Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZP5	11336	2024-07-23	2020-07-08	3.1	3.90	3.32	3.6	0.013	0.92	0.0	0.15	16.89	0.00	0.012	14.22	0.52	3.0	97.0	0.0	-0.93	0.67	0.64	2.54	3.6	0.005	0.78	0.0	0.11	14.58	0.00	0.790	10.44	1.95	4.1	95.9	0.0	0.18	0.68	0.83	0.85	2.14	23615	2861	33	0	92	0	0	logfile
✔	6ZP7	11337	2024-07-23	2020-07-08	3.3	4.01	3.43	3.7	0.013	0.92	0.0	0.17	16.89	0.00	0.008	16.12	0.52	3.0	97.0	0.0	-0.92	0.64	0.59	1.49	3.7	0.003	0.76	0.0	0.11	14.70	0.00	0.794	10.08	2.15	3.4	96.6	0.0	0.14	1.34	0.81	0.84	2.03	23615	2861	33	0	92	0	0	logfile
✔	8oo7	17006	2024-07-27	2023-04-04	2.8	1.96	—	2.8	0.004	0.95	0.0	0.05	18.24	0.01	1.779	3.33	0.00	2.3	97.7	0.0	-1.13	0.82	0.81	3.75	2.8	0.004	0.70	0.0	0.04	20.41	0.00	0.923	8.37	1.88	2.1	97.9	0.0	0.96	1.37	0.84	0.83	2.73	41024	4693	26	226	11	0	0	logfile
✔	7T76	25735	2024-07-22	2021-12-14	4.43	4.68	4.39	4.5	0.022	1.97	2.0	0.14	12.89	0.02	0.530	1.29	0.77	3.4	96.4	0.3	0.31	0.81	0.80	—	4.5	0.003	0.74	0.0	0.05	12.25	0.00	0.959	12.88	0.00	5.2	94.7	0.1	-0.85	1.89	0.81	0.82	—	16587	1934	42	0	104	0	0	logfile
✔	8oo9	17007	2024-07-18	2023-04-04	3.2	2.32	3.17	3.1	0.010	1.70	0.0	0.06	20.61	0.01	1.879	4.84	0.00	2.3	97.7	0.0	-2.21	0.81	0.78	3.72	3.1	0.004	1.04	0.0	0.04	21.99	0.00	0.966	10.15	1.26	2.3	97.7	0.0	-0.57	1.37	0.83	0.81	2.58	4516	439	4	42	3	0	0	logfile
✔	7UiM	26549	2024-07-21	2022-03-29	3.1	4.12	3.81	3.6	0.005	0.87	0.0	0.04	24.93	0.01	1.903	9.02	0.00	3.7	96.3	0.0	-1.28	0.67	0.47	0.98	3.6	0.005	0.75	0.0	0.04	25.37	0.01	1.013	32.05	4.99	6.0	93.7	0.3	-0.55	2.98	0.80	0.77	0.71	14772	387	3	541	15	0	0	logfile
✔	8GJ1	40082	2024-07-28	2023-03-14	3.0	3.88	3.12	3.5	0.003	1.20	0.0	0.04	13.99	0.00	2.011	2.38	2.45	2.0	97.8	0.2	3.07	0.83	0.85	2.72	3.5	0.003	0.90	0.0	0.04	15.47	0.00	1.020	6.58	1.79	3.7	96.2	0.2	2.43	1.44	0.84	0.86	2.43	41535	2539	14	52	13	0	20553	logfile
✔	7U0i	26260	2024-07-22	2022-02-18	2.6	3.16	—	3.0	0.012	0.86	10.0	0.05	26.82	0.01	2.074	14.30	1.56	3.9	96.0	0.1	0.00	0.85	0.87	3.19	2.9	0.008	0.69	1.0	0.03	27.23	0.01	1.027	22.17	3.20	5.1	94.9	0.0	1.34	0.33	0.81	0.86	3.40	18108	1368	14	298	0	0	1220	logfile
✔	8oiF	16891	2024-07-19	2023-03-22	3.5	3.41	3.30	3.4	0.003	0.59	0.0	0.04	13.83	0.01	2.246	6.05	0.00	6.8	93.2	0.0	-0.42	0.75	0.81	3.19	3.3	0.003	0.58	0.0	0.04	14.27	0.00	1.028	6.29	2.32	6.0	94.0	0.0	-0.04	0.84	0.75	0.81	2.75	6589	934	4	0	1	0	0	logfile
✔	7To3	26028	2024-07-21	2022-01-22	2.74	3.49	2.83	3.3	0.002	0.54	0.0	0.04	12.12	0.00	2.062	3.20	0.00	1.9	98.1	0.0	0.85	0.83	0.85	3.77	3.3	0.003	0.60	0.0	0.04	13.98	0.00	1.060	3.71	1.29	2.1	97.9	0.0	1.08	1.32	0.82	0.85	3.59	14764	1850	6	0	10	0	0	logfile
