Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7UUQ	26800	2024-07-18	2022-04-28	3.1	3.45	2.98	3.3	0.018	1.82	0.0	0.06	18.29	0.01	1.865	20.35	0.00	0.0	100.0	0.0	-9.31	0.68	0.85	2.95	3.3	0.118	4.50	13.0	0.23	31.72	0.03	1.583	56.84	19.23	66.1	31.0	3.0	-10.80	0.67	0.73	0.90	3.63	4760	364	98	0	98	0	0	logfile
✔	8B3A	15824	2024-07-18	2022-09-16	3.8	3.66	2.91	4.1	0.010	1.90	0.0	0.10	27.06	0.10	2.613	1.89	0.00	0.0	100.0	0.0	-4.71	0.55	0.64	5.18	4.1	0.079	5.86	24.0	0.42	23.14	0.05	1.657	287.44	49.05	50.7	5.3	44.0	-10.74	2.54	0.44	0.59	3.37	2010	210	60	0	60	0	0	logfile
✔	7LQF	23484	2024-07-19	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.28	243.0	0.42	27.19	0.03	1.692	204.33	25.78	61.7	36.3	2.0	-9.51	2.02	0.69	0.87	3.22	5376	512	64	0	0	0	0	logfile
✔	6S8F	10120	2024-07-26	2019-07-09	4.0	4.88	—	3.9	0.007	1.26	0.0	0.06	11.79	0.01	1.859	6.71	0.80	9.6	90.3	0.1	-4.38	0.88	0.77	—	3.9	0.042	2.91	48.0	0.11	19.42	0.02	1.497	185.65	33.05	52.9	44.5	2.6	-7.92	2.40	0.91	0.89	—	33664	3530	4	0	1616	0	0	logfile
✔	8iKB	35508	2024-07-18	2023-02-28	3.71	3.37	3.27	3.6	0.009	4.38	45.0	0.34	11.37	0.00	1.899	43.20	0.00	2.9	97.1	0.0	-5.58	0.28	0.73	2.50	3.6	0.050	3.12	1.0	0.15	19.49	0.01	1.928	112.45	29.46	50.0	42.1	7.9	-7.72	1.63	0.32	0.85	3.87	1764	252	28	0	0	0	0	logfile
✔	8oKR	16930	2024-07-18	2023-03-29	2.86	3.36	2.66	3.4	0.007	1.56	0.0	0.09	22.91	0.01	1.489	4.96	0.00	0.0	100.0	0.0	-4.51	0.55	0.67	7.31	3.4	0.190	6.52	60.0	0.43	29.21	0.04	1.639	169.69	15.48	50.0	38.3	11.7	-7.72	2.21	0.63	0.89	1.62	1608	168	24	0	0	0	0	logfile
✔	8iK7	35505	2024-07-18	2023-02-28	3.69	3.48	3.31	3.6	0.009	3.75	27.0	0.34	10.51	0.00	1.936	29.98	0.00	13.7	86.3	0.0	-5.90	0.27	0.76	3.67	3.6	0.052	2.62	1.0	0.15	20.33	0.02	1.883	92.29	38.33	56.0	39.3	4.8	-7.63	1.63	0.34	0.87	3.53	1488	216	24	0	0	0	0	logfile
✔	7LQE	23483	2024-07-19	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.149	5.03	243.0	0.38	26.33	0.02	1.712	136.61	27.78	32.6	67.4	0.0	-7.49	1.53	0.65	0.90	1.99	6048	576	72	0	0	0	0	logfile
✔	6oDY	20024	2024-07-25	2019-03-27	3.8	3.40	—	3.2	0.010	1.59	18.0	0.11	15.38	0.01	1.264	18.28	3.15	16.6	83.3	0.0	-5.02	0.66	0.62	1.16	3.2	0.030	3.05	8.0	0.14	21.28	0.02	1.723	104.00	28.40	37.4	61.2	1.4	-7.15	0.87	0.69	0.69	1.38	28116	2832	6	0	1326	0	0	logfile
✔	8iZZ	35878	2024-07-18	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.45	2.0	0.14	27.14	0.01	2.033	45.13	22.73	48.5	48.5	3.0	-7.00	3.54	0.30	0.50	-0.67	1342	198	22	0	0	0	0	logfile
