Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7D69	30591	2024-09-25	2020-09-29	3.57	3.34	—	3.6	0.009	0.88	0.0	0.05	28.86	0.01	2.062	19.76	0.00	5.2	94.8	0.0	-1.18	0.78	0.80	2.26	3.6	0.003	0.59	0.0	0.03	28.30	0.00	2.531	12.88	2.10	2.4	97.6	0.0	1.80	1.17	0.77	0.79	1.68	10857	727	10	250	0	0	0	logfile
✔	7WD8	32434	2024-09-23	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.71	0.0	0.04	12.43	0.00	2.558	10.69	0.00	4.5	95.3	0.2	-0.06	1.60	0.63	0.66	—	4029	524	4	0	0	0	0	logfile
✔	6F36	4176	2024-09-24	2017-11-28	3.7	2.63	—	3.9	0.010	1.13	0.0	0.07	11.06	0.01	2.304	7.63	0.27	5.1	94.9	0.0	-5.92	0.82	0.70	1.42	3.8	0.003	0.73	0.0	0.04	15.27	0.00	2.567	12.07	5.32	3.0	96.9	0.1	-0.09	0.87	0.83	0.73	1.11	7453	1039	12	0	0	0	0	logfile
✔	6SHS	10204	2024-09-24	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.68	0.00	2.416	3.63	0.00	15.4	84.6	0.0	-5.52	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	6R23	4708	2024-09-23	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.70	0.0	0.03	16.71	0.00	2.619	6.54	0.00	6.7	93.3	0.0	0.80	3.40	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✘	7BoX	30135	2024-09-28	2020-03-20	3.8	3.29	—	3.8	0.012	1.46	5.0	0.07	12.93	0.01	2.236	9.53	0.05	8.1	91.5	0.5	-4.94	0.78	0.81	2.90	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	18618	2334	12	0	0	0	0	logfile
✘	6V6B	21067	2024-09-25	2019-12-04	3.8	3.96	—	3.9	0.005	0.55	0.0	0.04	14.36	0.00	2.211	5.33	0.00	5.1	94.9	0.0	-5.29	0.54	0.84	1.85	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9115	1111	2	0	0	0	0	logfile
✔	9G2U	50984	2024-09-23	2024-07-11	3.45	4.13	3.43	3.8	0.011	1.37	0.0	0.10	12.82	0.02	2.127	9.87	0.26	1.3	98.7	0.0	1.40	0.67	0.77	0.82	3.8	0.003	0.51	0.0	0.03	16.06	0.00	2.565	6.99	1.80	0.4	99.6	0.0	6.36	4.28	0.71	0.83	0.58	3634	456	2	0	0	0	0	logfile
✔	6oUT	20205	2024-09-25	2019-05-05	2.6	2.84	—	2.9	0.007	0.93	0.0	0.06	12.60	0.01	2.099	6.06	0.00	4.8	95.2	0.0	-2.10	0.75	0.86	4.03	2.9	0.003	0.61	0.0	0.05	15.10	0.01	2.548	4.90	1.82	3.2	96.8	0.0	-0.07	0.40	0.76	0.88	3.25	11505	1494	6	0	0	226	0	logfile
✔	5LiJ	4054	2024-09-23	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.11	0.0	0.04	9.68	0.00	2.554	11.83	0.00	32.7	67.3	0.0	-5.72	0.60	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✘	6V3E	21034	2024-09-24	2019-11-25	4.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50850	2311	20	1528	0	0	0	logfile
✔	7LYS	23600	2024-09-26	2021-03-08	3.05	2.55	3.08	3.1	0.003	0.54	0.0	0.04	20.02	0.00	1.976	5.82	0.17	0.0	100.0	0.0	-1.46	0.83	0.83	2.05	3.1	0.003	0.56	0.0	0.04	20.50	0.00	2.434	4.35	0.87	3.2	96.8	0.0	0.93	0.36	0.83	0.84	2.15	13573	669	4	89	0	0	6374	logfile
✔	7JV2	22491	2024-09-23	2020-08-20	3.5	3.49	3.41	3.7	0.015	1.39	0.0	0.08	11.43	0.01	2.587	0.00	1.32	3.6	96.4	0.0	0.82	0.69	0.74	3.48	3.7	0.003	0.72	0.0	0.04	14.72	0.00	2.557	12.37	3.08	4.4	95.6	0.0	-0.84	1.29	0.71	0.76	3.91	2151	282	3	0	0	0	0	logfile
✔	7CXR	30495	2024-09-23	2020-09-02	3.4	3.32	3.43	3.7	0.007	0.87	1.0	0.06	16.56	0.00	2.199	12.99	3.39	6.6	93.1	0.3	-2.27	0.52	0.54	1.33	3.6	0.004	0.74	0.0	0.04	18.31	0.00	2.557	9.89	3.21	3.3	96.7	0.0	1.86	1.52	0.59	0.62	1.41	5168	614	2	0	0	0	0	logfile
✔	5Lii	4053	2024-09-23	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.9	0.003	0.87	0.0	0.04	16.25	0.01	2.527	10.46	6.01	13.9	85.4	0.7	-3.95	0.80	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	7XY1	33507	2024-09-25	2022-05-31	3.3	3.36	—	3.3	0.005	0.76	6.0	0.06	13.22	0.01	2.035	16.43	0.97	8.4	91.0	0.6	-2.22	0.76	0.83	3.69	3.3	0.003	0.63	0.0	0.05	15.08	0.00	2.474	8.33	1.62	9.3	90.5	0.2	-2.43	0.33	0.78	0.85	2.94	11550	1536	3	0	0	0	0	logfile
✔	7WLC	32581	2024-09-23	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.1	0.004	0.82	0.0	0.05	16.16	0.00	2.515	15.16	2.79	6.8	93.2	0.0	-1.46	0.51	0.72	0.78	—	3307	430	3	0	0	0	0	logfile
✔	6oWT	20217	2024-09-26	2019-05-10	3.8	4.08	—	4.0	0.003	0.61	0.0	0.04	12.40	0.01	2.304	4.41	2.31	4.4	95.6	0.0	-3.98	0.77	0.76	1.52	4.0	0.003	0.68	0.0	0.04	15.33	0.00	2.514	9.66	2.67	4.2	95.8	0.0	0.36	0.67	0.78	0.76	0.99	11649	1575	6	0	0	0	0	logfile
✔	3J9E	6240	2024-09-23	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.74	0.0	0.04	17.95	0.00	2.522	8.15	3.89	7.6	91.5	1.0	0.82	1.24	0.74	0.85	2.95	4098	520	1	0	0	0	0	logfile
✔	7SF7	25076	2024-09-24	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.1	0.003	0.62	0.0	0.04	15.62	0.00	2.499	5.08	2.68	6.8	93.2	0.0	-1.00	0.50	0.77	0.78	1.49	6776	879	5	0	0	3	0	logfile

• Page 1 of 538
• next →