Table showing results for July 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oVT	13089	2024-07-19	2021-06-15	2.69	2.94	2.42	2.8	0.017	1.67	0.0	0.10	13.71	0.01	2.550	2.09	0.00	3.0	97.0	0.0	-3.46	0.53	0.82	6.84	2.8	0.008	0.70	0.0	0.04	17.65	0.00	2.257	7.32	3.82	7.8	92.2	0.0	-3.94	0.48	0.56	0.86	6.50	6588	828	12	0	0	0	0	logfile
✔	6WQK	21871	2024-07-18	2020-04-29	3.1	3.26	—	3.3	0.003	0.70	0.0	0.04	14.47	0.00	2.272	4.54	0.00	1.8	98.2	0.0	-5.40	0.48	0.84	4.99	3.3	0.005	0.73	0.0	0.05	13.79	0.00	2.240	4.81	1.62	4.4	95.6	0.0	-4.46	0.45	0.45	0.85	5.58	2070	285	5	0	0	0	0	logfile
✔	6iZV	9758	2024-07-19	2018-12-20	4.2	4.27	—	4.2	0.005	0.90	0.0	0.05	10.55	0.01	2.170	5.77	0.00	4.9	95.1	0.0	-3.60	0.68	0.81	—	4.1	0.005	0.76	0.0	0.05	12.92	0.00	1.869	15.90	0.00	7.8	92.2	0.0	-1.32	0.97	0.70	0.83	—	5624	698	4	0	4	0	0	logfile
✔	7BX7	30235	2024-07-18	2020-04-17	2.8	2.94	—	2.9	0.009	0.84	0.0	0.04	12.96	0.00	2.228	15.34	0.00	9.3	90.7	0.0	-5.83	0.40	0.79	6.36	2.9	0.002	0.50	0.0	0.04	13.82	0.00	2.184	8.97	1.15	7.0	93.0	0.0	-5.39	0.52	0.40	0.77	5.28	1896	270	6	0	0	0	0	logfile
✔	6G1S	4340	2024-07-20	2018-03-21	3.93	4.13	3.54	4.0	0.008	0.89	0.0	0.05	13.70	0.00	2.015	12.38	0.00	12.7	87.3	0.0	-4.00	0.62	0.78	1.56	4.0	0.002	0.64	0.0	0.04	16.77	0.00	1.995	25.28	1.58	9.8	90.2	0.0	0.24	1.85	0.62	0.78	1.99	9891	645	4	30	1	0	4096	logfile
✔	7NCi	12267	2024-07-20	2021-01-28	3.55	3.67	3.44	4.0	0.012	1.57	2.0	0.10	15.57	0.01	2.481	0.35	0.00	8.9	91.1	0.0	-3.74	0.68	0.59	1.81	3.8	0.004	0.63	2.0	0.05	15.17	0.00	1.925	22.72	6.30	14.3	85.7	0.0	-4.47	1.57	0.64	0.58	0.62	11292	816	12	0	0	0	5796	logfile
✔	8JAR	36132	2024-07-22	2023-05-07	3.3	3.63	3.32	3.6	0.004	0.54	0.0	0.04	14.40	0.00	2.172	7.43	0.00	3.4	96.6	0.0	-0.87	0.74	0.81	2.67	3.6	0.004	0.56	0.0	0.04	16.50	0.00	2.129	11.33	1.70	3.5	96.5	0.0	0.44	0.92	0.74	0.85	2.28	16841	2071	11	0	1	0	0	logfile
✔	8AUR	15673	2024-07-19	2022-08-25	3.47	3.44	3.63	3.6	0.002	0.54	0.0	0.04	13.41	0.00	2.350	6.62	0.00	5.6	94.4	0.0	-1.30	0.72	0.82	2.41	3.5	0.004	0.62	0.0	0.04	16.05	0.00	2.252	7.55	3.21	8.1	91.8	0.1	-1.25	1.64	0.71	0.83	2.65	5409	699	3	0	0	0	0	logfile
✔	7YL3	33902	2024-07-18	2022-07-25	3.2	3.58	3.19	3.5	0.008	2.13	0.0	0.06	10.63	0.00	1.654	22.50	0.00	3.3	96.7	0.0	-4.03	0.45	0.76	4.44	3.5	0.003	0.70	0.0	0.04	13.32	0.00	2.235	6.58	4.63	5.6	94.4	0.0	-4.77	1.32	0.42	0.75	4.91	2958	396	12	0	0	0	0	logfile
✔	7NCG	12265	2024-07-20	2021-01-28	3.43	3.45	3.16	3.6	0.012	2.20	0.0	0.08	10.99	0.01	2.685	0.58	0.00	7.8	92.2	0.0	-1.51	0.58	0.69	3.64	3.5	0.002	0.61	0.0	0.05	13.61	0.00	2.003	7.20	3.29	7.5	92.5	0.0	-2.07	1.41	0.61	0.73	3.22	10428	732	12	0	0	0	5376	logfile
