Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8D9N	27267	2024-07-19	2022-06-10	4.4	4.74	3.88	34.0	0.003	0.60	0.0	0.04	13.21	0.00	2.107	2.77	0.38	5.8	94.2	0.0	-0.81	0.28	-0.07	—	20.0	0.002	0.66	0.0	0.04	13.37	0.00	2.199	4.56	0.00	5.3	94.7	0.0	0.51	0.56	0.36	-0.05	—	7186	902	2	0	0	0	0	logfile
✔	5M6S	3451	2024-07-18	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.3	0.003	0.60	0.0	0.03	17.87	0.00	1.962	10.68	0.00	7.3	92.7	0.0	2.28	2.21	0.03	0.01	—	1593	98	1	0	0	0	793	logfile
✔	8P50	17435	2024-07-21	2023-05-23	4.04	5.40	4.05	3.9	0.004	0.88	0.0	0.05	14.21	0.01	1.901	6.41	0.00	4.7	95.3	0.0	-1.98	0.62	0.03	—	3.9	0.003	0.68	0.0	0.04	13.99	0.00	1.858	7.85	0.14	4.0	95.9	0.1	0.56	1.31	0.61	0.02	—	13714	1735	3	0	2	0	0	logfile
✔	6RJU	4906	2024-07-18	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.56	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	3.9	0.003	0.66	0.0	0.03	15.97	0.00	2.278	7.54	1.01	7.0	93.0	0.0	-0.88	1.30	0.30	0.04	1.02	1992	131	1	0	0	0	997	logfile
✔	8J5Y	33733	2024-07-20	2023-04-24	3.07	3.50	3.24	20.0	0.004	0.84	0.0	0.05	13.88	0.01	2.153	12.97	0.00	6.0	93.7	0.3	-1.55	0.08	0.00	0.39	3.4	0.003	0.74	0.0	0.04	15.95	0.00	2.112	15.74	2.42	7.6	92.3	0.1	-1.26	1.56	0.12	0.06	0.26	10905	1389	4	0	0	0	0	logfile
✔	7V66	31736	2024-07-26	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	4.1	0.006	1.44	8.0	0.04	15.60	0.01	2.233	16.30	1.61	4.1	95.9	0.0	3.25	1.24	0.14	0.12	-0.77	33216	4128	24	0	0	0	0	logfile
✔	8FD5	29002	2024-07-18	2022-12-02	4.57	4.19	—	10.0	0.016	2.15	4.0	0.13	13.14	0.02	2.541	0.16	0.29	3.8	96.2	0.0	-1.38	0.28	0.02	—	3.6	0.002	0.67	0.0	0.04	13.21	0.01	2.134	9.88	0.00	6.0	94.0	0.0	-1.15	1.23	0.39	0.12	—	3214	419	1	0	0	0	0	logfile
✔	6REU	4857	2024-07-26	2019-04-12	4.2	4.32	4.74	30.0	0.006	0.99	0.0	0.06	15.16	0.01	1.681	9.40	0.42	5.7	94.1	0.1	-4.88	0.21	0.03	—	30.0	0.003	0.69	0.0	0.04	13.96	0.00	1.910	15.49	0.03	4.5	95.4	0.1	-0.79	0.93	0.24	0.13	—	33899	4503	25	0	10	0	0	logfile
✔	7CHH	30374	2024-07-25	2020-07-05	3.49	2.44	—	20.0	0.007	1.10	0.0	0.06	15.26	0.01	2.182	4.90	3.56	5.2	94.7	0.1	-2.03	0.17	0.02	0.23	2.3	0.012	1.29	1.0	0.06	16.28	0.01	1.869	25.45	2.38	8.1	91.9	0.0	-2.12	1.44	0.21	0.14	0.46	29029	3704	17	0	41	0	0	logfile
✔	5M5H	4155	2024-07-18	2016-10-21	4.5	2.29	—	2.2	0.007	1.50	0.0	0.08	12.37	0.01	2.186	39.89	0.00	8.7	88.9	2.4	-5.94	0.14	0.14	—	2.1	0.003	0.85	0.0	0.05	12.37	0.01	2.369	17.88	0.00	7.9	92.1	0.0	-0.80	1.84	0.15	0.14	—	1086	132	1	0	0	0	0	logfile
