Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8GDZ	29951	2024-09-24	2023-03-06	3.5	3.86	3.64	3.8	0.003	0.51	0.0	0.04	12.96	0.00	2.270	6.85	0.00	1.2	98.8	0.0	1.42	0.68	0.82	2.65	3.8	0.003	0.50	0.0	0.04	14.78	0.00	2.534	4.31	2.51	0.8	99.2	0.0	1.53	0.30	0.68	0.82	2.21	6320	904	5	0	1	0	0	logfile
✔	8oTF	17177	2024-09-23	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.005	0.62	0.0	0.05	16.00	0.00	2.525	5.08	0.72	0.0	100.0	0.0	-1.06	0.45	0.43	0.90	5.83	1350	186	6	0	0	0	0	logfile
✔	8iYX	35832	2024-09-23	2023-04-06	3.34	3.71	3.03	3.6	0.007	0.86	0.0	0.05	15.49	0.00	2.252	12.03	4.08	3.5	96.1	0.4	0.98	0.48	0.81	1.56	3.7	0.003	0.71	0.0	0.04	16.59	0.00	2.512	8.69	2.86	3.9	96.1	0.0	2.86	1.38	0.49	0.84	1.20	2207	266	2	0	1	0	0	logfile
✔	8TZ3	41732	2024-09-30	2023-08-26	2.31	2.43	2.37	2.5	0.011	0.99	0.0	0.05	16.56	0.01	2.262	1.78	0.00	2.8	97.0	0.2	-3.08	0.62	0.80	5.16	2.5	0.004	0.59	0.0	0.04	16.66	0.00	2.101	2.76	1.19	2.1	97.9	0.0	2.83	0.56	0.62	0.81	4.07	24810	1599	9	0	18	15	12165	logfile
✔	8JTV	36653	2024-09-23	2023-06-22	3.77	4.24	3.67	4.2	0.006	0.66	0.0	0.04	12.16	0.01	2.293	8.08	0.36	4.2	95.8	0.0	0.62	0.51	0.62	0.67	4.2	0.003	0.68	0.0	0.04	15.06	0.00	2.639	9.10	2.89	4.9	95.1	0.0	1.14	0.37	0.50	0.65	0.67	3067	437	2	0	1	0	0	logfile
✔	8GEF	29968	2024-09-23	2023-03-06	3.8	4.05	3.84	4.0	0.014	0.96	0.0	0.04	13.65	0.00	2.302	7.38	1.42	1.2	98.8	0.0	2.13	0.71	0.80	2.52	4.0	0.002	0.45	0.0	0.04	13.52	0.00	2.608	5.25	2.36	1.2	98.8	0.0	2.37	1.09	0.71	0.79	2.15	6216	941	5	0	1	0	0	logfile
✔	8iJQ	35492	2024-09-26	2023-02-27	3.45	3.70	3.43	3.7	0.004	0.62	0.0	0.04	15.19	0.00	2.191	5.41	0.00	9.7	90.2	0.1	-1.63	0.63	0.80	2.05	3.7	0.005	0.88	1.0	0.04	16.20	0.00	2.038	6.46	2.49	10.8	89.2	0.0	-0.05	0.47	0.63	0.82	1.74	13380	1584	12	0	6	0	0	logfile
✔	8GEG	29969	2024-09-24	2023-03-06	3.8	4.13	3.89	4.0	0.003	0.58	0.0	0.04	12.03	0.00	2.221	8.37	0.00	2.2	97.8	0.0	1.48	0.71	0.79	2.69	4.0	0.003	0.57	0.0	0.04	14.17	0.00	2.507	8.20	3.69	2.1	97.9	0.0	1.74	1.13	0.72	0.80	2.02	6481	972	5	0	1	0	0	logfile
✔	8WM8	37645	2024-09-27	2023-10-03	3.54	3.92	3.62	3.9	0.002	0.58	0.0	0.04	14.85	0.00	1.963	8.64	0.00	7.3	92.7	0.0	-2.51	0.59	0.76	1.77	3.9	0.003	0.63	0.0	0.04	16.22	0.00	2.358	7.63	1.23	7.2	92.8	0.0	-1.95	0.39	0.56	0.73	1.52	16776	1055	5	0	1	0	8522	logfile
✔	8GE1	29952	2024-09-24	2023-03-06	3.4	3.78	3.54	3.8	0.003	0.51	0.0	0.04	12.49	0.00	2.203	5.64	0.00	2.2	97.8	0.0	1.67	0.71	0.85	3.09	3.8	0.003	0.51	0.0	0.04	14.17	0.00	2.571	4.82	2.36	2.0	98.0	0.0	2.05	0.29	0.67	0.83	2.23	6464	908	5	0	1	0	0	logfile
