Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8HD6	34670	2024-09-24	2022-11-03	3.73	4.52	3.73	3.2	0.002	0.54	0.0	0.02	23.56	0.00	1.969	2.97	0.00	0.0	0.0	0.0	—	0.90	0.78	—	3.3	0.007	0.76	0.0	0.04	24.78	0.01	1.771	18.56	0.00	0.0	0.0	0.0	—	2.23	0.91	0.82	—	8980	0	2	419	25	0	0	logfile
✔	7YCH	33739	2024-09-24	2022-07-01	3.09	4.46	3.30	3.5	0.002	0.48	0.0	0.02	24.19	0.00	1.420	15.91	0.00	0.0	0.0	0.0	—	0.92	0.84	—	3.6	0.007	0.68	0.0	0.04	24.23	0.00	1.795	28.44	0.00	0.0	0.0	0.0	—	1.46	0.94	0.88	—	8661	0	3	404	4	0	0	logfile
✔	7EZ0	31385	2024-09-24	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.004	0.61	0.0	0.03	23.75	0.00	1.904	6.34	0.00	0.0	0.0	0.0	—	2.04	0.77	0.86	—	8306	0	2	387	27	0	0	logfile
✔	7PBW	13307	2024-09-25	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.005	0.83	0.0	0.04	14.43	0.01	2.204	6.90	0.15	0.0	100.0	0.0	4.47	0.28	0.77	0.90	7.33	9500	873	54	0	81	230	0	logfile
✔	8FA2	28948	2024-09-23	2022-11-25	2.82	2.48	3.15	2.1	0.006	0.55	0.0	0.04	13.54	0.00	2.297	6.56	0.00	1.8	98.2	0.0	-0.12	0.76	0.79	0.72	2.0	0.003	0.45	0.0	0.03	14.36	0.00	2.635	6.17	0.67	0.0	100.0	0.0	5.77	0.33	0.76	0.79	0.61	2577	342	6	0	0	0	0	logfile
✔	8i7N	35223	2024-09-24	2023-02-01	2.98	3.12	2.92	3.0	0.006	0.66	0.0	0.04	23.30	0.00	1.982	2.00	0.00	0.0	0.0	0.0	—	0.82	0.83	—	3.0	0.003	0.53	0.0	0.03	23.01	0.00	1.950	4.52	0.00	0.0	0.0	0.0	—	0.91	0.87	0.91	—	8979	0	2	418	29	0	0	logfile
✔	7R6L	24281	2024-09-24	2021-06-22	2.85	3.04	—	3.0	0.008	0.89	0.0	0.05	25.02	0.01	1.985	4.24	0.00	0.0	0.0	0.0	—	0.67	0.86	—	3.0	0.006	0.74	0.0	0.04	24.57	0.01	1.906	6.18	0.00	0.0	0.0	0.0	—	0.10	0.62	0.86	—	7857	0	3	366	20	0	0	logfile
✔	6UES	20755	2024-09-23	2019-09-23	3.7	3.94	—	3.2	0.002	0.48	0.0	0.02	26.31	0.00	2.100	7.29	0.00	0.0	0.0	0.0	—	0.87	0.76	—	3.3	0.007	0.90	0.0	0.04	27.47	0.01	1.929	30.44	0.00	0.0	0.0	0.0	—	0.83	0.88	0.83	—	3842	0	1	119	0	0	1291	logfile
✔	6C9i	7436	2024-09-29	2018-01-26	3.09	3.21	—	3.2	0.029	1.48	0.0	0.12	9.22	0.01	2.417	0.81	0.00	0.3	99.6	0.1	2.36	0.79	0.85	4.97	3.2	0.003	0.43	0.0	0.04	15.15	0.00	2.594	3.37	0.69	0.0	100.0	0.0	3.78	2.43	0.71	0.89	3.63	23700	3087	24	0	0	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	7RZV	24779	2024-09-23	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.35	0.0	0.03	15.93	0.00	2.430	3.69	1.01	0.0	100.0	0.0	5.97	0.88	0.83	0.83	1.79	2562	339	6	0	0	0	0	logfile
