Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8K0R	36778	2024-07-23	2023-07-10	2.65	2.96	2.86	2.8	0.010	1.30	0.0	0.07	25.03	0.01	1.812	14.80	0.00	0.0	0.0	0.0	—	0.65	0.67	—	2.7	0.006	0.91	0.0	0.05	25.89	0.01	1.731	19.89	0.00	0.0	0.0	0.0	—	0.91	0.69	0.74	—	23506	0	6	1096	2	0	0	logfile
✔	8K0P	36776	2024-07-23	2023-07-10	2.99	3.19	3.07	3.1	0.008	0.99	0.0	0.06	24.97	0.01	1.792	8.78	0.00	0.0	0.0	0.0	—	0.73	0.80	—	3.1	0.005	0.73	0.0	0.04	24.78	0.01	1.840	9.92	0.00	0.0	0.0	0.0	—	0.61	0.75	0.84	—	23274	0	4	1084	4	0	0	logfile
✔	8K15	36786	2024-07-20	2023-07-10	2.58	2.79	2.58	2.9	0.009	1.04	0.0	0.06	25.09	0.01	1.850	4.02	0.00	0.0	0.0	0.0	—	0.70	0.81	—	2.8	0.006	0.78	0.0	0.04	24.77	0.01	1.771	5.93	0.00	0.0	0.0	0.0	—	0.27	0.68	0.81	—	10093	0	2	470	2	0	0	logfile
✔	8TJQ	41308	2024-07-20	2023-07-24	3.4	4.09	3.45	3.4	0.005	0.63	0.0	0.03	24.84	0.00	1.883	19.77	0.00	0.0	0.0	0.0	—	0.90	0.85	—	3.4	0.008	0.76	0.0	0.04	24.61	0.01	1.817	25.57	0.00	0.0	0.0	0.0	—	0.19	0.92	0.90	—	9296	0	2	433	28	0	0	logfile
✔	8K0S	36779	2024-07-23	2023-07-10	3.41	3.87	3.74	3.4	0.008	1.01	0.0	0.06	25.18	0.01	1.792	8.76	0.00	0.0	0.0	0.0	—	0.76	0.69	—	3.4	0.006	0.72	0.0	0.04	25.56	0.01	1.796	19.64	0.00	0.0	0.0	0.0	—	1.92	0.85	0.88	—	23312	0	4	1086	2	0	0	logfile
✔	8UPT	42455	2024-07-18	2023-10-23	2.8	3.38	2.84	2.9	0.016	2.20	0.0	0.16	30.45	0.01	1.072	99.56	0.00	0.0	0.0	0.0	—	0.23	0.59	—	2.9	0.005	0.73	0.0	0.04	27.91	0.01	2.113	22.27	0.00	0.0	0.0	0.0	—	0.95	0.28	0.87	—	1518	0	1	71	0	0	0	logfile
✔	8TJV	41312	2024-07-20	2023-07-24	2.99	3.53	2.99	3.1	0.006	0.61	0.0	0.04	24.19	0.00	1.526	10.47	0.00	0.0	0.0	0.0	—	0.91	0.89	—	3.1	0.008	0.70	0.0	0.04	23.53	0.01	1.086	12.37	0.00	0.0	0.0	0.0	—	0.88	0.92	0.92	—	8778	0	2	409	32	0	0	logfile
✔	6PoM	20416	2024-07-19	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	5.0	0.010	1.23	0.0	0.06	27.09	0.01	1.945	59.78	0.00	0.0	0.0	0.0	—	1.74	0.74	0.79	—	4937	0	2	230	0	0	0	logfile
✔	7YC8	33736	2024-07-19	2022-07-01	4.14	7.25	4.31	4.1	0.002	0.51	0.0	0.02	25.12	0.00	2.079	18.05	0.00	0.0	0.0	0.0	—	0.96	0.87	—	4.1	0.006	0.81	0.0	0.04	27.57	0.01	1.977	68.78	0.00	0.0	0.0	0.0	—	1.24	0.97	0.89	—	8335	0	2	388	1	0	0	logfile
✔	7URM	26714	2024-07-18	2022-04-22	3.0	3.11	3.56	2.9	0.009	1.41	0.0	0.11	28.63	0.01	2.440	0.70	0.00	0.0	0.0	0.0	—	0.14	0.53	—	3.0	0.007	1.15	0.0	0.05	27.88	0.01	2.001	29.60	0.00	0.0	0.0	0.0	—	1.67	0.15	0.53	—	1905	0	1	90	0	0	0	logfile