✔	6G1X	4341	2024-07-20	2018-03-22	3.93	4.03	3.76	4.0	0.012	0.99	0.0	0.05	13.24	0.01	2.008	12.96	0.00	12.7	87.3	0.0	-3.99	0.59	0.75	2.07	4.0	0.003	0.65	0.0	0.04	16.62	0.00	1.953	26.71	1.75	9.9	90.1	0.0	-0.34	1.52	0.59	0.77	2.35	9989	648	4	30	1	0	4182	logfile
✔	7F29	31428	2024-07-18	2021-06-10	3.1	3.08	—	3.2	0.014	1.07	0.0	0.06	14.68	0.00	2.305	11.88	0.00	14.3	85.7	0.0	-3.96	0.42	0.83	5.02	3.2	0.003	0.61	0.0	0.05	14.38	0.00	2.372	5.10	0.00	10.5	89.5	0.0	-2.12	1.54	0.42	0.84	5.17	1794	222	18	0	18	0	0	logfile
✔	7YL7	33903	2024-07-18	2022-07-25	3.3	3.54	3.17	3.5	0.009	0.87	0.0	0.04	11.50	0.00	2.196	22.56	0.00	4.9	95.1	0.0	-5.16	0.45	0.78	4.82	3.4	0.007	0.73	0.0	0.04	13.65	0.00	2.130	11.65	2.47	12.3	87.7	0.0	-5.21	0.74	0.44	0.78	5.09	2988	402	12	0	0	0	0	logfile
✔	7Q3U	13795	2024-07-18	2021-10-28	3.7	3.43	3.48	4.1	0.005	1.17	0.0	0.05	16.84	0.01	2.120	36.48	0.00	10.7	89.3	0.0	-5.79	0.23	0.47	0.88	4.0	0.005	0.94	0.0	0.05	18.90	0.01	2.184	31.37	2.38	15.9	84.1	0.0	-6.09	2.23	0.34	0.61	3.33	2355	355	5	0	0	0	0	logfile
✔	7V4C	31707	2024-07-18	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.004	0.63	0.0	0.05	17.37	0.00	2.160	5.30	11.36	11.1	88.9	0.0	-4.89	1.13	0.39	0.82	3.35	1287	186	3	0	0	0	0	logfile
✔	6K9F	9948	2024-07-21	2019-06-15	3.7	7.50	4.15	7.2	0.002	0.45	0.0	0.03	11.87	0.00	2.356	5.29	0.00	0.0	100.0	0.0	-0.68	0.66	0.76	0.04	4.6	0.004	1.12	0.0	0.05	17.65	0.00	2.073	28.91	4.11	1.6	98.4	0.0	-0.15	3.85	0.68	0.84	0.73	8484	1044	12	0	0	0	0	logfile
✔	6HUD	0274	2024-07-18	2018-10-06	4.0	4.06	—	4.3	0.007	1.12	0.0	0.07	8.28	0.01	2.216	5.62	0.00	8.2	91.8	0.0	-5.06	0.59	0.76	—	4.3	0.005	0.81	0.0	0.05	13.17	0.00	2.162	23.03	1.82	8.8	91.2	0.0	-5.04	1.47	0.60	0.80	—	2905	385	5	0	0	0	0	logfile
✔	7KWZ	23059	2024-07-18	2020-12-02	3.2	3.41	—	3.4	0.006	0.80	0.0	0.05	12.48	0.00	2.271	14.29	0.00	7.3	92.7	0.0	-5.51	0.47	0.81	4.47	3.4	0.008	0.98	0.0	0.05	15.41	0.01	2.167	22.34	3.18	19.9	80.1	0.0	-5.58	0.99	0.48	0.85	4.46	4695	695	5	0	0	0	0	logfile
✔	6oFG	20045	2024-07-20	2019-03-29	2.9	3.01	—	3.0	0.008	0.75	0.0	0.04	10.04	0.01	2.263	5.31	0.00	3.9	96.1	0.0	-6.09	0.65	0.85	4.64	3.0	0.002	0.52	0.0	0.03	14.16	0.00	2.133	7.52	3.93	3.4	96.6	0.0	5.02	0.52	0.66	0.87	3.09	10980	1404	18	0	0	0	0	logfile
✔	8Cio	16683	2024-07-19	2023-02-10	3.5	3.28	3.48	3.8	0.002	0.55	0.0	0.05	11.52	0.00	2.418	8.03	0.00	8.9	91.1	0.0	-1.60	0.73	0.83	2.66	3.8	0.003	0.72	0.0	0.05	13.86	0.00	2.196	8.65	3.33	11.3	88.0	0.6	-1.88	0.50	0.72	0.84	2.69	5655	795	5	0	0	0	0	logfile

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