Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8DXR	27774	2024-07-20	2022-08-02	4.0	4.31	4.01	4.2	0.004	0.81	0.0	0.04	5.27	0.00	2.255	1.54	0.00	11.6	88.3	0.1	-0.80	0.67	0.71	—	4.2	0.002	0.51	0.0	0.04	3.77	0.00	2.420	0.60	0.00	8.3	91.6	0.1	1.47	0.34	0.67	0.71	—	10435	2101	7	0	0	0	0	logfile
✔	8RTD	19488	2024-07-27	2024-01-25	4.33	7.17	4.43	4.3	0.007	1.13	1.0	0.05	5.17	0.01	1.418	1.51	0.00	5.3	94.7	0.1	-0.16	0.45	0.53	—	4.3	0.002	0.60	0.0	0.04	3.89	0.00	2.169	4.90	0.00	3.9	96.1	0.0	2.19	2.62	0.61	0.74	—	40078	8254	34	0	0	0	0	logfile
✔	8FKJ	29250	2024-07-24	2022-12-21	4.2	4.36	4.26	4.0	0.003	0.66	0.0	0.04	5.09	0.00	2.167	6.77	0.00	9.9	89.9	0.1	-0.50	0.66	0.65	—	4.0	0.002	0.52	0.0	0.04	4.07	0.00	2.191	3.93	0.00	8.9	91.0	0.1	0.18	0.40	0.66	0.67	—	25001	5088	27	0	0	0	0	logfile
✔	6U68	20662	2024-07-20	2019-08-29	4.5	4.54	—	4.5	0.006	0.90	0.0	0.06	4.27	0.00	2.419	0.52	0.00	2.6	97.3	0.1	-3.82	0.71	0.71	—	4.5	0.003	0.71	0.0	0.05	4.13	0.00	2.325	3.21	0.00	6.1	93.9	0.0	-0.04	1.78	0.77	0.81	—	10489	2133	8	0	0	0	0	logfile
✔	8Q7E	18214	2024-07-25	2023-08-16	4.4	6.88	4.07	3.4	0.003	0.49	0.0	0.04	4.57	0.00	2.245	1.35	0.00	0.6	99.4	0.0	0.43	0.64	0.62	—	3.4	0.004	0.60	0.0	0.04	4.22	0.00	2.149	4.82	0.00	7.0	93.0	0.0	1.10	0.89	0.76	0.80	—	29815	6016	12	0	0	0	0	logfile
✔	6VQi	21351	2024-07-19	2020-02-05	4.3	4.89	—	4.2	0.005	1.14	0.0	0.05	3.90	0.01	2.327	1.95	0.00	1.3	98.2	0.5	2.16	0.56	0.73	—	3.8	0.003	0.58	0.0	0.04	4.43	0.00	2.212	4.17	0.00	6.5	93.4	0.1	1.98	0.77	0.56	0.74	—	5278	1062	8	0	0	0	0	logfile
✔	6SH4	10193	2024-07-21	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.69	0.0	0.04	4.47	0.00	2.243	1.49	0.00	7.0	92.8	0.2	0.09	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	8FTK	29439	2024-07-19	2023-01-12	4.56	5.56	4.86	4.4	0.002	0.58	0.0	0.04	4.66	0.00	2.125	4.21	0.00	5.9	94.1	0.0	0.74	0.85	0.81	—	4.4	0.003	0.55	0.0	0.04	4.49	0.00	2.164	4.30	0.00	8.2	91.8	0.0	0.76	1.24	0.86	0.82	—	7840	1584	1	0	0	0	0	logfile
✔	8CGL	16647	2024-07-24	2023-02-05	4.1	6.82	4.33	4.1	0.008	1.07	4.0	0.07	5.62	0.01	2.267	9.85	4.00	7.0	92.8	0.2	-0.82	0.83	0.66	—	4.2	0.004	0.69	0.0	0.05	4.51	0.00	2.176	8.72	0.00	8.4	91.6	0.0	-0.02	1.39	0.90	0.82	—	16732	2212	4	0	0	0	5572	logfile
✔	8iQF	35660	2024-07-21	2023-03-16	4.6	4.96	4.72	4.5	0.003	0.63	0.0	0.00	4.93	0.00	1.995	4.78	0.00	4.2	95.8	0.0	-0.27	0.79	0.61	—	4.5	0.003	0.79	0.0	0.00	4.63	0.00	2.244	5.74	0.00	10.3	89.7	0.0	-2.39	3.18	0.85	0.79	—	9072	2268	10	0	0	0	0	logfile
