Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GS3	34219	2024-07-21	2022-09-04	3.9	3.16	3.68	3.0	0.013	1.32	0.0	0.05	15.90	0.01	1.810	20.53	0.00	3.5	96.5	0.0	0.27	0.83	0.75	1.57	3.0	0.013	1.32	0.0	0.05	15.94	0.01	1.812	21.50	0.11	3.5	96.5	0.0	0.27	0.05	0.83	0.76	1.57	8376	1067	2	0	0	0	0	logfile
✔	7R6L	24281	2024-07-19	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.59	0.01	1.877	7.46	0.00	0.0	0.0	0.0	—	0.08	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	7T2E	25611	2024-07-18	2021-12-03	2.7	3.14	—	3.0	0.003	0.54	0.0	0.04	16.11	0.00	2.242	1.92	1.18	0.3	99.7	0.0	0.14	0.34	0.84	5.04	3.0	0.002	0.48	0.0	0.04	16.27	0.00	2.223	2.35	2.36	0.6	99.4	0.0	0.37	0.12	0.36	0.86	4.66	2390	312	2	0	0	0	0	logfile
✔	7NKJ	12441	2024-07-28	2021-02-18	2.17	2.16	—	2.1	0.005	0.59	0.0	0.05	17.26	0.00	1.958	2.88	1.05	1.8	98.2	0.1	1.04	0.80	0.89	6.04	2.1	0.005	0.56	0.0	0.04	17.05	0.00	1.724	2.66	0.84	1.8	98.1	0.1	1.21	0.13	0.80	0.90	6.04	45605	2945	20	0	11	516	22478	logfile
✔	8HoB	34924	2024-07-21	2022-12-09	2.19	2.69	2.23	2.6	0.008	0.75	4.0	0.07	17.24	0.00	2.230	3.31	1.23	3.1	96.9	0.0	0.68	0.66	0.85	5.42	2.6	0.003	0.55	0.0	0.05	17.31	0.00	2.189	3.31	1.66	3.3	96.7	0.0	0.69	0.13	0.73	0.89	5.59	13449	1622	4	0	0	333	0	logfile
✔	8Ho8	34922	2024-07-21	2022-12-09	2.24	2.63	2.22	2.6	0.003	0.59	0.0	0.05	17.23	0.00	2.278	2.79	1.30	3.3	96.7	0.0	0.44	0.73	0.89	5.92	2.6	0.003	0.59	0.0	0.05	17.28	0.00	2.232	2.83	2.10	3.4	96.6	0.0	0.57	0.14	0.77	0.90	5.66	13454	1618	6	0	4	309	0	logfile
✔	7PM4	13520	2024-07-21	2021-09-01	2.49	2.26	—	2.5	0.003	0.56	0.0	0.04	16.86	0.00	2.237	4.75	1.06	4.9	95.1	0.0	0.76	0.79	0.88	5.85	2.5	0.003	0.56	0.0	0.04	16.65	0.00	2.261	3.88	2.33	6.1	93.9	0.0	0.57	0.14	0.80	0.90	5.82	14288	1724	12	0	8	60	0	logfile
✔	8C54	16433	2024-07-21	2023-01-06	2.52	2.38	2.49	2.5	0.004	0.56	0.0	0.04	18.81	0.00	2.233	6.25	3.43	2.2	97.8	0.0	0.62	0.72	0.84	4.48	2.5	0.005	0.60	0.0	0.04	17.31	0.00	2.121	6.79	2.49	3.1	96.9	0.0	0.75	0.14	0.72	0.84	4.85	14266	1928	12	0	4	330	0	logfile
✔	7TYJ	26181	2024-07-19	2022-02-13	3.3	3.29	3.45	3.3	0.004	0.62	0.0	0.05	16.63	0.00	2.161	9.16	0.44	10.3	89.6	0.1	-1.90	0.67	0.83	3.05	3.3	0.002	0.59	0.0	0.04	16.94	0.00	2.233	8.76	2.91	9.5	90.3	0.1	-1.97	0.15	0.66	0.82	3.07	6338	808	2	0	0	0	0	logfile
✔	8Ho7	34921	2024-07-21	2022-12-09	2.59	2.93	2.60	2.9	0.002	0.53	0.0	0.04	17.79	0.00	2.118	4.39	2.31	3.6	96.4	0.0	0.25	0.71	0.91	5.15	2.9	0.003	0.55	0.0	0.04	17.82	0.00	2.139	4.86	2.31	3.4	96.6	0.0	0.35	0.15	0.64	0.88	5.09	13227	1620	4	0	0	112	0	logfile
