Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oB4	12794	2024-07-20	2021-04-21	3.22	3.25	—	3.5	0.009	1.03	0.0	0.07	13.89	0.00	2.206	23.16	0.09	3.7	96.3	0.0	-4.30	0.54	0.78	4.06	3.5	0.005	0.74	0.0	0.05	15.14	0.00	2.138	18.69	2.93	6.8	93.2	0.0	-3.87	1.18	0.44	0.75	4.68	10066	1288	14	0	0	0	0	logfile
✔	6WL7	21816	2024-07-26	2020-04-18	3.8	4.18	—	3.9	0.006	0.58	0.0	0.04	14.93	0.00	2.204	8.50	0.00	1.2	98.8	0.0	3.28	0.79	0.87	2.36	3.9	0.005	0.83	0.0	0.04	17.52	0.00	2.175	13.93	6.54	0.0	100.0	0.0	5.90	1.40	0.79	0.87	1.96	34350	4350	150	0	0	0	0	logfile
✔	6LRQ	0958	2024-07-18	2020-01-16	3.49	3.59	—	4.0	0.009	0.85	0.0	0.05	11.88	0.00	2.205	20.30	0.00	14.8	85.2	0.0	-4.51	0.46	0.71	1.87	4.1	0.005	0.75	0.0	0.05	14.43	0.00	2.378	13.04	8.52	12.0	88.0	0.0	-2.85	1.51	0.46	0.71	1.37	2628	378	6	0	0	0	0	logfile
✔	7U12	26275	2024-07-18	2022-02-19	3.5	3.59	—	4.4	0.011	1.06	0.0	0.07	16.72	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.004	0.82	0.0	0.06	15.15	0.00	2.205	11.72	3.94	9.3	90.7	0.0	-3.74	2.89	0.33	0.56	2.09	3456	405	6	0	12	0	0	logfile
✔	7QKH	14042	2024-07-18	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	6.0	0.004	0.99	0.0	0.22	15.46	0.00	2.133	8.39	1.11	8.3	91.7	0.0	-2.81	2.23	0.33	0.71	4.39	3105	204	6	0	0	0	1593	logfile
✔	7QK1	14028	2024-07-18	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.005	0.77	0.0	0.05	16.62	0.00	2.249	6.12	5.56	3.4	96.6	0.0	-1.92	2.22	0.42	0.85	4.24	3444	450	6	0	0	0	0	logfile
✔	7QL4	14063	2024-07-19	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.005	1.22	0.0	0.05	15.22	0.01	2.037	8.35	2.78	2.5	97.5	0.0	-2.02	3.12	0.31	0.75	3.50	7074	456	6	0	0	0	3606	logfile
✔	8PUW	17949	2024-07-20	2023-07-17	3.01	3.27	3.01	3.2	0.004	0.69	0.0	0.04	12.23	0.01	2.276	3.16	0.00	1.6	98.4	0.0	0.73	0.85	0.88	3.21	3.2	0.004	0.55	0.0	0.04	13.18	0.00	2.190	5.41	1.01	1.6	98.4	0.0	2.18	0.26	0.87	0.90	2.89	11160	1442	4	0	0	0	0	logfile
✔	7LQF	23484	2024-07-19	2021-02-13	3.8	3.13	—	4.0	0.016	1.46	0.0	0.03	18.37	0.00	2.258	22.81	2.08	0.0	100.0	0.0	-4.77	0.59	0.78	4.63	3.2	0.154	6.28	243.0	0.42	27.19	0.03	1.692	204.33	25.78	61.7	36.3	2.0	-9.51	2.02	0.69	0.87	3.22	5376	512	64	0	0	0	0	logfile
✔	7LQE	23483	2024-07-19	2021-02-13	3.4	3.06	—	3.4	0.016	1.42	0.0	0.04	20.72	0.00	2.423	23.27	14.58	0.0	100.0	0.0	-5.94	0.57	0.80	5.06	3.2	0.149	5.03	243.0	0.38	26.33	0.02	1.712	136.61	27.78	32.6	67.4	0.0	-7.49	1.53	0.65	0.90	1.99	6048	576	72	0	0	0	0	logfile
