Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6CU8	7619	2024-09-23	2018-03-23	3.6	3.65	—	4.2	0.004	0.73	0.0	0.06	7.75	0.00	2.412	6.41	0.00	5.1	94.9	0.0	-2.86	0.45	0.73	-0.16	4.3	0.004	0.78	0.0	0.05	12.31	0.00	2.516	12.31	4.84	9.7	90.3	0.0	-2.78	1.75	0.41	0.73	2.35	2880	410	10	0	0	0	0	logfile
✔	8A7o	15222	2024-09-23	2022-06-21	3.0	3.15	2.97	3.0	0.002	0.55	0.0	0.04	11.28	0.00	2.029	6.71	0.00	2.9	97.1	0.0	-3.59	0.50	0.88	5.55	2.9	0.005	0.69	0.0	0.05	14.58	0.00	2.492	4.59	1.61	7.9	92.1	0.0	-3.61	1.40	0.49	0.91	5.09	4362	528	6	0	0	0	0	logfile
✔	7QK1	14028	2024-09-23	2021-12-17	3.03	3.20	2.13	3.2	0.011	1.97	2.0	0.11	12.98	0.01	2.502	0.00	0.00	5.5	94.5	0.0	-1.61	0.48	0.84	4.10	3.2	0.004	0.74	0.0	0.05	16.46	0.00	2.588	3.70	3.28	3.0	97.0	0.0	-1.65	2.23	0.42	0.84	4.21	3444	450	6	0	0	0	0	logfile
✔	6oSL	20185	2024-09-23	2019-05-01	3.0	3.04	—	3.0	0.010	1.06	0.0	0.07	13.47	0.00	2.308	12.61	2.44	12.3	87.7	0.0	-4.40	0.45	0.79	1.34	3.0	0.006	0.85	0.0	0.06	14.36	0.00	2.451	10.80	10.00	10.2	89.8	0.0	-3.31	0.39	0.45	0.80	2.65	4060	590	10	0	0	0	0	logfile
✔	6WQ2	21868	2024-09-25	2020-04-28	4.0	4.59	—	4.0	0.005	0.71	0.0	0.04	16.89	0.00	2.043	19.10	0.02	8.1	91.9	0.0	-2.84	0.44	0.83	—	4.0	0.005	0.99	0.0	0.05	18.35	0.01	2.242	21.95	2.92	7.3	92.7	0.0	-0.59	2.17	0.44	0.83	—	56240	6052	36	448	0	0	0	logfile
✔	7WNZ	32636	2024-09-25	2022-01-20	3.4	3.47	—	4.0	0.003	0.52	0.0	0.05	10.39	0.00	2.177	6.80	0.00	6.3	93.7	0.0	-3.33	0.51	0.70	4.51	4.0	0.002	0.59	0.0	0.05	12.62	0.00	2.467	6.80	0.64	6.5	93.5	0.0	-5.80	0.52	0.31	0.66	5.47	9300	650	10	0	0	0	4780	logfile
✔	6KiQ	9997	2024-09-27	2019-07-19	3.62	3.66	—	3.8	0.035	3.74	145.0	0.27	19.81	0.04	2.201	12.20	14.75	18.6	70.7	10.7	-6.77	0.58	0.71	1.68	3.5	0.003	0.77	0.0	0.04	17.69	0.01	2.426	7.29	3.48	9.3	90.1	0.6	-2.36	1.74	0.62	0.74	1.07	15093	968	3	0	0	0	7444	logfile
✔	7SAQ	24953	2024-09-23	2021-09-23	2.9	2.87	—	3.1	0.006	0.84	0.0	0.07	14.71	0.02	2.029	11.87	0.00	12.8	87.2	0.0	-3.19	0.57	0.76	4.42	3.1	0.005	0.82	0.0	0.07	15.78	0.00	2.593	7.29	3.81	8.4	91.6	0.0	-3.29	1.18	0.50	0.81	4.79	5710	675	10	0	20	0	0	logfile
✔	6UFR	20759	2024-09-23	2019-09-24	2.5	2.80	—	2.8	0.012	0.96	0.0	0.07	13.71	0.01	2.209	5.48	0.00	6.6	93.4	0.0	-1.99	0.50	0.87	5.55	2.8	0.003	0.56	0.0	0.05	16.21	0.00	2.614	1.79	3.18	3.6	96.4	0.0	-0.79	0.91	0.51	0.88	4.72	4420	630	20	0	0	90	0	logfile
✔	7SP1	25364	2024-09-23	2021-11-02	3.4	3.65	—	3.9	0.006	1.29	0.0	0.07	19.39	0.01	2.288	11.67	0.00	2.9	97.1	0.0	-2.42	0.41	0.72	4.86	4.1	0.005	0.87	0.0	0.05	19.67	0.01	2.564	17.98	5.05	16.1	83.9	0.0	-3.77	1.67	0.40	0.75	4.64	4343	540	17	20	0	0	0	logfile