✔	8oSH	17153	2024-07-19	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.65	0.0	0.04	4.66	0.00	2.198	8.69	0.00	15.2	84.8	0.0	-0.88	0.53	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	7DZW	30915	2024-07-21	2021-01-26	3.45	4.19	3.55	3.3	0.019	2.27	0.0	0.00	4.81	0.01	2.240	2.28	0.00	5.1	93.3	1.6	-1.27	0.44	0.25	—	3.3	0.003	0.81	0.0	0.00	4.68	0.00	2.178	3.51	0.00	11.9	88.0	0.1	-2.05	1.99	0.77	0.73	—	13452	3363	3	0	0	0	0	logfile
✔	7WZR	32912	2024-07-24	2022-02-19	4.7	4.70	—	4.4	0.008	1.21	3.0	0.06	7.95	0.01	2.197	7.80	0.00	21.6	77.2	1.2	-4.58	0.76	0.65	—	4.4	0.002	0.67	0.0	0.04	4.72	0.00	2.151	1.89	0.00	11.3	88.4	0.3	-0.14	1.59	0.76	0.69	—	27037	5440	4	0	0	0	0	logfile
✔	7N9Y	24264	2024-07-19	2021-06-18	4.8	4.30	—	2.2	0.019	1.07	0.0	0.00	6.04	0.00	2.538	0.59	0.00	8.5	91.1	0.3	-1.98	0.49	0.33	—	2.2	0.003	1.01	0.0	0.00	4.81	0.00	2.550	7.73	0.00	18.2	81.3	0.5	-4.24	2.61	0.52	0.31	—	7515	2505	2	0	0	0	0	logfile
✔	8G6K	29772	2024-07-20	2023-02-15	3.6	3.71	3.52	3.4	0.002	0.48	0.0	0.04	4.19	0.00	2.523	0.20	0.00	2.7	97.3	0.0	1.65	0.54	0.71	—	3.5	0.004	0.68	0.0	0.04	4.83	0.00	2.269	4.05	0.00	8.2	91.8	0.0	-0.23	1.47	0.54	0.74	—	9388	1379	7	0	0	0	2576	logfile
✔	7TJY	25946	2024-07-22	2022-01-17	3.8	4.84	3.78	3.6	0.020	2.29	0.0	0.00	6.75	0.01	2.333	0.12	0.00	4.3	94.3	1.5	-0.54	0.59	0.68	—	3.6	0.004	0.79	0.0	0.00	4.84	0.00	2.161	3.93	0.00	9.8	90.0	0.3	0.68	1.48	0.82	0.86	—	20228	5056	27	0	0	0	0	logfile
✔	8PS8	17846	2024-07-22	2023-07-26	4.0	3.56	3.98	3.2	0.016	2.11	0.0	0.08	6.12	0.01	2.328	1.40	0.00	6.7	93.1	0.2	-2.93	0.69	0.76	—	3.2	0.003	0.66	0.0	0.04	4.91	0.00	2.163	3.68	0.00	5.8	94.2	0.0	-0.68	0.68	0.67	0.78	—	18674	3788	3	0	0	0	0	logfile
✔	6VAB	21135	2024-07-18	2019-12-17	4.9	6.51	—	6.8	0.005	0.91	0.0	0.06	8.70	0.01	2.264	14.98	0.00	6.8	93.2	0.0	-3.84	0.71	0.69	—	6.6	0.004	0.69	0.0	0.04	4.96	0.00	2.132	7.42	0.00	8.6	91.4	0.0	-0.31	2.71	0.73	0.69	—	4642	938	4	0	0	0	0	logfile
✔	7N95	24250	2024-07-19	2021-06-16	4.1	3.45	—	2.1	0.002	0.74	0.0	0.00	5.05	0.00	2.573	0.10	0.00	7.1	92.3	0.6	-1.14	0.78	0.70	—	2.1	0.004	1.01	0.0	0.00	4.97	0.00	2.503	6.53	0.00	18.1	81.7	0.2	-3.27	1.81	0.85	0.83	—	7299	2433	2	0	0	0	0	logfile
✔	7N9Q	24259	2024-07-19	2021-06-18	4.6	4.92	—	2.3	0.002	0.88	0.0	0.00	5.65	0.00	2.600	0.00	0.00	8.9	90.3	0.8	-1.59	0.79	0.69	—	2.5	0.003	1.00	0.0	0.00	5.05	0.00	2.580	6.76	0.00	12.3	86.7	0.9	-4.51	2.40	0.85	0.81	—	6945	2315	1	0	0	0	0	logfile

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