Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TPi	26056	2024-07-23	2022-01-25	2.3	2.38	—	2.3	0.013	1.55	12.0	0.10	10.36	0.01	2.100	2.28	0.49	2.1	97.9	0.0	0.35	0.75	0.78	5.09	2.3	0.003	0.61	0.0	0.05	12.90	0.00	2.206	2.93	1.15	1.3	98.7	0.0	0.86	1.11	0.72	0.74	4.78	21168	2862	12	0	54	0	0	logfile
✔	8SDZ	40355	2024-07-18	2023-04-07	2.86	3.25	2.87	3.2	0.003	0.59	0.0	0.04	16.55	0.00	2.135	4.33	1.43	0.8	99.2	0.0	0.91	0.56	0.82	2.83	3.2	0.002	0.53	0.0	0.04	16.31	0.00	2.111	5.48	2.86	1.6	98.4	0.0	2.11	0.45	0.57	0.83	2.49	3913	500	2	0	1	22	0	logfile
✔	7YoX	33989	2024-07-21	2022-08-02	3.95	4.33	4.09	4.1	0.006	1.31	8.0	0.10	27.06	0.01	0.786	33.58	46.70	1.0	98.8	0.2	2.84	0.82	0.70	0.48	4.1	0.005	0.98	1.0	0.05	19.34	0.00	1.843	28.27	7.91	3.3	96.7	0.0	0.08	1.36	0.85	0.78	0.49	13878	1749	6	0	0	0	0	logfile
✔	8GPi	34193	2024-07-22	2022-08-26	3.0	2.28	2.93	2.1	0.005	0.76	0.0	0.05	14.80	0.00	2.188	5.16	0.00	2.2	97.8	0.0	0.49	0.78	0.78	3.49	2.1	0.003	0.58	0.0	0.04	14.01	0.00	2.189	5.39	1.94	2.3	97.7	0.0	0.88	1.12	0.79	0.81	3.09	20265	2364	50	0	132	0	0	logfile
✔	8iQ4	35657	2024-07-19	2023-03-15	2.7	3.02	2.81	3.1	0.003	0.60	0.0	0.04	14.91	0.00	2.218	5.45	0.58	4.0	96.0	0.0	1.43	0.69	0.83	4.47	3.1	0.003	0.51	0.0	0.04	15.36	0.00	2.153	6.25	2.61	4.3	95.7	0.0	1.44	0.16	0.68	0.83	4.59	7080	954	6	0	1	0	0	logfile
✔	8T15	40955	2024-07-24	2023-06-01	2.7	2.92	2.77	2.9	0.002	0.53	0.0	0.04	16.28	0.00	2.440	0.55	0.00	1.5	98.5	0.0	1.81	0.63	0.80	6.01	2.9	0.003	0.51	0.0	0.04	17.30	0.00	2.031	1.79	1.28	1.9	98.1	0.0	1.52	0.78	0.61	0.82	5.29	25656	1608	12	0	0	0	12612	logfile
✔	8ATV	15664	2024-07-20	2022-08-24	3.39	2.97	3.38	3.2	0.004	0.70	0.0	0.05	18.01	0.00	2.173	6.99	0.00	3.4	96.6	0.0	1.00	0.62	0.77	2.42	3.2	0.003	0.54	0.0	0.04	18.79	0.00	2.171	7.92	0.66	3.0	97.0	0.0	1.28	1.02	0.62	0.79	2.12	11161	1257	6	58	1	0	0	logfile
✔	8JiQ	36324	2024-07-19	2023-05-27	3.4	3.86	3.37	3.7	0.003	0.64	0.0	0.04	15.17	0.00	2.202	10.10	2.47	4.1	95.5	0.4	-0.03	0.82	0.80	2.08	3.7	0.003	0.59	0.0	0.04	16.03	0.00	2.116	10.69	1.23	3.5	96.5	0.0	0.56	0.41	0.82	0.83	1.72	8707	1134	6	0	0	0	0	logfile
✔	8SNY	40642	2024-07-21	2023-04-28	3.41	3.37	3.52	3.4	0.004	0.62	1.0	0.04	15.35	0.00	1.932	13.38	0.33	3.5	96.5	0.0	0.92	0.71	0.81	2.02	3.4	0.003	0.61	1.0	0.04	17.30	0.00	2.173	14.21	2.99	3.4	96.6	0.0	0.85	0.36	0.72	0.84	1.77	13744	1680	6	8	0	0	0	logfile
✔	8oLN	16959	2024-07-18	2023-03-30	3.3	3.38	2.68	3.7	0.002	0.48	0.0	0.04	9.04	0.00	2.271	10.63	2.41	8.2	91.8	0.0	-4.24	0.41	0.82	4.41	3.6	0.006	0.66	0.0	0.05	17.29	0.00	2.200	17.48	10.69	7.1	92.9	0.0	-4.45	2.86	0.40	0.82	4.46	2830	360	10	0	0	0	0	logfile
