-0.18	0.42	0.77	3.49	4.2	0.002	0.42	0.0	0.06	15.96	0.00	2.325	11.29	2.00	4.5	95.5	0.0	-0.61	0.85	0.34	0.71	4.20	4970	330	10	0	0	0	2500	logfile
✔	8FKJ	29250	2024-07-24	2022-12-21	4.2	4.36	4.26	4.0	0.003	0.66	0.0	0.04	5.09	0.00	2.167	6.77	0.00	9.9	89.9	0.1	-0.50	0.66	0.65	—	4.0	0.002	0.52	0.0	0.04	4.07	0.00	2.191	3.93	0.00	8.9	91.0	0.1	0.18	0.40	0.66	0.67	—	25001	5088	27	0	0	0	0	logfile
✔	8GZ9	34393	2024-07-18	2022-09-26	2.62	2.44	2.40	2.4	0.003	0.69	0.0	0.06	14.01	0.00	2.670	1.93	0.00	0.3	99.7	0.0	-0.15	0.28	0.90	7.26	2.4	0.002	0.53	0.0	0.06	14.22	0.00	2.674	1.16	3.10	0.6	99.4	0.0	-0.04	0.26	0.28	0.91	7.99	2426	390	58	0	0	24	0	logfile
✔	8HF4	34712	2024-07-19	2022-11-09	2.8	3.66	3.29	3.5	0.006	0.75	1.0	0.05	14.96	0.00	2.207	5.73	1.11	4.7	94.9	0.4	2.04	0.73	0.86	1.86	3.5	0.002	0.54	0.0	0.04	16.70	0.00	2.197	5.40	1.11	4.2	95.8	0.0	2.45	0.95	0.70	0.84	1.90	8916	1126	4	0	2	0	0	logfile
✔	8EDN	28037	2024-07-18	2022-09-05	3.8	3.47	3.75	3.3	0.002	0.58	0.0	0.04	11.31	0.00	2.205	6.81	0.46	5.7	94.1	0.2	2.77	0.65	0.60	0.13	3.3	0.002	0.58	0.0	0.03	13.70	0.00	2.177	7.12	3.23	3.7	96.1	0.2	2.99	1.03	0.70	0.71	2.12	3683	579	1	0	0	0	0	logfile
✔	8EDL	28035	2024-07-18	2022-09-05	3.7	3.30	3.60	3.1	0.002	0.52	0.0	0.03	11.07	0.00	2.307	6.09	0.00	2.1	97.7	0.3	2.83	0.62	0.61	-0.09	3.1	0.002	0.56	0.0	0.03	13.85	0.00	2.336	7.26	3.08	2.1	97.9	0.0	3.82	1.11	0.68	0.73	2.47	2470	395	1	0	0	0	0	logfile

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