Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8ES7	28570	2024-07-19	2022-10-13	3.04	3.42	3.02	3.3	0.004	0.68	0.0	0.05	16.73	0.00	2.133	6.93	0.10	5.9	94.1	0.0	0.86	0.67	0.85	3.35	3.3	0.004	0.62	0.0	0.04	15.38	0.00	2.173	6.30	1.89	5.5	94.5	0.0	0.93	0.31	0.67	0.87	3.19	8822	1080	18	0	19	0	0	logfile
✔	8DMH	27538	2024-07-21	2022-07-08	3.19	3.54	3.17	3.2	0.003	0.60	0.0	0.04	16.83	0.00	2.149	9.05	0.00	4.3	95.7	0.0	-1.30	0.82	0.83	3.37	3.2	0.004	0.64	0.0	0.05	15.29	0.00	2.091	9.15	1.87	3.3	96.7	0.0	-0.54	4.01	0.83	0.84	2.69	14259	1725	36	0	45	0	0	logfile
✔	8D6A	27221	2024-07-19	2022-06-06	3.54	3.92	3.53	3.7	0.003	0.56	0.0	0.04	16.68	0.00	2.261	6.62	0.00	8.0	92.0	0.0	-3.01	0.75	0.72	0.93	3.7	0.003	0.67	0.0	0.04	14.53	0.00	2.083	9.74	2.41	10.1	89.9	0.0	-1.52	0.70	0.77	0.78	1.51	7912	963	9	0	15	0	0	logfile
✔	8XCW	38257	2024-07-18	2023-12-10	2.87	3.04	1.36	3.0	0.009	1.10	0.0	0.06	16.21	0.01	2.363	4.68	3.54	2.2	97.8	0.0	1.28	0.49	0.89	4.44	3.0	0.005	0.54	0.0	0.04	17.03	0.00	2.215	7.84	1.47	3.1	96.9	0.0	1.83	0.43	0.49	0.92	3.80	3347	416	2	0	2	17	0	logfile
✔	8C98	16505	2024-07-25	2023-01-21	3.66	4.27	3.73	3.6	0.002	0.38	0.0	0.03	22.60	0.00	1.923	5.79	0.00	4.7	95.3	0.0	1.35	0.79	0.72	1.74	3.6	0.004	0.57	0.0	0.03	23.01	0.00	2.084	14.57	2.73	8.2	91.8	0.0	-0.81	0.59	0.79	0.83	1.31	30284	1080	12	1018	0	0	0	logfile
✔	8HKC	34849	2024-07-24	2022-11-25	2.49	2.34	2.50	2.3	0.002	0.45	0.0	0.04	17.03	0.00	2.123	4.80	0.00	1.5	98.5	0.0	0.81	0.77	0.86	3.35	2.3	0.002	0.53	0.0	0.04	18.68	0.00	2.015	5.76	0.88	2.0	98.0	0.0	0.99	0.35	0.76	0.88	3.30	25779	3067	8	83	3	0	0	logfile
✔	8DZ4	27788	2024-07-22	2022-08-06	3.2	3.45	3.17	3.4	0.002	0.55	0.0	0.04	14.79	0.00	2.190	6.88	0.09	2.9	97.1	0.0	0.22	0.72	0.85	3.75	3.4	0.004	0.57	0.0	0.04	15.81	0.00	2.165	8.59	2.72	3.4	96.6	0.0	-0.07	1.21	0.69	0.84	3.64	20290	2618	23	0	0	0	0	logfile
✔	8CUA	26997	2024-07-20	2022-05-17	2.44	2.61	2.45	2.8	0.003	0.58	0.0	0.04	15.57	0.00	2.226	4.24	0.00	1.8	98.2	0.0	2.01	0.64	0.83	1.77	2.7	0.003	0.54	0.0	0.04	16.37	0.00	2.231	4.04	1.73	2.0	98.0	0.0	2.18	0.90	0.61	0.84	1.89	9531	1248	9	0	3	30	0	logfile
✔	8B4H	15848	2024-07-25	2022-09-20	3.35	3.33	3.32	3.4	0.004	0.71	0.0	0.04	22.55	0.01	2.084	11.08	0.00	2.7	97.3	0.0	-0.27	0.64	0.65	2.33	3.4	0.004	0.60	0.0	0.04	22.43	0.00	1.832	10.44	1.16	5.5	94.5	0.0	-0.75	1.24	0.67	0.72	2.76	31138	1440	10	224	2	0	14570	logfile
✔	8GP5	34190	2024-07-19	2022-08-25	4.05	4.31	3.42	4.2	0.005	0.80	0.0	0.06	16.71	0.00	2.199	12.31	0.18	5.4	94.6	0.0	-1.09	0.61	0.79	—	4.2	0.003	0.70	0.0	0.05	13.75	0.00	2.221	12.59	0.18	5.8	94.2	0.0	-1.04	1.14	0.60	0.79	—	5470	646	11	0	26	0	0	logfile