✔	8S51	19718	2024-07-28	2024-02-22	3.1	3.72	3.09	3.7	0.008	0.87	1.0	0.08	16.32	0.01	1.887	4.22	0.17	3.5	96.4	0.0	-2.17	0.71	0.77	1.89	3.7	0.004	0.67	1.0	0.04	17.91	0.00	1.956	10.04	1.33	3.4	96.5	0.0	0.46	0.40	0.54	0.69	1.57	44796	5272	31	124	11	0	0	logfile
✔	8PSG	17852	2024-07-25	2023-07-13	3.7	3.67	3.55	3.3	0.014	1.89	0.0	0.09	14.86	0.01	2.169	5.38	0.65	7.3	92.4	0.3	-3.71	0.73	0.84	2.35	3.3	0.002	0.60	0.0	0.04	15.83	0.00	2.134	10.40	0.89	3.0	97.0	0.0	0.52	1.14	0.73	0.82	2.01	29610	3777	4	0	1	0	0	logfile
✔	7ZoX	14849	2024-07-19	2022-04-26	4.4	3.95	4.37	3.8	0.005	0.72	0.0	0.04	15.62	0.00	2.219	17.13	0.14	7.7	92.3	0.0	-4.40	0.84	0.80	—	3.8	0.003	0.66	0.0	0.04	15.03	0.00	2.234	14.24	0.00	4.8	95.2	0.0	-0.57	0.72	0.84	0.78	—	6772	852	3	0	0	0	0	logfile
✔	8GCP	29940	2024-07-19	2023-03-02	3.1	2.18	3.10	2.0	0.011	1.26	2.0	0.08	13.82	0.01	2.242	7.74	0.67	7.8	92.2	0.0	-2.39	0.75	0.75	3.12	2.0	0.002	0.58	0.0	0.04	15.40	0.00	2.115	5.55	2.56	3.3	96.7	0.0	0.26	0.96	0.76	0.77	2.52	7921	1108	6	0	1	0	0	logfile
✔	8F35	28832	2024-07-20	2022-11-09	3.17	2.86	3.36	3.0	0.005	0.75	0.0	0.05	14.23	0.01	2.235	9.63	0.00	8.9	91.1	0.0	-1.03	0.60	0.79	2.87	3.0	0.004	0.58	0.0	0.05	15.87	0.00	2.178	9.99	1.53	6.0	94.0	0.0	0.18	0.85	0.61	0.84	3.80	12525	1535	5	0	0	0	0	logfile
✔	8D2Q	27146	2024-07-20	2022-05-30	2.58	2.06	2.50	2.5	0.006	0.97	1.0	0.05	20.82	0.01	2.113	5.23	0.00	3.5	96.5	0.0	-1.68	0.60	0.79	4.32	2.5	0.004	0.61	0.0	0.04	21.18	0.00	2.002	10.03	1.35	3.0	97.0	0.0	0.49	0.37	0.61	0.82	4.18	9721	906	8	122	5	2	0	logfile
✔	8EWG	28645	2024-07-20	2022-10-23	2.9	3.04	2.81	3.0	0.004	0.81	0.0	0.05	22.25	0.01	2.216	5.36	1.43	8.3	91.7	0.0	-0.89	0.80	0.85	1.86	3.0	0.004	0.65	0.0	0.04	21.99	0.00	2.114	7.61	1.98	9.1	90.9	0.0	1.36	0.42	0.78	0.85	1.80	9616	1017	2	56	0	0	0	logfile
✔	8JTA	36638	2024-07-18	2023-06-21	3.36	3.64	3.38	3.6	0.013	1.26	0.0	0.07	14.05	0.01	2.320	7.70	2.67	5.5	94.5	0.0	-2.72	0.63	0.85	1.70	3.6	0.004	0.76	0.0	0.04	15.72	0.01	2.293	7.02	4.33	3.9	96.1	0.0	1.16	0.47	0.62	0.87	1.47	2879	386	2	0	1	0	0	logfile
✔	8P4K	17410	2024-07-25	2023-05-22	3.8	3.61	4.17	3.8	0.020	2.62	0.0	0.10	9.97	0.01	2.351	1.00	0.00	1.0	99.0	0.0	0.04	0.30	0.42	1.07	3.6	0.003	1.08	0.0	0.04	13.47	0.00	1.954	16.26	1.08	4.5	95.5	0.0	-0.05	0.82	0.37	0.52	0.93	29211	1797	3	0	0	0	14643	logfile
✔	8W8Q	37356	2024-07-19	2023-09-04	2.89	2.84	2.69	2.9	0.005	0.74	0.0	0.05	15.29	0.00	2.216	10.52	1.71	1.6	98.4	0.0	1.04	0.72	0.85	3.59	2.9	0.003	0.56	0.0	0.04	16.29	0.00	2.227	8.06	3.64	1.8	98.2	0.0	1.32	1.10	0.71	0.86	3.51	8168	1044	5	0	0	0	0	logfile

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