Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M74	23708	2024-09-26	2021-03-26	3.93	4.17	—	3.1	0.004	0.74	0.0	0.05	9.73	0.01	1.330	3.92	0.00	3.0	97.0	0.0	-3.25	0.91	0.78	1.54	3.1	0.002	0.68	0.0	0.04	12.89	0.00	2.498	9.36	0.96	3.0	97.0	0.0	-0.20	1.32	0.92	0.83	1.87	13457	1699	10	0	6	0	0	logfile
✔	7Si7	25139	2024-09-25	2021-10-12	3.49	3.47	—	3.4	0.003	1.32	0.0	0.04	13.13	0.00	1.963	5.23	0.00	2.6	97.4	0.0	2.38	0.49	0.78	0.67	3.4	0.002	0.91	0.0	0.04	15.05	0.00	2.094	3.63	0.66	2.6	97.4	0.0	2.78	1.00	0.51	0.82	0.51	11287	728	2	0	2	0	5777	logfile
✔	7Z0Z	14435	2024-09-24	2022-02-24	2.68	2.92	2.79	2.8	0.006	0.72	6.0	0.05	14.67	0.00	2.092	7.37	0.54	1.9	98.0	0.2	0.45	0.74	0.86	4.83	2.8	0.002	0.46	0.0	0.04	16.61	0.00	2.559	4.70	1.03	2.0	97.9	0.2	1.36	0.93	0.76	0.89	4.16	29466	3510	6	0	0	0	0	logfile
✔	5oH0	3809	2024-09-24	2017-07-13	4.2	4.36	—	4.3	0.003	0.75	0.0	0.05	8.94	0.00	2.029	3.32	0.00	1.9	98.1	0.0	-3.74	0.64	0.84	—	4.2	0.002	0.51	0.0	0.04	10.69	0.00	2.618	4.01	0.00	1.1	98.9	0.0	-1.82	0.63	0.64	0.86	—	6588	942	6	0	0	0	0	logfile
✔	7FCE	31525	2024-09-30	2021-07-14	3.1	3.19	—	3.1	0.010	0.98	0.0	0.07	12.93	0.01	2.343	1.98	0.99	4.6	95.3	0.2	-0.85	0.73	0.74	1.96	3.1	0.002	0.58	0.0	0.04	14.19	0.00	2.518	3.16	0.91	3.2	96.8	0.0	0.13	1.41	0.82	0.88	2.98	25542	3125	33	0	78	0	0	logfile
✔	6J9E	9785	2024-09-30	2019-01-22	3.41	3.55	3.48	3.5	0.003	0.61	0.0	0.04	14.74	0.01	2.198	2.44	0.05	3.0	97.0	0.0	-3.74	0.76	0.79	1.49	3.5	0.002	0.59	0.0	0.04	16.98	0.00	2.132	4.78	2.35	2.9	97.1	0.0	0.22	0.61	0.79	0.83	1.55	24427	3203	11	63	3	0	0	logfile
✔	7YFi	33791	2024-09-30	2022-07-08	3.3	3.42	3.48	3.3	0.004	0.70	0.0	0.05	17.74	0.01	2.097	8.86	1.20	6.1	93.5	0.4	-0.21	0.84	0.77	1.68	3.0	0.002	0.58	0.0	0.04	16.85	0.00	2.497	6.82	2.21	5.9	93.9	0.2	0.28	1.35	0.87	0.83	2.15	24135	2980	19	0	45	0	0	logfile
✔	6R4P	4722	2024-09-24	2019-03-22	3.1	3.45	—	3.2	0.008	1.04	0.0	0.06	11.94	0.01	2.080	4.30	0.57	6.2	93.8	0.0	-3.18	0.83	0.86	4.07	3.2	0.002	0.59	0.0	0.04	14.60	0.00	2.084	6.53	1.13	3.7	96.3	0.0	0.69	1.54	0.83	0.87	2.91	6583	819	3	0	2	0	0	logfile
✔	7MiL	23855	2024-09-29	2021-04-17	3.86	3.21	—	3.2	0.007	1.17	0.0	0.05	13.07	0.01	2.304	2.86	0.68	4.4	95.4	0.2	-5.90	0.75	0.77	2.34	3.2	0.002	0.64	0.0	0.04	16.06	0.00	2.455	5.55	2.04	3.7	96.3	0.0	-0.79	1.50	0.75	0.77	1.61	21753	2624	8	0	9	0	0	logfile
✔	7MiK	23854	2024-09-29	2021-04-17	3.12	3.08	—	3.2	0.010	1.47	0.0	0.05	20.36	0.01	2.170	4.32	0.53	4.1	95.9	0.0	-6.20	0.68	0.82	4.22	3.2	0.002	0.58	0.0	0.04	17.13	0.00	2.185	4.85	0.79	4.0	96.0	0.0	0.41	1.06	0.72	0.86	2.35	22728	2560	8	0	40	0	0	logfile
