Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Y1B	33559	2024-09-23	2022-06-08	3.23	3.55	3.34	3.5	0.006	0.64	0.0	0.05	14.26	0.01	2.340	4.92	0.00	9.8	90.2	0.0	-1.42	0.74	0.84	3.37	3.4	0.003	0.61	0.0	0.04	15.89	0.01	2.543	3.07	1.27	5.4	94.6	0.0	-0.13	0.90	0.71	0.85	3.27	4137	541	3	0	0	0	0	logfile
✔	7TB3	25791	2024-09-23	2021-12-21	2.57	3.30	—	3.1	0.002	0.41	0.0	0.03	9.42	0.00	2.212	4.32	1.06	9.5	90.1	0.4	0.76	0.74	0.74	1.78	3.0	0.003	0.66	0.0	0.04	15.00	0.00	2.364	6.37	1.65	2.7	97.3	0.0	3.01	0.96	0.74	0.85	2.08	48000	5832	24	0	0	0	0	logfile
✔	7XU3	33457	2024-09-23	2022-05-18	3.0	3.49	2.94	3.3	0.009	0.88	0.0	0.05	13.99	0.01	1.978	3.82	0.34	3.9	96.1	0.0	-1.43	0.82	0.82	2.61	3.2	0.003	0.57	0.0	0.04	14.23	0.00	2.347	4.55	0.46	3.8	96.2	0.0	-0.35	1.13	0.83	0.83	2.25	47057	3006	15	0	48	0	22838	logfile
✔	3JBS	6478	2024-09-23	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.64	0.0	0.04	18.35	0.00	2.655	5.51	3.95	1.7	98.3	0.0	0.93	1.82	0.21	0.81	3.78	1401	175	1	0	0	0	0	logfile
✔	7D4G	30573	2024-09-23	2020-09-23	3.9	4.13	—	4.1	0.006	1.06	1.0	0.06	9.87	0.01	1.917	36.47	0.00	10.7	88.9	0.4	-3.84	0.56	0.52	1.34	4.1	0.004	0.88	0.0	0.05	15.67	0.01	2.554	16.61	5.32	12.6	87.2	0.2	-2.01	3.65	0.66	0.71	1.53	3925	502	3	0	0	0	0	logfile
✔	7XQF	33394	2024-09-23	2022-05-07	2.3	2.69	2.25	2.6	0.005	1.09	0.0	0.04	17.01	0.00	1.942	3.87	0.56	1.6	98.4	0.0	3.06	0.68	0.87	4.51	2.6	0.002	0.52	0.0	0.03	14.77	0.00	2.474	3.45	1.16	2.2	97.8	0.0	3.15	1.04	0.65	0.87	4.41	43140	2412	36	0	168	492	19968	logfile
✔	7PQG	13593	2024-09-23	2021-09-21	3.7	4.20	—	4.0	0.004	0.88	0.0	0.05	12.56	0.01	2.204	28.36	0.28	7.4	92.6	0.0	-0.87	0.56	0.76	0.82	4.0	0.004	1.09	0.0	0.06	15.88	0.01	2.463	28.06	2.52	6.4	93.6	0.0	-1.24	1.21	0.56	0.77	0.82	3251	423	2	0	0	0	0	logfile
✔	8CSV	26972	2024-09-23	2022-05-13	2.7	2.53	2.72	2.6	0.002	0.47	0.0	0.04	11.85	0.00	2.246	2.73	1.03	2.7	97.1	0.2	0.82	0.53	0.85	5.33	2.6	0.002	0.48	0.0	0.04	15.88	0.00	2.546	4.37	2.33	3.3	96.5	0.2	2.38	0.57	0.56	0.87	4.60	3712	483	3	0	0	48	0	logfile
✔	6W7M	21571	2024-09-23	2020-03-19	3.8	3.72	—	3.6	0.002	0.58	0.0	0.03	23.74	0.00	2.031	14.77	0.10	7.4	92.3	0.3	-3.67	0.68	0.56	0.12	3.6	0.004	0.79	0.0	0.04	24.19	0.01	2.030	19.50	3.70	11.1	88.7	0.2	-2.68	1.34	0.71	0.61	0.50	50694	2319	20	1512	0	0	0	logfile
✔	6PZT	20537	2024-09-23	2019-08-01	3.46	3.91	3.76	3.8	0.007	0.75	0.0	0.05	11.59	0.00	2.026	16.50	0.43	12.3	87.7	0.0	-3.13	0.59	0.76	3.32	3.8	0.003	0.70	0.0	0.04	13.41	0.00	2.524	7.54	5.15	8.3	91.7	0.0	0.35	1.19	0.63	0.80	1.98	6062	932	2	0	0	0	0	logfile