✔	8SML	40590	2024-09-30	2023-04-26	3.3	3.35	3.20	3.3	0.010	1.01	0.0	0.06	11.40	0.01	2.064	1.02	0.14	2.1	97.8	0.1	0.50	0.53	0.68	2.49	3.3	0.004	0.64	0.0	0.04	14.89	0.01	2.053	4.51	2.38	4.2	95.8	0.0	-0.72	1.30	0.55	0.72	3.07	24628	1594	8	0	6	0	12234	logfile
✔	8GEi	29971	2024-09-23	2023-03-06	4.1	4.35	4.10	4.2	0.003	0.54	0.0	0.04	10.59	0.00	2.226	4.55	0.00	3.1	96.9	0.0	1.03	0.71	0.79	—	4.2	0.004	0.55	0.0	0.04	9.18	0.00	2.603	5.01	0.00	3.8	96.2	0.0	0.91	1.13	0.71	0.80	—	5452	934	5	0	1	0	0	logfile
✔	8GEJ	29972	2024-09-23	2023-03-06	4.2	4.48	4.17	4.2	0.004	0.50	0.0	0.04	8.38	0.00	2.210	6.00	0.00	3.2	96.8	0.0	1.24	0.71	0.79	—	4.2	0.003	0.47	0.0	0.04	8.64	0.00	2.612	3.35	0.00	3.9	96.1	0.0	0.62	1.10	0.71	0.79	—	5436	950	5	0	1	0	0	logfile
✔	8JXV	36714	2024-09-24	2023-07-01	3.21	2.43	3.22	3.3	0.007	0.83	0.0	0.05	13.11	0.00	2.068	12.58	0.00	5.8	94.2	0.0	-0.75	0.70	0.69	1.54	3.3	0.003	0.65	0.0	0.04	14.73	0.00	2.470	7.49	1.45	4.3	95.7	0.0	0.47	0.35	0.71	0.71	1.07	7935	1040	6	0	1	0	0	logfile
✔	8WU1	37849	2024-09-24	2023-10-19	3.2	3.40	3.17	3.4	0.008	0.62	0.0	0.04	11.92	0.00	2.208	7.36	0.00	4.5	95.5	0.0	-0.58	0.66	0.79	3.60	3.4	0.002	0.59	0.0	0.04	13.94	0.00	2.582	6.36	1.30	2.2	97.8	0.0	0.29	0.36	0.65	0.78	3.10	7250	1014	5	0	1	0	0	logfile
✔	8GEL	29974	2024-09-27	2023-03-07	3.9	3.27	3.79	4.0	0.007	0.87	0.0	0.04	14.52	0.00	2.095	21.07	0.00	1.6	98.4	0.0	1.36	0.71	0.79	0.64	4.0	0.003	0.59	0.0	0.03	17.63	0.00	2.625	10.99	2.86	1.2	98.8	0.0	5.62	0.55	0.69	0.77	0.54	15556	1992	4	0	0	0	0	logfile
✔	8U8F	42023	2024-09-26	2023-09-17	3.49	3.84	3.55	3.9	0.003	0.54	0.0	0.04	15.46	0.01	2.124	7.60	0.13	2.5	97.4	0.1	1.41	0.59	0.68	1.19	3.9	0.002	0.55	0.0	0.04	16.16	0.00	2.336	5.81	2.28	3.4	96.6	0.0	0.77	1.78	0.60	0.74	1.68	13891	889	5	0	1	0	6925	logfile
✔	8VLX	43347	2024-09-29	2024-01-12	2.6	3.36	2.70	3.2	0.004	0.61	0.0	0.04	18.29	0.00	2.160	7.29	3.73	2.4	97.6	0.0	0.86	0.80	0.86	2.91	3.2	0.003	0.66	0.0	0.04	18.10	0.00	2.422	6.64	2.37	2.5	97.5	0.0	2.36	0.42	0.79	0.85	2.24	21239	2710	3	0	1	0	0	logfile
✔	8GE4	29955	2024-09-24	2023-03-06	3.3	3.62	3.40	3.6	0.003	0.45	0.0	0.04	12.45	0.00	2.248	5.38	0.00	2.0	98.0	0.0	1.63	0.70	0.85	3.35	3.6	0.003	0.49	0.0	0.04	14.49	0.00	2.606	5.38	2.54	2.1	97.9	0.0	1.66	0.28	0.71	0.85	2.77	6646	901	6	0	1	1	0	logfile
✘	9BKJ	44642	2024-09-24	2024-04-29	2.59	2.90	2.70	2.9	0.005	0.75	0.0	0.05	12.93	0.00	2.260	9.17	0.71	2.0	97.8	0.2	1.02	0.61	0.68	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	6795	891	6	0	1	0	0	logfile

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