✘	8BQW	16189	2024-07-22	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✔	6VK9	21225	2024-07-22	2020-01-19	3.8	3.95	—	3.9	0.010	1.57	16.0	0.09	13.96	0.01	2.023	6.68	0.00	9.9	90.1	0.0	-3.98	0.66	0.84	3.12	3.9	0.003	0.72	0.0	0.04	16.16	0.00	2.092	14.82	3.75	9.4	90.6	0.0	-1.14	1.13	0.67	0.84	2.99	19808	2640	32	0	0	0	0	logfile
✔	7QL3	14062	2024-07-18	2021-12-19	3.32	3.47	3.01	3.5	0.011	2.01	8.0	0.11	12.27	0.01	2.489	0.00	0.00	7.7	92.3	0.0	-3.47	0.46	0.82	4.29	3.5	0.003	0.81	0.0	0.05	13.77	0.01	2.131	4.53	2.15	4.1	95.9	0.0	-2.57	1.14	0.43	0.83	4.68	3246	426	6	0	0	0	0	logfile
✔	7P66	13219	2024-07-18	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.005	0.61	0.0	0.05	15.15	0.00	2.180	6.01	3.01	5.3	94.7	0.0	-2.91	1.34	0.47	0.84	4.52	4060	540	5	0	0	0	0	logfile
✔	6CU8	7619	2024-07-18	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.2	0.005	0.77	0.0	0.06	11.70	0.00	2.139	16.86	3.55	14.9	85.1	0.0	-2.95	1.76	0.42	0.73	2.19	2880	410	10	0	0	0	0	logfile
✔	6CU7	7618	2024-07-18	2018-03-23	3.5	3.63	—	4.3	0.007	0.99	0.0	0.07	9.61	0.00	2.346	4.58	2.38	15.5	84.5	0.0	-4.74	0.38	0.72	2.52	4.3	0.005	0.75	0.0	0.05	14.53	0.00	2.172	17.96	6.19	14.8	85.2	0.0	-4.71	1.75	0.38	0.73	1.70	4140	600	10	0	0	0	0	logfile
✔	7K3R	22656	2024-07-21	2020-09-12	3.2	3.51	—	3.4	0.006	0.78	0.0	0.05	9.10	0.00	2.229	6.35	0.00	2.2	97.8	0.0	-3.11	0.72	0.82	3.76	3.4	0.004	0.73	0.0	0.04	17.83	0.00	2.177	17.88	2.38	4.7	95.3	0.0	2.46	1.05	0.72	0.90	2.97	16170	1995	21	0	0	0	0	logfile
✔	7E0F	30931	2024-07-18	2021-01-27	3.02	3.18	—	3.5	0.016	0.99	0.0	0.07	15.88	0.00	2.341	9.76	0.00	12.8	87.2	0.0	-5.10	0.39	0.81	5.04	3.3	0.002	0.56	0.0	0.05	17.15	0.00	2.520	6.34	4.90	7.1	92.9	0.0	-3.39	0.48	0.38	0.79	4.20	2022	294	6	0	0	0	0	logfile
✔	8A7Q	15224	2024-07-19	2022-06-21	2.8	3.63	2.72	3.4	0.004	0.67	0.0	0.05	11.64	0.00	2.197	7.83	0.00	3.2	96.8	0.0	-5.05	0.45	0.75	5.43	3.4	0.005	1.11	0.0	0.05	15.43	0.00	2.102	16.86	3.42	8.9	91.1	0.0	-4.99	5.24	0.41	0.75	3.02	6492	768	12	0	0	0	0	logfile
✔	6QJH	4563	2024-07-18	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.62	0.0	0.05	15.47	0.00	2.267	2.99	3.27	3.5	96.5	0.0	-2.60	1.52	0.31	0.78	2.54	1302	177	3	0	0	0	0	logfile

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