✔	6XAS	22114	2024-09-23	2020-06-04	3.8	3.01	3.14	2.9	0.002	0.49	0.0	0.04	11.33	0.00	1.961	4.92	1.49	2.2	97.8	0.0	-2.00	0.62	0.55	1.72	3.0	0.003	0.63	0.0	0.04	15.07	0.00	1.910	6.85	1.67	3.7	96.3	0.0	-0.02	0.76	0.61	0.53	1.54	46887	5804	16	73	3	0	0	logfile
✔	8CGG	16642	2024-09-23	2023-02-04	2.5	2.67	2.48	2.7	0.011	1.67	0.0	0.08	16.62	0.01	2.637	6.41	0.00	11.5	88.5	0.0	-5.62	0.55	0.94	8.29	2.7	0.002	0.67	0.0	0.04	16.97	0.00	2.666	1.75	0.00	3.1	96.9	0.0	-4.74	0.95	0.51	0.91	7.42	2710	400	5	0	0	0	0	logfile
✔	7F63	31471	2024-09-23	2021-06-24	3.9	4.20	—	4.0	0.002	0.58	0.0	0.04	13.34	0.00	2.136	12.60	0.00	8.3	91.4	0.2	-2.31	0.63	0.62	1.27	4.0	0.004	0.86	0.0	0.05	16.24	0.00	2.372	15.79	2.96	12.4	87.2	0.5	-3.10	1.52	0.65	0.71	1.41	3375	429	3	0	0	0	0	logfile
✔	7K9i	22749	2024-09-23	2020-09-29	3.3	3.72	3.48	3.6	0.005	0.72	0.0	0.05	12.86	0.00	2.118	12.07	0.00	3.6	96.4	0.0	-0.86	0.55	0.82	3.38	3.6	0.003	0.72	0.0	0.04	14.95	0.00	2.545	8.20	3.38	3.6	96.4	0.0	-0.92	1.61	0.54	0.83	2.54	3295	423	4	0	1	0	0	logfile
✔	6RiU	4898	2024-09-23	2019-04-25	3.9	6.21	2.04	7.0	0.008	1.19	0.0	0.09	15.19	0.01	2.182	5.20	0.00	8.4	91.6	0.0	-5.77	0.59	0.69	0.56	7.1	0.002	0.65	0.0	0.03	16.40	0.00	2.434	10.05	1.97	5.6	94.4	0.0	-1.03	1.42	0.61	0.75	1.30	2882	182	2	0	0	0	1430	logfile
✘	6RJU	4906	2024-09-23	2019-04-29	3.2	4.49	2.14	10.0	0.007	0.93	0.0	0.05	15.36	0.00	2.423	4.52	0.00	11.6	88.4	0.0	-7.10	0.22	-0.01	-0.80	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1992	131	1	0	0	0	997	logfile
✔	7QTK	14143	2024-09-23	2022-01-14	3.84	4.13	—	4.0	0.004	0.73	1.0	0.05	13.16	0.00	2.182	9.44	0.54	4.9	95.0	0.2	-0.03	0.61	0.79	1.74	4.0	0.003	0.72	0.0	0.05	14.71	0.00	2.505	8.22	1.62	4.4	95.4	0.2	-0.47	0.56	0.62	0.79	1.84	5009	643	4	0	2	0	0	logfile
✔	7SLA	25196	2024-09-23	2021-10-23	3.15	3.74	—	3.7	0.009	1.01	2.0	0.07	13.72	0.01	2.210	3.63	1.74	6.8	93.2	0.0	-4.25	0.59	0.79	1.94	3.6	0.003	0.61	0.0	0.04	14.91	0.00	2.514	2.27	2.60	4.5	95.5	0.0	0.23	0.65	0.54	0.80	2.00	5458	702	3	0	1	0	0	logfile
✔	7T32	25648	2024-09-23	2021-12-06	3.4	3.96	—	3.9	0.006	0.77	0.0	0.04	14.07	0.01	2.313	6.67	0.00	5.1	94.6	0.3	1.86	0.44	0.76	0.75	3.9	0.003	0.70	0.0	0.04	16.07	0.00	2.509	8.27	3.17	3.8	96.0	0.3	2.46	1.25	0.44	0.79	0.65	2861	375	2	0	1	0	0	logfile
✘	7F62	31470	2024-09-23	2021-06-24	3.6	4.33	—	4.1	0.003	0.65	0.0	0.04	13.21	0.00	1.925	19.73	1.38	8.1	91.6	0.2	-2.76	0.66	0.62	0.54	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	3321	427	3	0	0	0	0	logfile

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