✔	7UZU	26918	2024-07-19	2022-05-09	2.3	2.23	2.31	2.2	0.003	0.57	0.0	0.04	17.47	0.01	2.124	3.14	0.52	3.1	96.9	0.0	1.73	0.60	0.87	5.53	2.2	0.002	0.49	0.0	0.04	17.61	0.00	2.110	3.83	0.78	3.5	96.5	0.0	2.64	0.16	0.59	0.87	5.46	7399	483	4	0	0	79	3655	logfile
✔	8iQ4	35657	2024-07-19	2023-03-15	2.7	3.02	2.81	3.1	0.003	0.60	0.0	0.04	14.91	0.00	2.218	5.45	0.58	4.0	96.0	0.0	1.43	0.69	0.83	4.47	3.1	0.003	0.51	0.0	0.04	15.36	0.00	2.153	6.25	2.61	4.3	95.7	0.0	1.44	0.16	0.68	0.83	4.59	7080	954	6	0	1	0	0	logfile
✔	8BXG	16318	2024-07-22	2022-12-08	3.16	3.34	3.18	3.3	0.003	0.54	0.0	0.03	19.91	0.00	2.245	4.29	0.12	7.4	92.6	0.0	1.42	0.66	0.81	1.88	3.3	0.002	0.52	0.0	0.03	19.03	0.00	2.010	4.98	1.84	7.2	92.8	0.0	1.54	0.17	0.66	0.81	1.89	17301	1093	4	0	6	0	8796	logfile
✔	8SMX	40605	2024-07-22	2023-04-26	3.2	3.37	3.21	3.3	0.003	0.57	0.0	0.04	26.38	0.00	1.330	4.49	0.00	1.9	98.1	0.0	1.43	0.74	0.85	2.99	3.3	0.004	0.58	0.0	0.04	26.69	0.00	2.203	4.33	0.82	2.3	97.7	0.0	1.43	0.18	0.73	0.87	2.94	13998	1000	13	294	2	0	0	logfile
✔	8SMY	40606	2024-07-22	2023-04-26	3.2	3.41	3.24	3.4	0.003	0.54	0.0	0.03	26.40	0.01	1.330	5.54	0.00	1.9	98.1	0.0	1.40	0.73	0.85	3.28	3.4	0.005	0.57	0.0	0.04	26.73	0.00	2.171	3.79	2.34	3.4	96.6	0.0	1.28	0.18	0.72	0.86	2.95	13998	1000	13	294	2	0	0	logfile
✔	8R4C	18885	2024-07-18	2023-11-13	3.55	2.98	3.52	2.9	0.004	0.72	0.0	0.04	18.00	0.01	2.207	11.23	1.16	9.5	90.5	0.0	-2.95	0.64	0.76	1.62	2.9	0.004	0.72	0.0	0.04	18.37	0.01	2.193	11.73	7.21	11.7	88.3	0.0	-2.83	0.18	0.63	0.76	1.85	4027	553	2	0	0	0	0	logfile
✔	8G6G	29767	2024-07-20	2023-02-15	2.93	3.16	2.92	3.1	0.003	0.57	0.0	0.04	28.34	0.00	2.238	4.36	1.16	2.1	97.9	0.0	2.83	0.86	0.86	2.41	3.1	0.006	0.60	0.0	0.04	28.31	0.00	2.129	4.36	2.03	1.6	98.4	0.0	2.67	0.18	0.88	0.90	2.23	12985	825	11	314	0	0	0	logfile
✔	7R6M	24282	2024-07-19	2021-06-22	3.68	3.27	—	3.4	0.006	0.94	0.0	0.04	25.58	0.01	2.005	4.72	0.00	0.0	0.0	0.0	—	0.53	0.72	—	3.4	0.007	0.85	0.0	0.04	25.53	0.01	1.758	17.07	0.00	0.0	0.0	0.0	—	0.18	0.55	0.73	—	7755	0	3	362	13	0	0	logfile
✔	8U8Y	42029	2024-07-23	2023-09-18	2.1	2.25	2.12	2.3	0.007	0.75	0.0	0.05	17.23	0.01	2.328	2.24	1.76	2.6	97.4	0.0	0.39	0.74	0.86	5.43	2.3	0.004	0.66	0.0	0.05	17.33	0.00	2.319	3.08	1.80	2.3	97.7	0.0	0.94	0.18	0.72	0.87	5.73	22616	2936	16	0	16	0	0	logfile
✔	8G14	29661	2024-07-20	2023-02-01	2.3	3.02	2.27	2.7	0.005	0.72	0.0	0.06	15.72	0.01	2.404	2.41	1.13	3.9	96.1	0.0	-1.00	0.89	0.94	5.31	2.7	0.004	0.52	0.0	0.05	15.68	0.00	2.325	1.91	0.85	3.0	97.0	0.0	0.74	0.18	0.89	0.94	5.60	10020	1336	4	0	0	0	0	logfile

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