Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8EPQ	28533	2024-09-30	2022-10-06	3.3	3.96	3.41	3.0	0.004	0.68	0.0	0.05	14.31	0.00	2.117	7.20	0.12	3.2	96.8	0.0	0.04	0.85	0.83	2.38	3.0	0.006	0.70	0.0	0.05	13.81	0.00	2.432	6.72	1.42	5.5	94.5	0.0	-0.04	0.43	0.86	0.85	2.12	24287	2984	21	0	66	0	0	logfile
✔	8Do6	27593	2024-09-26	2022-07-12	3.1	3.31	3.16	3.3	0.005	0.68	0.0	0.04	18.00	0.00	2.146	16.58	0.62	6.3	93.2	0.4	-1.21	0.69	0.77	1.74	3.3	0.006	1.04	2.0	0.05	18.81	0.00	1.968	17.49	2.26	6.5	93.2	0.4	-0.95	0.41	0.68	0.77	1.65	12980	1450	9	61	0	0	0	logfile
✔	8J1A	35915	2024-09-24	2023-04-12	3.24	3.58	3.34	3.6	0.004	0.62	0.0	0.04	15.32	0.00	1.976	5.61	0.63	3.8	96.2	0.0	0.36	0.61	0.82	2.87	3.6	0.003	0.56	0.0	0.04	16.04	0.00	2.527	5.10	1.99	3.2	96.8	0.0	0.38	0.39	0.56	0.81	2.69	8845	1137	5	0	0	0	0	logfile
✔	8EPP	28532	2024-09-30	2022-10-06	3.1	3.64	3.26	2.9	0.004	0.59	0.0	0.05	16.17	0.00	2.217	7.58	0.35	3.6	96.2	0.1	0.11	0.84	0.84	2.03	2.9	0.003	0.57	0.0	0.05	14.71	0.00	2.348	6.18	2.30	4.1	95.8	0.1	0.20	0.38	0.85	0.84	1.91	23913	2939	21	0	66	0	0	logfile
✔	8J18	35913	2024-09-24	2023-04-12	2.89	3.40	3.16	3.3	0.004	0.71	0.0	0.05	15.96	0.00	2.181	6.45	1.26	4.0	96.0	0.0	-0.18	0.56	0.78	3.08	3.3	0.003	0.66	0.0	0.04	16.59	0.00	2.477	8.20	2.52	4.0	95.9	0.1	0.21	0.57	0.56	0.79	2.74	8860	1137	6	0	1	0	0	logfile
✔	8JAJ	36127	2024-09-23	2023-05-06	3.9	4.09	3.79	3.8	0.002	0.51	0.0	0.04	12.66	0.00	2.064	6.03	0.00	3.2	96.6	0.2	0.70	0.52	0.74	0.61	3.8	0.003	0.62	0.0	0.04	14.96	0.00	2.549	6.22	1.37	4.4	95.1	0.5	-0.06	0.95	0.55	0.86	1.41	47664	6312	12	0	0	0	0	logfile
✔	8oUY	17205	2024-09-27	2023-04-25	3.4	2.97	3.46	3.3	0.002	0.52	0.0	0.04	17.65	0.00	1.811	4.62	0.00	4.5	95.5	0.0	-0.78	0.71	0.78	2.26	3.3	0.004	0.56	0.0	0.04	17.38	0.00	1.718	4.01	1.74	5.8	94.2	0.0	-0.50	1.14	0.71	0.78	2.14	14695	925	7	0	6	0	7380	logfile
✔	8JKB	36367	2024-09-27	2023-06-01	3.27	4.57	3.29	3.9	0.004	0.67	0.0	0.05	13.37	0.00	2.142	8.50	0.16	4.0	96.0	0.0	-1.95	0.84	0.71	2.10	4.0	0.004	0.88	0.0	0.04	15.55	0.00	2.455	11.12	1.82	4.2	95.8	0.0	-1.57	0.92	0.90	0.85	2.00	17169	2220	15	0	0	0	0	logfile
✔	8JAN	36130	2024-09-29	2023-05-06	3.3	3.48	3.09	3.4	0.003	0.53	0.0	0.04	12.83	0.00	2.199	4.25	0.00	4.2	95.8	0.0	-0.26	0.72	0.89	3.06	3.4	0.003	0.53	2.0	0.04	14.37	0.00	2.326	3.42	0.64	4.0	96.0	0.0	-0.44	0.23	0.73	0.91	2.77	75114	9834	30	0	0	0	0	logfile
✔	8JCY	36169	2024-09-25	2023-05-12	2.9	3.07	2.88	3.1	0.003	0.53	0.0	0.17	12.99	0.00	2.200	6.04	0.00	4.2	95.8	0.0	0.76	0.64	0.71	2.52	3.1	0.003	0.57	0.0	0.04	13.24	0.00	2.187	4.78	2.18	4.5	95.5	0.0	0.62	0.37	0.68	0.78	2.31	10874	1525	4	0	11	0	0	logfile