✔	7SAM	24952	2024-07-19	2021-09-22	4.3	6.95	4.38	4.2	0.001	0.39	0.0	0.02	23.50	0.00	1.952	2.96	0.00	0.0	0.0	0.0	—	0.84	0.51	—	4.3	0.006	0.88	0.0	0.04	28.37	0.01	1.818	83.35	0.00	0.0	0.0	0.0	—	5.72	0.95	0.87	—	5399	0	1	169	0	0	1802	logfile
✔	6oEH	20020	2024-07-26	2019-03-27	3.8	3.93	—	3.7	0.010	1.38	0.0	0.07	11.62	0.01	2.381	2.81	0.00	0.0	0.0	0.0	—	0.38	0.77	—	3.7	0.007	1.05	0.0	0.04	5.09	0.00	2.203	12.28	0.00	0.0	0.0	0.0	—	0.52	0.40	0.80	—	32900	0	14	0	6580	0	0	logfile
✔	6o1o	0454	2024-07-21	2019-02-21	3.8	4.00	—	3.6	0.008	1.55	0.0	0.07	18.29	0.01	2.295	4.58	0.00	0.0	0.0	0.0	—	0.72	0.70	—	3.6	0.012	1.72	0.0	0.07	17.09	0.00	1.997	30.54	0.00	0.0	0.0	0.0	—	1.70	0.78	0.76	—	15193	0	14	66	2757	0	0	logfile
✔	6X64	22069	2024-07-21	2020-05-27	3.7	4.01	—	3.7	0.008	1.34	0.0	0.05	9.32	0.01	2.584	0.78	0.00	0.0	0.0	0.0	—	0.68	0.84	—	3.7	0.009	1.23	0.0	0.05	5.42	0.00	2.111	10.35	0.00	0.0	0.0	0.0	—	2.35	0.69	0.86	—	15840	0	36	0	3168	0	0	logfile
✔	8TJX	41313	2024-07-19	2023-07-24	2.44	3.10	2.65	2.9	0.006	0.64	0.0	0.04	24.81	0.01	1.872	12.24	0.00	0.0	0.0	0.0	—	0.85	0.85	—	2.9	0.007	0.61	0.0	0.04	24.05	0.01	1.838	11.39	0.00	0.0	0.0	0.0	—	0.81	0.84	0.86	—	7839	0	2	365	27	0	0	logfile
✔	8TJU	41311	2024-07-20	2023-07-24	3.46	4.75	3.48	3.4	0.006	0.67	0.0	0.04	25.59	0.01	1.874	27.33	0.00	0.0	0.0	0.0	—	0.93	0.86	—	3.4	0.008	0.70	0.0	0.04	24.91	0.01	1.784	28.62	0.00	0.0	0.0	0.0	—	0.32	0.94	0.91	—	8771	0	2	409	27	0	0	logfile
✔	7UR5	26705	2024-07-19	2022-04-21	2.6	2.89	2.82	2.9	0.008	1.48	0.0	0.11	29.59	0.01	2.204	2.44	0.00	0.0	0.0	0.0	—	0.05	0.58	—	2.9	0.005	0.89	0.0	0.05	27.26	0.01	2.007	16.72	0.00	0.0	0.0	0.0	—	1.85	0.08	0.67	—	5709	0	3	270	0	0	0	logfile
✔	7URi	26713	2024-07-18	2022-04-22	2.6	2.67	2.95	2.6	0.009	1.37	0.0	0.12	30.06	0.01	2.201	7.31	0.00	0.0	0.0	0.0	—	0.05	0.34	—	2.6	0.007	1.42	0.0	0.07	28.72	0.01	2.070	25.42	0.00	0.0	0.0	0.0	—	2.08	0.08	0.38	—	1905	0	1	90	0	0	0	logfile
✔	6oDJ	20021	2024-07-24	2019-03-26	3.5	3.75	—	3.7	0.009	1.50	0.0	0.07	11.32	0.01	2.438	2.03	0.00	0.0	0.0	0.0	—	0.81	0.81	—	3.7	0.012	1.73	0.0	0.06	7.96	0.00	2.090	10.56	0.00	0.0	0.0	0.0	—	0.60	0.82	0.83	—	25415	0	17	0	5083	0	0	logfile
✔	8K0Q	36777	2024-07-23	2023-07-10	3.14	3.28	3.12	3.2	0.008	1.01	0.0	0.06	25.11	0.01	1.792	9.81	0.00	0.0	0.0	0.0	—	0.72	0.73	—	3.2	0.006	0.70	0.0	0.04	24.61	0.01	1.732	12.74	0.00	0.0	0.0	0.0	—	0.81	0.74	0.75	—	23586	0	6	1100	4	0	0	logfile

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