Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8G09	29650	2024-09-28	2023-01-31	3.1	3.88	3.23	3.2	0.005	0.66	0.0	0.23	7.86	0.00	1.766	0.75	0.00	3.1	96.9	0.0	0.54	0.74	0.70	—	3.4	0.007	0.86	0.0	0.04	7.24	0.00	1.656	0.55	0.00	10.1	89.9	0.0	0.43	0.70	0.81	0.82	—	19599	4860	26	0	10	0	0	logfile
✔	8CYB	27073	2024-09-25	2022-05-23	2.7	3.56	2.88	3.2	0.004	0.62	1.0	0.05	19.33	0.00	1.966	7.28	0.20	5.0	94.7	0.3	-0.12	0.80	0.77	1.69	3.2	0.004	0.58	1.0	0.05	14.00	0.00	2.299	6.11	0.74	5.7	94.1	0.2	-0.45	0.42	0.80	0.78	2.07	54126	3432	29	0	114	0	25897	logfile
✔	7TRD	26086	2024-09-26	2022-01-28	3.3	3.39	—	3.4	0.004	0.64	0.0	0.04	21.93	0.00	2.206	7.50	0.12	4.3	95.7	0.0	-0.10	0.79	0.84	2.70	3.3	0.005	0.62	0.0	0.04	21.79	0.00	2.434	5.63	0.99	4.8	95.2	0.0	0.82	0.37	0.80	0.85	2.46	12240	934	3	224	0	0	0	logfile
✔	6R25	4710	2024-09-28	2019-03-15	4.61	8.06	—	3.8	0.009	1.05	0.0	0.06	25.64	0.02	1.036	12.86	5.67	4.9	93.8	1.3	-2.97	0.74	0.45	—	3.9	0.006	0.73	0.0	0.04	26.00	0.00	1.902	20.14	0.00	3.8	96.2	0.0	0.91	1.05	0.89	0.73	—	18654	1544	16	294	4	314	0	logfile
✔	5LMN	4073	2024-09-24	2016-08-01	3.55	3.68	3.61	3.6	0.007	1.42	35.0	0.12	26.55	0.01	0.925	19.85	21.59	10.4	86.7	2.8	-2.30	0.79	0.88	1.35	3.6	0.003	0.69	0.0	0.04	24.34	0.00	1.879	14.54	5.28	5.4	94.3	0.2	-0.99	1.55	0.76	0.83	1.40	54149	2623	27	1534	129	0	0	logfile
✔	7U58	26344	2024-09-25	2022-03-01	3.1	3.72	3.18	3.5	0.003	0.51	0.0	0.04	13.76	0.00	2.098	8.66	0.00	5.1	94.9	0.1	0.32	0.85	0.82	3.31	3.5	0.003	0.53	0.0	0.04	15.09	0.00	2.024	7.60	1.66	4.7	95.2	0.1	0.62	1.10	0.86	0.84	2.93	10087	1292	4	0	6	0	0	logfile
✔	8EYY	28724	2024-09-28	2022-10-29	4.9	6.21	5.32	4.3	0.003	0.58	0.0	0.04	12.98	0.00	2.165	21.05	0.06	7.2	92.6	0.2	-1.16	0.89	0.81	—	4.3	0.003	0.61	0.0	0.04	13.28	0.00	2.388	16.39	0.00	6.8	93.1	0.1	-1.26	1.14	0.90	0.84	—	14301	1773	6	0	0	0	0	logfile
✔	8DT3	27690	2024-09-23	2022-07-25	3.3	3.99	3.55	3.7	0.004	0.67	0.0	0.04	17.52	0.00	2.125	10.67	0.00	8.2	91.8	0.0	-0.65	0.78	0.83	2.90	3.7	0.004	0.71	0.0	0.05	15.51	0.00	2.488	8.41	3.11	6.9	93.1	0.0	-0.47	0.41	0.79	0.85	2.82	3821	485	4	0	3	0	0	logfile
✔	6N51	0345	2024-09-26	2018-11-20	4.0	4.15	—	4.0	0.006	0.86	0.0	0.05	9.75	0.01	2.274	5.73	0.00	6.8	93.2	0.0	-3.65	0.71	0.81	—	4.0	0.003	0.74	0.0	0.04	13.76	0.00	2.436	9.37	1.96	4.3	95.7	0.0	-0.56	1.42	0.72	0.82	—	14087	1830	6	0	6	0	0	logfile
✔	6SH4	10193	2024-09-26	2019-08-05	4.4	4.48	—	4.3	0.005	1.01	0.0	0.07	5.13	0.00	2.405	2.99	0.00	6.8	92.4	0.8	-2.94	0.72	0.77	—	4.3	0.003	0.70	0.0	0.04	4.38	0.00	2.612	0.37	0.00	7.8	92.2	0.0	0.03	2.27	0.74	0.83	—	12957	2632	7	0	0	0	0	logfile
