Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Z8L	14556	2024-07-22	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	9.68	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.002	0.56	0.0	0.04	6.65	0.00	1.847	2.10	0.00	2.8	97.2	0.0	2.03	0.69	0.81	0.84	—	16513	3311	3	0	5	0	0	logfile
✔	7V7o	31776	2024-07-24	2021-08-21	2.9	3.72	—	3.2	0.007	0.69	0.0	0.05	14.12	0.00	2.158	7.07	0.00	5.5	94.4	0.1	-0.05	0.89	0.88	2.42	3.2	0.007	0.65	0.0	0.05	14.29	0.00	2.140	7.39	1.04	5.3	94.6	0.1	0.16	0.25	0.89	0.88	2.12	25325	3092	41	0	83	0	0	logfile
✔	6PLQ	20372	2024-07-21	2019-07-01	3.4	4.30	—	4.3	0.002	0.53	0.0	0.05	11.13	0.00	2.285	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.005	0.99	0.0	0.05	14.54	0.00	2.103	17.65	2.58	6.0	94.0	0.0	-1.13	2.10	0.73	0.79	1.29	14240	1730	15	0	20	0	0	logfile
✔	7JQQ	22441	2024-07-25	2020-08-11	4.1	4.43	—	4.3	0.004	0.88	0.0	0.04	26.55	0.01	1.379	26.31	0.00	9.7	90.3	0.0	-2.31	0.35	0.57	—	4.3	0.004	0.84	0.0	0.04	26.23	0.01	1.916	26.29	0.00	10.8	89.2	0.0	-2.57	0.51	0.35	0.59	—	28416	1635	15	705	6	0	0	logfile
✔	7S4X	24838	2024-07-21	2021-09-09	2.76	3.30	—	3.1	0.006	0.60	0.0	0.04	19.28	0.00	1.878	7.05	0.00	4.0	96.0	0.0	0.02	0.87	0.89	4.31	3.1	0.003	0.52	0.0	0.04	19.52	0.00	1.933	7.81	0.66	3.1	96.9	0.0	0.88	0.29	0.83	0.88	3.68	14491	1354	10	161	5	7	0	logfile
✔	7V7D	31767	2024-07-24	2021-08-21	3.0	3.88	—	3.3	0.005	0.63	0.0	0.05	13.57	0.00	2.088	6.90	0.00	4.3	95.7	0.0	0.03	0.87	0.85	2.00	3.3	0.005	0.63	0.0	0.05	14.20	0.00	2.106	8.96	1.22	5.2	94.7	0.1	-0.12	0.35	0.87	0.86	2.00	25353	3095	40	0	82	0	0	logfile
✔	7L8S	23235	2024-07-22	2020-12-31	4.3	4.42	4.07	4.3	0.022	1.74	3.0	0.15	11.45	0.01	2.287	1.20	0.00	1.3	98.7	0.0	1.27	0.78	0.80	—	4.3	0.004	0.71	0.0	0.05	11.50	0.00	2.186	12.16	0.00	4.1	95.9	0.0	-0.11	0.92	0.79	0.82	—	16057	1713	42	0	315	0	0	logfile
✔	8GS6	34221	2024-07-24	2022-09-05	2.86	3.44	2.87	3.3	0.004	0.62	0.0	0.05	14.84	0.00	2.140	6.25	0.00	4.4	95.6	0.0	-0.45	0.83	0.84	2.81	3.3	0.004	0.62	0.0	0.05	15.65	0.00	2.141	6.31	1.50	5.1	94.9	0.0	-0.32	0.32	0.84	0.85	2.69	24538	3058	11	0	41	0	0	logfile
✔	8FF3	29037	2024-07-18	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.004	0.49	0.0	0.05	11.72	0.00	2.004	5.95	0.93	1.4	98.6	0.0	-2.33	0.51	0.36	0.72	4.63	2190	150	6	0	0	0	1122	logfile
✔	7WSW	32769	2024-07-21	2022-02-02	3.4	3.86	—	3.7	0.003	0.55	0.0	0.04	13.26	0.00	2.149	6.77	0.00	5.5	94.5	0.0	0.70	0.64	0.84	2.21	3.7	0.002	0.51	0.0	0.04	14.51	0.00	2.184	7.00	0.70	5.9	94.1	0.0	1.14	1.11	0.65	0.85	1.96	15051	1868	8	0	7	0	0	logfile