✔	8iKS	35520	2024-07-18	2023-03-01	3.75	3.73	3.52	3.2	0.018	4.07	8.0	0.24	18.13	0.00	1.885	50.36	0.00	8.3	91.7	0.0	-5.59	0.34	0.66	1.82	2.9	0.032	2.98	0.0	0.15	23.72	0.01	1.974	104.06	33.33	45.8	52.1	2.1	-6.90	1.67	0.35	0.69	0.93	1024	144	16	0	0	0	0	logfile
✔	8iY7	35816	2024-07-18	2023-04-04	3.71	3.66	3.44	3.6	0.019	4.84	30.0	0.35	18.12	0.00	1.763	38.65	0.00	18.1	81.9	0.0	-5.43	0.30	0.58	2.90	3.5	0.025	3.40	0.0	0.11	26.75	0.01	2.107	54.49	27.08	41.7	51.4	6.9	-6.83	2.46	0.30	0.58	1.33	1464	216	24	0	0	0	0	logfile
✔	7LQG	23485	2024-07-20	2021-02-13	3.4	3.13	—	3.3	0.016	1.42	0.0	0.04	20.72	0.00	1.842	31.02	14.58	0.0	100.0	0.0	-5.94	0.61	0.81	5.57	3.2	0.109	4.27	170.0	0.30	23.94	0.02	1.800	116.62	26.04	18.2	81.8	0.0	-6.81	1.11	0.67	0.87	3.36	12096	1152	144	0	0	0	0	logfile
✔	8iKP	35519	2024-07-18	2023-02-28	2.98	2.59	2.85	3.0	0.013	1.99	2.0	0.05	15.08	0.00	1.973	20.34	0.00	15.6	84.4	0.0	-7.03	0.26	0.65	5.92	3.0	0.041	3.24	2.0	0.13	21.92	0.01	1.944	17.19	10.94	36.2	62.5	1.2	-6.50	2.02	0.32	0.77	3.34	2048	288	32	0	0	0	0	logfile
✔	7LQH	23486	2024-07-20	2021-02-13	3.4	3.12	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.098	31.15	14.58	0.0	100.0	0.0	-5.94	0.59	0.80	5.83	3.2	0.110	4.14	174.0	0.30	24.30	0.02	1.789	113.09	26.16	22.0	78.0	0.0	-6.41	3.62	0.65	0.87	3.24	12096	1152	144	0	0	0	0	logfile
✔	7DWV	30887	2024-07-18	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.258	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.004	0.78	0.0	0.05	17.73	0.00	2.189	18.12	18.65	23.6	76.4	0.0	-6.14	1.49	0.41	0.75	2.77	2064	258	6	0	0	0	0	logfile
✔	7Q3U	13795	2024-07-18	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.005	0.94	0.0	0.05	18.90	0.01	2.184	31.37	2.38	15.9	84.1	0.0	-6.09	2.23	0.34	0.61	3.33	2355	355	5	0	0	0	0	logfile
✔	7M65	23689	2024-07-18	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.003	0.82	0.0	0.04	11.89	0.00	2.270	17.83	0.00	14.5	85.5	0.0	-6.00	4.41	0.51	0.72	—	2025	275	15	0	5	0	0	logfile
✔	7DA4	30622	2024-07-18	2020-10-14	4.24	3.75	—	4.2	0.010	1.54	0.0	0.08	17.16	0.01	2.245	79.80	0.00	50.0	50.0	0.0	-8.65	0.39	0.66	—	4.3	0.004	0.98	0.0	0.04	11.88	0.00	2.201	17.17	0.00	25.0	75.0	0.0	-5.95	3.06	0.36	0.60	—	507	66	3	0	0	0	0	logfile
✔	6ZRF	11380	2024-07-18	2020-07-13	3.6	3.66	1.96	3.6	0.010	1.07	0.0	0.04	13.27	0.00	1.993	42.14	0.00	4.9	95.1	0.0	-6.22	0.67	0.79	1.84	3.7	0.005	0.72	0.0	0.04	15.10	0.00	2.280	20.95	6.67	12.9	87.1	0.0	-5.88	0.50	0.70	0.82	2.85	2220	300	12	0	0	0	0	logfile

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