✔	7XMX	33307	2024-07-25	2022-04-27	3.62	3.63	3.44	22.0	0.012	1.30	7.0	0.09	12.65	0.01	1.407	4.82	1.34	6.6	93.3	0.1	-0.95	0.29	0.01	0.23	21.0	0.003	0.66	0.0	0.04	14.30	0.00	2.124	10.64	2.04	5.6	94.3	0.1	-0.83	1.07	0.32	0.14	0.16	28727	3700	12	0	24	0	0	logfile
✔	6RED	4850	2024-07-26	2019-04-12	3.0	3.22	3.14	27.0	0.012	1.04	0.0	0.06	14.61	0.01	2.140	5.83	0.31	4.7	95.2	0.1	-3.86	0.16	0.02	0.19	27.0	0.003	0.69	0.0	0.04	15.79	0.00	1.949	15.30	2.13	4.1	95.8	0.1	-0.02	0.95	0.23	0.14	0.26	33899	4503	25	0	10	0	0	logfile
✔	8UQ6	42462	2024-07-20	2023-10-23	3.6	5.71	2.81	39.0	0.016	2.36	10.0	0.13	16.35	0.02	2.502	1.87	5.96	23.5	71.6	4.9	-4.36	0.19	0.00	0.38	20.0	0.003	0.83	0.0	0.05	16.42	0.01	1.910	10.57	1.94	19.2	80.4	0.4	-3.72	2.32	0.22	0.15	0.07	11700	765	1	0	0	0	5689	logfile
✔	7VZ3	32219	2024-07-22	2021-11-15	2.46	2.36	2.43	19.0	0.009	1.08	2.0	0.07	12.80	0.01	2.203	4.37	0.26	5.4	94.5	0.1	-1.44	0.12	0.02	0.32	2.2	0.005	0.92	1.0	0.05	14.33	0.01	1.998	15.23	1.79	6.2	93.7	0.1	-1.36	1.71	0.22	0.15	0.55	17415	2256	3	0	0	0	0	logfile
✔	5MSH	3565	2024-07-18	2017-01-04	4.25	3.96	—	20.0	0.014	1.56	0.0	0.07	9.56	0.01	2.323	3.07	0.00	6.1	92.5	1.5	-0.93	0.01	0.02	—	3.8	0.003	0.78	0.0	0.05	13.12	0.01	2.193	15.96	0.00	7.5	92.5	0.0	-1.32	1.97	0.04	0.15	—	4287	551	2	0	0	0	0	logfile
✔	6Z5U	11082	2024-07-22	2020-05-27	3.9	4.52	—	38.0	0.021	1.88	10.0	0.11	12.69	0.01	0.901	4.89	1.69	2.0	97.7	0.3	-0.47	0.18	0.03	-0.06	4.5	0.003	0.71	0.0	0.04	14.62	0.00	2.015	12.46	1.89	4.4	95.6	0.0	0.35	1.59	0.29	0.16	0.58	17880	2334	14	0	4	0	0	logfile
✔	8GWB	34308	2024-07-23	2022-09-16	2.75	2.95	2.85	25.0	0.009	1.07	1.0	0.05	17.30	0.01	1.556	16.84	2.25	7.5	92.3	0.2	-2.40	0.29	0.01	0.23	25.0	0.004	0.81	0.0	0.04	17.94	0.01	1.944	21.96	3.71	9.2	90.7	0.1	-1.82	1.62	0.36	0.18	0.12	21879	2655	16	54	10	7	0	logfile
✔	6Qi8	4552	2024-07-21	2019-01-18	3.75	3.92	—	10.4	0.004	0.91	0.0	0.05	16.35	0.01	1.999	4.27	0.19	5.5	94.5	0.0	-5.84	0.17	0.02	0.43	9.9	0.003	0.79	0.0	0.04	17.52	0.00	2.159	12.66	1.90	6.1	93.9	0.0	-1.65	1.43	0.30	0.19	0.23	14789	1907	12	0	6	0	0	logfile
✔	5VZL	8749	2024-07-21	2017-05-29	3.9	4.38	—	19.0	0.006	0.96	0.0	0.05	17.27	0.01	2.216	7.72	0.25	8.4	91.6	0.0	-4.13	0.31	0.03	-0.03	17.0	0.003	0.69	1.0	0.04	18.37	0.00	1.287	12.78	1.58	6.2	93.8	0.0	-0.87	1.78	0.38	0.19	0.90	13915	1451	3	115	1	0	0	logfile
✔	6GYL	0091	2024-07-28	2018-06-30	4.8	4.06	4.25	12.0	0.008	0.47	0.0	0.04	11.78	0.00	0.860	9.27	0.16	6.2	92.8	1.0	-3.33	0.32	0.00	—	3.5	0.003	0.80	0.0	0.05	14.75	0.01	2.093	18.95	0.00	5.4	94.4	0.3	-1.55	1.31	0.51	0.19	—	43409	5250	30	112	11	0	0	logfile

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