✔	7RZS	24776	2024-09-23	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.41	0.0	0.03	16.11	0.00	2.489	3.44	1.42	0.0	100.0	0.0	5.54	0.87	0.79	0.82	1.14	2445	324	6	0	0	0	0	logfile
✔	6UET	20756	2024-09-23	2019-09-23	4.1	4.91	—	5.1	0.010	1.61	0.0	0.07	26.22	0.02	1.977	4.88	0.00	0.0	0.0	0.0	—	0.62	0.73	—	5.0	0.007	0.98	0.0	0.05	27.49	0.01	2.150	47.53	0.00	0.0	0.0	0.0	—	0.74	0.66	0.80	—	3869	0	2	119	1	0	1291	logfile
✔	8CZi	27098	2024-09-23	2022-05-24	2.22	2.26	2.61	2.0	0.004	0.33	0.0	0.03	14.48	0.00	2.382	6.62	0.00	0.0	100.0	0.0	2.90	0.78	0.80	1.97	2.0	0.003	0.38	0.0	0.03	15.19	0.00	2.450	4.09	1.01	0.0	100.0	0.0	5.82	0.85	0.82	0.84	2.06	2550	339	6	0	0	0	0	logfile
✔	6LHW	0901	2024-09-26	2019-12-10	4.84	5.29	—	4.6	0.008	1.37	1.0	0.05	5.28	0.00	1.530	14.43	0.00	0.0	0.0	0.0	—	0.64	0.56	—	4.6	0.008	1.28	0.0	0.04	6.20	0.00	2.244	9.56	0.00	0.0	0.0	0.0	—	2.92	0.85	0.76	—	7644	0	3	0	1541	0	0	logfile
✔	7RZU	24778	2024-09-23	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.48	0.0	0.03	15.61	0.00	2.626	4.66	1.40	0.0	100.0	0.0	5.29	0.48	0.80	0.81	1.95	2439	324	6	0	0	0	0	logfile
✔	7RZR	24775	2024-09-23	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.005	0.40	0.0	0.03	15.17	0.00	2.631	4.03	0.35	0.0	100.0	0.0	5.91	0.32	0.82	0.83	3.51	2448	324	6	0	0	0	0	logfile
✔	7RZQ	24774	2024-09-23	2021-08-27	2.09	2.26	—	2.7	0.006	0.40	0.0	0.03	14.23	0.00	2.339	4.69	0.00	1.9	98.1	0.0	2.15	0.78	0.79	1.56	2.0	0.002	0.29	0.0	0.03	14.97	0.00	2.630	4.28	1.07	0.0	100.0	0.0	6.40	0.29	0.81	0.82	1.34	2421	322	6	0	0	0	0	logfile
✔	7RZT	24777	2024-09-23	2021-08-27	2.35	2.27	—	2.1	0.005	0.32	0.0	0.03	14.89	0.00	2.388	3.83	0.00	2.9	97.1	0.0	2.81	0.77	0.79	2.62	2.1	0.003	0.32	0.0	0.03	15.49	0.00	2.612	5.44	0.00	0.0	100.0	0.0	6.18	0.22	0.80	0.83	2.98	2451	324	6	0	0	0	0	logfile
✔	7YCi	33740	2024-09-24	2022-07-01	2.98	4.31	3.09	3.2	0.002	0.48	0.0	0.02	24.35	0.00	1.521	15.79	0.00	0.0	0.0	0.0	—	0.93	0.84	—	3.3	0.007	0.68	0.0	0.04	24.68	0.00	1.863	22.55	0.00	0.0	0.0	0.0	—	1.23	0.95	0.90	—	8474	0	3	395	4	0	0	logfile

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