✔	6PR5	20457	2024-09-25	2019-07-10	3.3	3.71	—	3.6	0.008	0.78	0.0	0.05	22.94	0.00	1.963	13.80	0.71	1.4	98.3	0.3	-3.27	0.76	0.82	2.68	3.6	0.003	0.61	0.0	0.04	23.32	0.00	1.622	8.79	2.71	4.5	95.5	0.0	0.71	1.15	0.75	0.82	2.25	10194	960	10	124	6	0	0	logfile
✔	8CSY	26975	2024-09-23	2022-05-13	2.7	2.51	2.69	2.6	0.003	0.56	0.0	0.04	14.36	0.00	2.224	4.67	4.06	1.6	98.4	0.0	1.07	0.63	0.86	4.96	2.6	0.003	0.54	0.0	0.04	17.34	0.00	2.638	4.67	3.45	1.7	98.3	0.0	1.01	0.47	0.63	0.87	4.33	4638	584	4	0	0	19	0	logfile
✔	6QWL	4660	2024-09-25	2019-03-05	4.1	4.22	—	4.1	0.008	1.01	0.0	0.06	17.05	0.01	2.214	10.07	0.93	10.8	89.1	0.1	-4.69	0.75	0.74	—	4.1	0.003	0.67	0.0	0.04	16.08	0.00	2.472	11.19	0.00	6.0	94.0	0.0	-1.54	2.47	0.75	0.73	—	10408	1244	5	26	0	0	0	logfile
✔	7P03	13142	2024-09-29	2021-06-29	3.45	3.78	—	3.7	0.006	0.68	0.0	0.04	13.86	0.00	1.801	6.52	0.00	5.4	94.6	0.0	-0.70	0.62	0.71	1.37	3.7	0.003	0.53	0.0	0.04	15.92	0.00	2.419	4.49	0.87	3.6	96.4	0.0	0.83	0.87	0.63	0.77	1.92	21149	1333	1	0	0	0	10498	logfile
✔	6ZNM	11317	2024-09-28	2020-07-06	4.1	4.41	3.90	4.1	0.013	1.75	0.0	0.09	13.50	0.00	1.790	1.80	0.00	7.2	92.6	0.1	-2.56	0.77	0.75	—	4.1	0.004	0.71	0.0	0.04	13.44	0.00	2.092	10.97	0.00	5.0	94.9	0.1	0.11	1.59	0.82	0.85	—	19253	2470	17	0	138	0	0	logfile
✔	6UT4	20865	2024-09-28	2019-10-29	3.1	3.25	3.14	3.2	0.004	0.75	1.0	0.05	14.35	0.01	2.109	5.89	0.15	3.8	96.2	0.0	-3.72	0.77	0.84	2.49	3.2	0.003	0.56	0.0	0.04	15.76	0.00	1.965	7.81	1.57	4.3	95.7	0.0	0.12	1.83	0.78	0.86	2.36	19126	2315	17	0	12	12	0	logfile
✔	8FEi	29028	2024-09-23	2022-12-06	3.0	4.02	3.08	3.6	0.007	0.91	0.0	0.05	14.00	0.00	1.541	5.78	0.18	5.1	94.9	0.0	-3.98	0.90	0.84	3.15	3.6	0.003	0.58	0.0	0.04	14.65	0.00	2.009	6.46	1.07	2.8	97.2	0.0	0.00	0.47	0.91	0.85	2.68	5189	674	2	0	2	0	0	logfile
✔	7WX4	32876	2024-09-23	2022-02-14	3.4	3.64	2.77	3.7	0.006	0.59	0.0	0.04	16.46	0.00	2.219	8.20	6.39	7.2	92.8	0.0	-3.40	0.43	0.82	0.72	3.7	0.003	0.54	0.0	0.04	17.80	0.00	2.455	5.46	5.02	5.2	94.8	0.0	-0.01	0.48	0.44	0.82	0.40	1992	260	2	0	0	0	0	logfile
✔	7LBF	23253	2024-09-27	2021-01-07	2.8	3.23	—	3.1	0.003	0.56	0.0	0.04	13.18	0.00	2.098	3.61	0.00	2.4	97.6	0.0	0.66	0.76	0.83	3.83	3.1	0.004	0.63	0.0	0.04	15.55	0.00	2.434	5.74	2.16	3.0	97.0	0.0	0.53	1.42	0.71	0.81	3.09	15656	1923	15	0	29	0	0	logfile
✔	6XMS	22262	2024-09-24	2020-06-30	3.4	4.03	3.50	3.8	0.006	1.18	0.0	0.04	12.68	0.00	1.862	6.08	0.00	4.6	95.4	0.0	-2.39	0.74	0.87	2.45	3.8	0.004	0.58	0.0	0.04	14.28	0.00	1.882	4.41	1.11	3.5	96.5	0.0	0.68	0.37	0.74	0.88	2.13	8389	1091	2	0	2	0	0	logfile

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