✘	8JMM	36423	2024-09-28	2023-06-05	3.75	8.01	3.82	3.2	0.002	0.50	0.0	0.04	8.68	0.00	2.196	6.60	3.80	3.7	96.3	0.0	-3.47	0.68	0.41	0.21	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	70631	9100	18	0	0	0	0	logfile
✔	8iPT	35643	2024-09-28	2023-03-14	3.5	3.89	3.56	3.8	0.003	0.67	0.0	0.04	18.35	0.00	2.200	9.84	0.32	8.0	91.9	0.2	-0.06	0.73	0.80	1.33	3.8	0.003	0.65	0.0	0.04	18.43	0.00	2.213	6.21	3.02	8.7	91.2	0.1	0.32	0.64	0.73	0.82	1.59	18178	2322	8	0	4	0	0	logfile
✔	8JCW	36167	2024-09-25	2023-05-12	3.0	3.17	2.95	3.1	0.003	0.61	0.0	0.17	13.68	0.00	2.218	5.90	0.22	5.5	94.5	0.0	0.47	0.69	0.77	1.98	3.1	0.005	0.68	0.0	0.04	14.26	0.01	2.513	6.80	3.70	7.1	92.9	0.0	0.17	1.15	0.72	0.85	2.72	10760	1527	4	0	6	0	0	logfile
✔	8G8Y	29858	2024-09-26	2023-02-20	3.8	3.46	4.04	3.4	0.003	0.57	0.0	0.04	16.78	0.00	2.142	5.66	0.72	1.2	98.8	0.0	2.57	0.52	0.86	2.49	3.4	0.003	0.59	0.0	0.04	16.84	0.00	2.307	5.29	3.09	1.0	99.0	0.0	3.06	0.41	0.53	0.86	2.50	13717	1715	12	0	0	0	0	logfile
✔	8ioE	35617	2024-09-29	2023-03-11	2.86	3.66	2.96	3.4	0.004	0.49	0.0	0.04	10.43	0.00	2.048	8.82	0.78	3.4	96.6	0.0	0.02	0.87	0.85	4.01	3.3	0.002	0.58	0.0	0.04	12.20	0.00	2.027	7.78	0.88	3.2	96.8	0.0	1.02	0.37	0.86	0.84	3.12	75404	9454	24	0	24	0	0	logfile
✔	8G4C	29716	2024-09-27	2023-02-09	3.1	3.36	3.19	3.4	0.004	0.59	0.0	0.04	16.59	0.00	2.236	6.06	0.25	4.4	95.6	0.0	0.73	0.62	0.77	2.20	3.4	0.002	0.46	0.0	0.04	17.05	0.00	2.550	4.19	1.34	3.8	96.1	0.1	1.32	0.26	0.65	0.84	2.04	14503	1803	8	0	3	0	0	logfile
✔	8JD0	36171	2024-09-25	2023-05-12	3.3	3.56	3.24	3.5	0.004	0.49	0.0	0.04	13.56	0.00	2.278	5.98	0.10	4.3	95.7	0.0	0.18	0.66	0.69	1.55	3.5	0.003	0.57	0.0	0.04	14.06	0.00	2.449	7.42	2.59	5.4	94.6	0.0	-0.24	0.37	0.71	0.78	2.06	11264	1532	5	0	12	0	0	logfile
✔	8QHS	18416	2024-09-23	2023-09-10	2.3	2.47	2.33	2.4	0.006	0.68	0.0	0.05	17.61	0.00	2.089	5.84	6.56	1.3	98.7	0.0	-0.18	0.40	0.89	6.91	2.4	0.004	0.50	0.0	0.04	17.28	0.00	2.515	5.07	1.15	1.2	98.8	0.0	1.17	0.37	0.40	0.90	6.47	6212	785	10	0	0	337	0	logfile
✔	8DVi	27739	2024-09-29	2022-07-29	3.2	2.70	3.23	3.1	0.004	0.68	0.0	0.05	12.49	0.00	1.856	10.77	1.78	4.9	95.1	0.0	0.23	0.65	0.78	2.56	2.7	0.003	0.63	0.0	0.04	16.69	0.00	1.925	9.01	2.50	5.0	95.0	0.0	0.43	0.81	0.67	0.82	2.34	23693	2914	14	17	10	0	0	logfile
✔	8JCV	36166	2024-09-25	2023-05-12	3.4	3.66	3.32	3.6	0.003	0.56	0.0	0.19	14.87	0.00	2.300	7.05	0.11	4.5	95.5	0.0	1.15	0.67	0.72	1.48	3.6	0.004	0.61	0.0	0.04	14.69	0.00	2.502	7.30	1.61	5.2	94.8	0.0	0.81	0.50	0.69	0.79	1.64	10667	1514	4	0	4	0	0	logfile

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