✔	8F7C	28902	2024-07-21	2022-11-18	3.92	4.16	3.93	4.2	0.002	0.52	0.0	0.04	13.95	0.00	1.675	4.95	0.00	3.2	96.8	0.0	0.02	0.64	0.82	2.00	4.2	0.003	0.60	0.0	0.04	15.93	0.00	2.167	4.54	1.97	2.9	97.1	0.0	1.42	0.41	0.66	0.82	1.76	15925	2009	7	0	0	0	0	logfile
✔	8HAH	34589	2024-07-22	2022-10-26	3.9	5.19	3.80	2.8	0.003	0.55	0.0	0.03	24.02	0.00	2.274	8.74	0.00	2.6	97.4	0.0	1.59	0.83	0.62	0.32	2.8	0.004	0.68	0.0	0.04	26.92	0.00	2.147	18.27	1.80	3.6	96.4	0.0	0.98	2.57	0.90	0.81	0.66	17096	1287	11	328	0	0	0	logfile
✔	8FZQ	29637	2024-07-20	2023-01-29	4.3	3.97	4.18	4.1	0.002	0.53	0.0	0.04	15.43	0.00	1.999	8.42	0.10	2.1	97.9	0.0	1.00	0.59	0.69	—	4.1	0.002	0.55	0.0	0.04	14.52	0.00	1.906	8.79	0.00	2.3	97.7	0.0	0.62	1.00	0.63	0.77	—	9244	1133	3	0	23	0	0	logfile
✔	7Z8T	14563	2024-07-22	2022-03-18	3.0	2.27	2.91	2.0	0.002	0.50	0.0	0.04	13.08	0.00	1.988	5.05	0.05	2.0	98.0	0.0	1.77	0.80	0.79	2.41	1.9	0.005	0.62	0.0	0.04	16.43	0.00	2.000	6.37	2.46	2.7	97.3	0.0	1.66	0.91	0.81	0.83	2.33	18077	2395	6	0	3	0	0	logfile
✔	7UPK	26668	2024-07-21	2022-04-15	2.8	3.03	2.80	3.0	0.003	0.57	0.0	0.04	12.65	0.00	2.156	5.84	0.06	1.7	98.3	0.0	-0.01	0.70	0.81	5.07	3.1	0.003	0.55	0.0	0.04	15.74	0.00	2.159	7.49	3.00	1.7	98.3	0.0	0.42	0.90	0.69	0.87	4.95	15276	1983	9	0	0	0	0	logfile
✔	8DFQ	27411	2024-07-21	2022-06-22	3.96	4.53	3.89	4.0	0.007	1.12	0.0	0.06	13.05	0.01	2.270	0.98	0.15	1.8	98.2	0.0	-1.00	0.84	0.79	2.57	4.0	0.004	0.64	0.0	0.04	11.48	0.00	2.109	3.84	0.60	5.1	94.9	0.0	-0.12	0.56	0.84	0.81	1.79	14233	1114	8	0	7	0	6514	logfile
✔	8C99	16506	2024-07-24	2023-01-21	3.29	3.69	3.33	3.3	0.002	0.39	0.0	0.03	22.33	0.00	1.957	5.35	0.00	4.7	95.3	0.0	0.97	0.79	0.79	2.26	3.3	0.006	0.66	0.0	0.04	22.76	0.00	2.068	12.62	2.00	8.6	91.4	0.0	-0.99	0.55	0.81	0.85	2.21	27988	987	11	945	0	0	0	logfile
✘	7Z8V	14564	2024-07-22	2022-03-18	2.7	2.20	2.73	1.9	0.003	0.51	0.0	0.04	13.97	0.00	1.989	4.21	0.00	1.7	98.3	0.0	1.51	0.80	0.81	2.95	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18313	2417	6	0	3	0	0	logfile
✔	8DWJ	27756	2024-07-18	2022-08-01	3.9	3.19	3.82	3.1	0.005	1.05	0.0	0.06	16.24	0.01	2.218	13.71	0.33	5.9	94.1	0.0	-2.71	0.33	0.57	0.88	3.1	0.003	0.69	0.0	0.05	18.53	0.01	2.186	16.56	2.99	5.0	95.0	0.0	-1.22	1.74	0.33	0.57	0.97	3043	339	4	11	2	0	0	logfile
✔	8CDK	16576	2024-07-22	2023-01-31	3.32	2.38	3.25	2.0	0.003	0.57	0.0	0.04	11.83	0.00	2.006	4.82	0.00	1.8	98.2	0.0	1.31	0.80	0.81	2.60	2.0	0.002	0.53	0.0	0.04	14.91	0.00	2.117	4.76	1.48	1.6	98.4	0.0	2.14	0.38	0.82	0.83	2.12	16905	2392	6	0	3	0	0	logfile

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