✔	7DWV	30887	2024-09-23	2021-01-18	3.07	2.95	—	3.6	0.007	0.80	0.0	0.06	14.69	0.00	2.024	16.67	0.00	26.8	73.2	0.0	-7.45	0.41	0.75	4.09	4.1	0.003	0.68	0.0	0.05	17.47	0.00	2.509	11.08	14.29	17.5	82.5	0.0	-5.79	1.12	0.38	0.71	1.87	2064	258	6	0	0	0	0	logfile
✔	7Xo3	33335	2024-09-23	2022-04-30	2.6	2.32	1.68	2.7	0.002	0.41	0.0	0.05	12.37	0.00	2.223	4.70	0.00	8.2	91.8	0.0	-3.31	0.45	0.81	5.78	2.6	0.003	0.55	0.0	0.05	16.00	0.00	2.641	1.32	1.52	10.4	89.6	0.0	-1.85	0.37	0.50	0.85	5.90	2598	378	6	0	0	0	0	logfile
✔	3J8i	6179	2024-09-27	2014-11-06	4.7	4.79	—	4.7	0.018	1.67	0.0	0.11	19.47	0.01	2.125	76.17	14.53	6.4	87.5	6.1	-1.59	0.66	0.76	—	4.7	0.003	0.90	0.0	0.04	14.22	0.01	2.124	12.48	0.00	12.3	87.1	0.5	-2.02	1.41	0.65	0.71	—	14800	1875	10	0	10	0	0	logfile
✔	7QL4	14063	2024-09-24	2021-12-19	3.2	3.36	2.99	3.5	0.011	1.86	0.0	0.10	12.28	0.01	2.511	0.28	0.00	8.3	91.7	0.0	-1.77	0.26	0.51	0.51	3.4	0.003	0.61	0.0	0.05	14.94	0.01	2.384	6.65	1.26	0.9	99.1	0.0	-1.86	3.11	0.30	0.72	3.23	7074	456	6	0	0	0	3606	logfile
✔	8GHS	40049	2024-09-26	2023-03-10	4.0	3.96	3.96	4.0	0.004	0.70	0.0	0.04	13.67	0.01	1.896	14.61	1.06	3.8	96.1	0.1	1.68	0.51	0.81	—	4.0	0.004	0.74	0.0	0.04	16.57	0.01	2.496	7.62	3.10	3.1	96.9	0.1	1.66	0.80	0.54	0.86	—	13726	1724	12	0	0	0	0	logfile
✔	8E5G	27912	2024-09-25	2022-08-22	3.9	4.43	4.33	4.2	0.006	1.05	10.0	0.10	17.24	0.00	1.918	47.42	0.00	9.6	89.9	0.5	-2.33	0.62	0.75	0.01	4.2	0.004	0.96	0.0	0.04	18.74	0.00	1.546	11.99	3.10	7.7	91.5	0.8	-2.83	0.79	0.63	0.75	0.51	9065	1100	10	0	20	0	0	logfile
✔	7QKH	14042	2024-09-23	2021-12-17	3.17	3.37	2.07	3.5	0.011	2.48	5.0	0.19	15.22	0.01	2.470	1.29	0.00	14.6	85.4	0.0	-3.56	0.37	0.74	3.98	6.5	0.004	0.96	0.0	0.22	15.38	0.00	2.563	5.81	0.56	5.7	94.3	0.0	-2.73	2.26	0.33	0.70	4.25	3105	204	6	0	0	0	1593	logfile
✔	8EHS	28151	2024-09-24	2022-09-14	3.3	2.87	3.21	3.3	0.002	0.47	0.0	0.04	14.12	0.00	2.082	3.04	0.00	1.3	98.7	0.0	1.50	0.54	0.80	3.22	3.3	0.005	0.62	0.0	0.05	15.71	0.00	2.497	5.21	3.37	1.3	98.7	0.0	0.20	0.48	0.54	0.83	2.78	7546	1015	7	0	0	0	0	logfile
✔	7U12	26275	2024-09-23	2022-02-19	3.5	3.59	—	4.4	0.011	1.06	0.0	0.07	16.72	0.01	2.160	20.06	5.51	8.0	92.0	0.0	-3.00	0.29	0.45	2.77	4.3	0.004	0.85	0.0	0.06	15.12	0.00	2.613	9.82	2.62	8.3	91.7	0.0	-3.84	2.90	0.33	0.57	2.04	3456	405	6	0	12	0	0	logfile
✔	7P66	13219	2024-09-23	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.008	0.71	0.0	0.05	15.27	0.00	2.552	5.65	2.37	7.0	93.0	0.0	-2.97	1.33	0.48	0.85	4.29	4060	540	5	0	0	0	0	logfile

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