✔	7V82	31787	2024-07-27	2021-08-22	2.8	3.88	—	3.0	0.005	0.62	0.0	0.05	15.22	0.00	2.150	10.11	0.00	5.1	94.9	0.0	-0.41	0.84	0.78	1.93	3.0	0.002	0.60	0.0	0.04	15.08	0.00	2.187	9.52	1.14	5.2	94.8	0.0	-0.06	0.31	0.87	0.83	1.59	40092	4902	39	0	84	0	0	logfile
✔	7WU9	32824	2024-07-19	2022-02-07	3.375	3.51	3.21	3.4	0.002	0.42	0.0	0.04	13.28	0.00	2.137	6.33	0.00	3.0	97.0	0.0	1.21	0.71	0.82	3.04	3.4	0.003	0.59	0.0	0.04	15.36	0.00	2.208	7.68	2.59	2.4	97.6	0.0	1.17	0.78	0.69	0.84	2.26	7369	1030	5	0	0	0	0	logfile
✔	7TYV	26195	2024-07-22	2022-02-14	2.8	2.28	2.98	2.1	0.005	0.71	0.0	0.05	17.12	0.00	2.081	7.27	0.00	5.0	95.0	0.0	-0.19	0.75	0.72	2.31	2.0	0.004	0.65	0.0	0.05	16.14	0.00	2.107	7.15	2.72	5.3	94.7	0.0	-0.13	0.32	0.77	0.76	2.15	17306	2114	30	0	58	0	0	logfile
✔	7UNM	26627	2024-07-20	2022-04-11	2.61	3.48	2.66	3.3	0.002	0.43	0.0	0.04	11.23	0.00	2.087	3.44	0.00	0.5	99.5	0.0	3.34	0.67	0.82	2.41	3.3	0.003	0.54	0.0	0.04	14.37	0.00	1.949	4.30	0.48	1.9	98.1	0.0	4.15	0.81	0.56	0.79	1.71	11694	736	6	0	5	55	5920	logfile
✔	7F63	31471	2024-07-18	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.003	0.82	0.0	0.05	16.31	0.00	2.137	17.31	4.31	11.9	87.6	0.5	-3.04	1.52	0.65	0.70	1.90	3375	429	3	0	0	0	0	logfile
✔	7Z1Z	14453	2024-07-27	2022-02-25	3.5	2.62	3.61	1.8	0.002	0.51	0.0	0.04	15.20	0.00	2.224	7.50	0.00	2.4	97.6	0.0	0.26	0.64	0.65	1.09	1.7	0.005	0.80	2.0	0.04	18.09	0.00	1.797	15.18	2.74	3.5	96.5	0.0	0.25	0.67	0.67	0.68	1.56	35605	4031	36	140	12	0	0	logfile
✔	7D4G	30573	2024-07-18	2020-09-23	3.9	4.13	—	4.1	0.006	1.06	1.0	0.06	9.87	0.01	1.917	36.47	0.00	10.7	88.9	0.4	-3.84	0.56	0.52	1.34	4.1	0.004	0.85	0.0	0.05	15.49	0.00	2.183	22.98	4.63	12.3	87.4	0.2	-2.13	3.65	0.65	0.71	1.92	3925	502	3	0	0	0	0	logfile
✔	7KDE	22820	2024-07-24	2020-10-08	3.55	3.68	—	3.6	0.009	1.06	0.0	0.06	17.74	0.01	2.097	9.71	0.00	12.5	87.1	0.4	-3.58	0.73	0.86	3.16	3.6	0.003	0.72	0.0	0.05	14.96	0.00	2.081	8.20	2.96	7.7	92.0	0.3	-2.24	0.39	0.72	0.85	2.29	25487	3069	48	0	134	0	0	logfile
✔	7STE	25426	2024-07-25	2021-11-12	2.73	3.42	—	3.2	0.002	0.48	0.0	0.04	14.06	0.00	2.030	3.56	0.00	2.0	98.0	0.0	3.20	0.82	0.83	2.63	3.2	0.004	0.58	0.0	0.04	15.47	0.00	1.926	6.17	0.76	2.5	97.5	0.0	2.71	1.19	0.81	0.87	2.91	28628	1774	10	0	6	0	14379	logfile
✔	8HHY	34807	2024-07-24	2022-11-17	2.77	2.97	2.80	2.9	0.004	0.69	0.0	0.05	14.26	0.00	2.074	14.92	0.00	5.6	94.3	0.1	-1.92	0.55	0.54	1.90	2.9	0.007	0.81	0.0	0.05	15.86	0.00	1.987	17.88	2.48	6.5	93.5	0.0	-1.87	0.42	0.60	0.63	1.80	27420	3483	16	0	32	0	0	logfile

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