✔	6NJo	9390	2024-07-22	2019-01-03	3.34	3.42	—	3.4	0.010	1.20	1.0	0.07	11.62	0.01	1.361	5.89	0.49	7.1	92.9	0.0	-4.27	0.80	0.83	3.46	3.4	0.004	0.73	0.0	0.05	14.72	0.00	1.067	9.80	2.99	6.3	93.7	0.0	-1.45	1.12	0.83	0.85	2.28	19090	2466	14	0	12	20	0	logfile
✔	7o5H	12736	2024-07-26	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	21.63	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	22.33	0.01	1.076	13.62	3.21	3.9	96.1	0.0	0.32	1.48	0.87	0.85	1.45	34436	1730	22	964	167	0	0	logfile
✔	6VQT	21356	2024-07-20	2020-02-05	3.03	4.54	3.09	4.1	0.009	1.15	0.0	0.06	16.32	0.01	1.733	10.32	4.94	2.7	97.3	0.0	1.39	0.78	0.80	1.43	4.1	0.004	0.72	0.0	0.04	16.75	0.00	1.082	9.39	3.97	3.3	96.7	0.0	2.67	1.05	0.77	0.84	1.18	9144	1168	4	0	6	0	0	logfile
✔	8TJV	41312	2024-07-20	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.53	0.01	1.086	12.37	0.00	0.0	0.0	0.0	—	0.88	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	7TQD	26066	2024-07-19	2022-01-26	2.9	3.57	2.94	3.4	0.003	0.52	0.0	0.04	12.10	0.00	1.960	3.21	0.00	2.0	98.0	0.0	0.95	0.80	0.82	3.99	3.4	0.003	0.58	0.0	0.04	14.87	0.00	1.099	5.13	1.87	2.6	97.4	0.0	1.18	2.47	0.81	0.84	3.90	8690	1096	4	0	5	0	0	logfile
✔	9B4H	43892	2024-07-26	2024-03-20	3.1	3.91	—	3.5	0.020	1.03	1.0	0.09	15.89	0.00	1.517	11.08	3.29	3.3	96.7	0.0	-0.08	0.49	0.88	2.54	3.5	0.004	0.63	0.0	0.05	12.50	0.00	1.118	9.62	4.39	4.3	95.7	0.0	-0.12	0.27	0.48	0.87	2.61	32328	3925	110	0	380	0	0	logfile
✔	7RPW	24624	2024-07-20	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.29	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.003	0.68	0.0	0.04	18.70	0.00	1.118	17.19	0.00	9.6	90.4	0.1	-2.93	3.76	0.77	0.67	—	10594	1179	10	62	5	0	0	logfile
✔	8SRH	40731	2024-07-27	2023-05-05	3.79	3.48	—	3.4	0.009	1.30	4.0	0.07	14.18	0.01	2.198	3.19	0.36	4.4	95.6	0.0	-4.98	0.72	0.72	1.94	3.4	0.003	0.65	0.0	0.04	14.46	0.00	1.119	6.95	1.48	3.4	96.6	0.0	0.79	0.68	0.76	0.80	2.10	39468	5464	8	0	36	0	0	logfile
✔	6ZoL	11322	2024-07-24	2020-07-07	2.8	3.00	2.78	2.9	0.003	0.55	0.0	0.04	20.59	0.00	1.309	4.02	1.49	3.0	97.0	0.0	0.69	0.75	0.87	3.29	3.0	0.003	0.57	0.0	0.04	21.50	0.00	1.131	4.98	2.87	3.0	97.0	0.0	0.71	2.44	0.75	0.88	2.87	25591	1944	22	472	59	0	0	logfile
✔	8G27	29678	2024-07-26	2023-02-03	3.3	3.75	3.55	3.7	0.003	0.59	7.0	0.07	16.76	0.00	1.501	5.09	0.05	5.2	94.6	0.2	0.80	0.68	0.83	1.69	3.7	0.003	0.61	8.0	0.07	15.30	0.00	1.141	4.80	0.97	5.6	94.2	0.2	0.81	1.02	0.70	0.86	1.72	34406	2157	12	3	21	2	16885	logfile

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