Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Z03	14403	2024-09-27	2022-02-21	3.7	4.81	3.71	4.4	0.004	0.70	0.0	0.04	18.98	0.00	1.498	7.19	0.08	3.2	96.8	0.0	0.79	0.77	0.64	1.19	4.4	0.004	0.94	0.0	0.05	20.74	0.00	1.867	20.12	3.45	3.5	96.5	0.0	0.00	1.11	0.82	0.81	0.79	13396	1497	10	78	8	0	0	logfile
✔	7WSW	32769	2024-09-27	2022-02-02	3.4	3.86	—	3.7	0.003	0.55	0.0	0.04	13.26	0.00	2.149	6.77	0.00	5.5	94.5	0.0	0.70	0.64	0.84	2.21	3.7	0.003	0.53	0.0	0.04	14.55	0.00	2.403	5.30	0.76	6.0	94.0	0.0	1.09	1.12	0.65	0.85	1.80	15051	1868	8	0	7	0	0	logfile
✔	7LF6	23300	2024-09-24	2021-01-15	3.5	2.65	—	3.0	0.003	0.71	0.0	0.05	13.86	0.01	2.032	17.06	0.00	3.2	96.8	0.0	1.00	0.71	0.71	1.64	3.0	0.004	0.73	0.0	0.04	17.56	0.00	2.551	14.62	5.74	3.9	96.1	0.0	0.87	0.52	0.71	0.72	1.20	6288	814	2	0	0	0	0	logfile
✔	8i1V	35123	2024-09-29	2023-01-13	2.6	3.00	2.59	3.0	0.005	0.62	0.0	0.04	13.20	0.00	2.058	7.77	0.04	3.2	96.8	0.0	-0.33	0.60	0.81	3.39	3.0	0.004	0.60	0.0	0.04	14.94	0.00	2.055	6.62	1.57	3.0	97.0	0.0	-0.05	0.54	0.61	0.89	3.12	23870	3127	14	0	0	0	0	logfile
✔	8QEY	18379	2024-09-24	2023-09-01	4.0	4.20	4.03	4.1	0.005	0.96	0.0	0.05	19.80	0.01	2.258	7.47	0.91	6.8	93.2	0.0	-1.09	0.64	0.76	—	4.1	0.003	0.74	0.0	0.04	17.91	0.00	2.507	9.26	5.35	5.8	94.2	0.0	0.59	0.39	0.65	0.77	—	7306	918	7	0	9	0	0	logfile
✔	7MD2	23763	2024-09-27	2021-04-03	3.1	2.24	3.15	2.2	0.009	0.80	0.0	0.05	14.28	0.00	1.726	3.12	0.25	1.8	98.0	0.2	-1.87	0.73	0.76	3.86	2.9	0.005	0.75	0.0	0.04	16.21	0.00	1.761	6.23	1.66	3.1	96.7	0.2	0.07	1.24	0.74	0.79	3.50	47119	3115	13	0	8	0	23645	logfile
✔	6PLQ	20372	2024-09-26	2019-07-01	3.4	4.30	—	4.3	0.002	0.53	0.0	0.05	11.13	0.00	2.031	5.97	0.00	2.0	98.0	0.0	-4.40	0.57	0.36	0.62	3.9	0.004	0.98	0.0	0.05	14.61	0.00	2.398	12.21	1.35	5.0	95.0	0.0	-1.29	2.86	0.73	0.78	1.10	14240	1730	15	0	20	0	0	logfile
✔	8E40	27875	2024-09-25	2022-08-17	3.57	4.33	3.57	3.7	0.005	0.93	0.0	0.05	19.34	0.01	2.225	18.73	2.12	5.9	93.9	0.2	-2.84	0.75	0.62	1.01	3.8	0.003	0.68	0.0	0.04	19.30	0.00	2.000	14.03	3.54	4.3	95.7	0.0	-0.65	1.79	0.87	0.76	0.97	6297	636	6	47	2	0	0	logfile
✔	7T96	25752	2024-09-26	2021-12-18	3.22	2.43	—	2.2	0.008	0.94	3.0	0.06	12.64	0.00	2.091	11.18	0.35	7.3	92.7	0.0	-0.99	0.77	0.77	2.54	2.2	0.004	0.72	0.0	0.04	15.27	0.00	2.419	7.13	3.69	5.4	94.6	0.0	-0.06	0.96	0.79	0.81	1.82	8450	1122	6	0	2	0	0	logfile
✔	8FF3	29037	2024-09-23	2022-12-07	3.09	2.31	2.69	3.2	0.002	0.43	0.0	0.06	8.70	0.00	2.616	1.83	0.00	0.0	100.0	0.0	-2.15	0.40	0.67	4.94	3.2	0.002	0.51	0.0	0.06	11.60	0.00	2.568	4.58	0.00	0.7	99.3	0.0	-2.04	0.53	0.35	0.72	3.73	2190	150	6	0	0	0	1122	logfile