✔	7DTW	30856	2024-09-25	2021-01-06	4.5	4.74	—	3.6	0.008	1.01	0.0	0.06	13.83	0.01	2.267	9.20	0.00	10.3	89.7	0.0	-4.26	0.71	0.78	—	3.7	0.002	0.61	0.0	0.04	12.47	0.00	2.030	6.44	0.00	7.8	92.2	0.0	-1.18	0.59	0.72	0.79	—	10250	1556	8	0	14	0	0	logfile
✔	7WUG	32830	2024-09-27	2022-02-08	3.3	3.43	—	3.4	0.004	0.69	0.0	0.05	13.45	0.00	2.231	3.19	0.11	4.1	95.8	0.0	-0.52	0.79	0.86	2.55	3.4	0.002	0.50	0.0	0.04	15.03	0.00	2.523	4.03	0.97	3.1	96.9	0.0	1.49	0.29	0.79	0.88	2.01	17515	2239	5	0	0	0	0	logfile
✔	7PLS	13499	2024-09-26	2021-09-01	2.49	2.49	—	2.6	0.003	0.58	0.0	0.05	16.35	0.00	2.039	4.66	1.33	5.6	94.4	0.0	0.35	0.74	0.86	5.65	2.6	0.002	0.53	0.0	0.04	16.24	0.00	2.590	3.75	0.67	5.4	94.6	0.0	0.44	0.95	0.76	0.88	5.18	14224	1724	12	0	4	52	0	logfile
✔	7Si6	25138	2024-09-26	2021-10-12	3.32	3.28	—	3.3	0.003	1.22	0.0	0.04	13.58	0.00	2.044	4.51	0.00	1.4	98.6	0.0	2.88	0.46	0.77	1.67	3.3	0.002	0.85	0.0	0.04	15.00	0.00	1.922	3.03	0.69	2.3	97.7	0.0	2.65	0.41	0.50	0.82	1.77	13515	873	2	0	2	0	6910	logfile
✔	8DJB	27459	2024-09-27	2022-06-30	3.18	3.51	3.10	3.3	0.005	0.72	0.0	0.06	12.90	0.00	1.908	12.93	6.96	4.2	95.6	0.2	-0.69	0.82	0.81	1.93	3.3	0.002	0.62	0.0	0.04	15.45	0.00	2.536	6.17	1.36	3.2	96.8	0.0	0.95	1.05	0.87	0.90	2.00	16781	2156	9	0	1	0	0	logfile
✔	7V1Y	31630	2024-09-26	2021-08-07	2.82	2.93	—	2.9	0.006	0.78	8.0	0.06	13.04	0.00	2.254	2.36	0.15	2.9	97.1	0.0	1.48	0.69	0.86	3.24	2.9	0.002	0.55	4.0	0.04	16.14	0.00	2.358	3.44	1.42	3.8	96.2	0.0	1.72	0.56	0.68	0.88	3.09	12524	1588	8	0	0	0	0	logfile
✔	8KB4	37069	2024-09-23	2023-08-03	3.1	3.80	3.15	3.6	0.004	0.70	0.0	0.04	19.10	0.00	2.151	19.36	0.00	6.1	93.9	0.0	1.68	0.65	0.85	2.49	3.6	0.002	0.57	0.0	0.04	16.19	0.00	2.545	3.84	0.84	4.5	95.5	0.0	2.14	1.25	0.64	0.84	2.08	3367	402	2	0	4	0	0	logfile
✔	7MiM	23856	2024-09-29	2021-04-17	3.42	3.40	—	3.4	0.010	1.37	0.0	0.05	19.54	0.01	2.031	3.40	0.00	5.3	94.6	0.2	-5.95	0.61	0.79	3.00	3.5	0.002	0.58	0.0	0.04	16.74	0.00	2.586	4.51	0.74	3.4	96.6	0.0	0.76	1.67	0.64	0.83	2.11	22728	2560	8	0	40	0	0	logfile
✔	7K11	22620	2024-09-25	2020-09-06	3.21	3.34	—	3.3	0.005	0.92	0.0	0.05	15.33	0.01	2.271	4.65	0.46	9.6	90.3	0.1	-5.00	0.69	0.76	1.74	3.3	0.002	0.62	0.0	0.04	16.77	0.00	2.503	5.05	2.01	8.1	91.9	0.0	-0.87	1.23	0.70	0.77	1.18	10011	1254	1	0	0	0	0	logfile
✔	7KPW	22990	2024-09-23	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.002	0.67	0.0	0.04	4.82	0.00	2.474	0.66	0.00	9.6	89.8	0.6	0.64	2.03	0.82	0.81	—	4313	865	1	0	0	0	0	logfile

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