✔	7V7o	31776	2024-09-30	2021-08-21	2.9	3.72	—	3.2	0.007	0.69	0.0	0.05	14.12	0.00	2.158	7.07	0.00	5.5	94.4	0.1	-0.05	0.89	0.88	2.42	3.2	0.006	0.64	0.0	0.05	14.24	0.00	2.455	5.21	0.78	5.0	94.9	0.1	0.16	0.27	0.89	0.87	2.09	25325	3092	41	0	83	0	0	logfile
✔	7RE0	24429	2024-09-29	2021-07-12	3.5	4.17	—	3.8	0.009	0.88	1.0	0.05	16.13	0.01	1.129	13.09	9.24	6.7	93.1	0.2	-1.80	0.83	0.74	2.06	3.8	0.003	0.66	0.0	0.04	16.11	0.00	1.937	9.40	2.00	4.4	95.6	0.0	-0.05	2.00	0.87	0.83	1.41	21577	2553	11	71	16	0	0	logfile
✘	7VX1	32167	2024-09-30	2021-11-12	3.5	2.44	—	3.4	0.002	0.49	1.0	0.04	7.46	0.00	1.753	8.22	0.00	4.3	95.7	0.1	-2.11	0.63	0.59	1.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25362	3237	3	0	0	0	0	logfile
✔	7V7N	31775	2024-09-30	2021-08-21	2.9	3.77	—	3.2	0.005	0.62	0.0	0.05	13.98	0.00	2.171	6.62	0.00	5.4	94.4	0.1	0.11	0.89	0.87	2.63	3.3	0.004	0.60	0.0	0.05	14.20	0.00	2.435	5.60	1.29	4.9	94.9	0.1	0.22	0.26	0.89	0.88	2.09	25430	3101	42	0	85	0	0	logfile
✔	7S9U	24937	2024-09-27	2021-09-21	3.2	3.94	—	3.1	0.011	0.96	0.0	0.06	24.72	0.01	1.016	12.03	1.90	15.2	84.3	0.4	-5.38	0.66	0.63	2.37	3.1	0.003	0.60	0.0	0.03	24.12	0.00	2.109	6.15	2.24	6.4	93.5	0.1	-2.21	0.95	0.89	0.90	1.73	68620	2090	19	2436	0	0	0	logfile
✘	8HiJ	34818	2024-09-24	2022-11-20	3.54	2.56	3.51	3.0	0.005	0.76	1.0	0.05	9.66	0.01	2.315	3.83	0.00	5.2	94.8	0.0	-3.81	0.69	0.69	2.24	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	8245	1055	5	0	1	0	0	logfile
✔	7W0L	32243	2024-09-27	2021-11-18	3.57	2.46	3.66	2.2	0.010	0.94	0.0	0.05	15.21	0.00	1.891	13.94	0.08	8.6	91.3	0.1	-3.27	0.76	0.78	2.29	2.2	0.004	0.71	0.0	0.04	16.76	0.00	2.444	8.48	2.72	6.2	93.7	0.1	-0.63	0.46	0.75	0.77	2.18	11526	1455	8	0	2	0	0	logfile
✘	7L8Y	23240	2024-09-27	2021-01-01	4.2	4.30	4.00	4.2	0.021	1.67	1.0	0.14	11.27	0.02	2.188	2.09	0.00	2.4	97.6	0.0	1.02	0.71	0.81	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15903	1739	27	0	292	0	0	logfile
✔	7Z8L	14556	2024-09-27	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	9.68	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.004	0.63	0.0	0.04	6.87	0.00	1.809	2.27	0.00	5.1	94.9	0.0	1.52	0.68	0.81	0.84	—	16513	3311	3	0	5	0	0	logfile
✔	7XJG	33226	2024-09-26	2022-04-17	2.51	2.02	2.63	1.6	0.005	0.71	0.0	0.05	24.50	0.01	1.962	7.64	3.44	4.1	95.9	0.0	-0.23	0.76	0.76	2.80	1.6	0.004	0.60	0.0	0.04	23.93	0.00	2.482	5.56	3.55	3.7	96.3	0.0	0.51	0.89	0.79	0.80	2.56	13167	1066	12	216	2	0	0	logfile

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