Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8QHP	18415	2024-09-24	2023-09-08	2.8	3.49	2.82	3.3	0.002	0.38	0.0	0.04	11.64	0.00	2.176	6.09	0.00	1.0	99.0	0.0	1.77	0.76	0.86	4.14	3.3	0.003	0.50	0.0	0.04	14.96	0.00	2.377	5.65	1.12	1.1	98.9	0.0	2.41	0.85	0.74	0.84	3.48	6788	820	4	0	2	0	0	logfile
✔	8BC4	15962	2024-09-27	2022-10-14	2.7	2.11	2.15	2.5	0.015	2.01	1.0	0.10	18.10	0.02	2.310	4.45	10.79	4.1	95.8	0.0	-4.88	0.59	0.76	3.14	2.4	0.003	0.61	0.0	0.04	16.67	0.00	2.586	3.80	1.78	1.4	98.6	0.0	1.28	0.63	0.61	0.78	3.69	16440	2167	29	0	9	270	0	logfile
✔	6SKi	10225	2024-09-23	2019-08-15	2.6	2.97	2.57	2.9	0.004	0.72	0.0	0.04	16.20	0.00	2.210	8.64	1.29	1.6	98.4	0.0	-0.80	0.63	0.83	4.83	2.9	0.004	0.60	0.0	0.04	16.99	0.00	2.496	5.46	1.94	2.7	97.3	0.0	0.50	0.53	0.64	0.84	4.50	4434	569	2	0	0	0	0	logfile
✔	8EJK	28185	2024-09-24	2022-09-17	3.4	3.54	3.44	3.5	0.004	0.61	1.0	0.05	14.17	0.00	2.152	9.07	0.11	3.1	96.9	0.0	0.74	0.72	0.83	2.20	3.5	0.003	0.62	0.0	0.04	15.93	0.00	2.314	7.30	2.68	3.7	96.3	0.0	1.04	0.39	0.73	0.86	1.85	8594	1124	6	0	1	0	0	logfile
✔	6LMT	0919	2024-09-28	2019-12-26	2.66	2.77	2.50	2.7	0.012	1.14	0.0	0.06	11.69	0.01	2.010	4.14	0.00	2.4	97.6	0.0	-4.48	0.52	0.75	5.03	2.7	0.004	0.70	0.0	0.04	14.77	0.00	2.508	11.55	1.95	1.7	98.3	0.0	2.17	1.29	0.69	0.88	3.08	17552	2032	16	0	32	0	0	logfile
✔	7LXT	23574	2024-09-24	2021-03-05	3.4	3.70	3.40	3.7	0.009	0.85	0.0	0.05	14.93	0.00	1.972	18.04	0.79	10.7	89.3	0.0	-2.90	0.75	0.82	2.36	3.7	0.005	0.69	0.0	0.05	16.77	0.00	1.168	10.99	2.99	8.1	91.9	0.0	-1.40	0.42	0.76	0.84	1.76	50536	6318	34	0	6	0	0	logfile
✔	8EVU	28637	2024-09-26	2022-10-20	2.5804	3.19	2.52	2.9	0.003	0.44	0.0	0.04	10.10	0.00	2.279	2.29	0.08	1.3	98.7	0.0	1.17	0.78	0.92	4.78	2.9	0.004	0.57	0.0	0.04	13.49	0.00	1.117	3.62	0.72	2.2	97.8	0.0	1.36	0.42	0.76	0.91	3.95	11902	1540	9	0	5	0	0	logfile
✔	6P7M	20266	2024-09-28	2019-06-06	3.0	3.31	3.09	3.3	0.006	0.63	0.0	0.05	14.90	0.00	2.043	7.97	0.00	5.6	94.4	0.0	-3.37	0.72	0.84	3.74	3.3	0.005	0.63	0.0	0.04	16.88	0.00	2.022	7.12	1.61	4.6	95.4	0.0	-0.25	1.34	0.73	0.86	3.20	10141	1168	4	26	2	0	0	logfile
✔	6MUV	9257	2024-09-28	2018-10-23	3.8	4.21	3.84	4.1	0.008	1.22	6.0	0.07	14.93	0.01	2.233	7.34	1.10	9.1	90.7	0.1	-3.64	0.79	0.81	1.15	4.1	0.003	0.71	0.0	0.04	16.90	0.00	2.386	11.59	3.34	5.4	94.6	0.0	-0.42	0.74	0.78	0.81	0.95	71112	8796	42	0	0	0	0	logfile
✔	6T9K	10414	2024-09-28	2019-10-28	3.3	3.35	3.36	3.3	0.005	0.92	0.0	0.05	15.57	0.01	2.247	5.90	0.43	7.1	92.8	0.1	-4.36	0.71	0.74	1.91	3.3	0.005	0.70	0.0	0.05	16.91	0.00	2.148	9.16	3.08	7.0	93.0	0.0	-0.95	1.16	0.73	0.78	1.77	19241	2426	11	0	0	0	0	logfile
✔	8EBU	27998	2024-09-29	2022-08-31	3.3	2.53	3.30	2.0	0.002	0.49	0.0	0.04	13.04	0.00	2.188	7.98	3.02	4.0	96.0	0.0	0.84	0.76	0.72	1.90	2.1	0.003	0.77	0.0	0.04	17.67	0.00	2.259	11.85	3.94	5.2	94.8	0.0	-0.10	1.52	0.76	0.77	1.65	23543	2808	15	47	7	0	0	logfile
✔	7V00	26924	2024-09-29	2022-05-09	3.87	4.80	3.89	3.9	0.006	0.86	0.0	0.05	14.51	0.00	1.987	15.28	0.32	4.7	95.3	0.0	-1.00	0.85	0.72	1.70	4.0	0.004	0.70	0.0	0.04	16.51	0.00	2.412	11.95	1.48	4.0	96.0	0.0	0.07	1.08	0.90	0.82	1.44	20420	2430	12	30	2	0	0	logfile
✔	8E5L	27914	2024-09-28	2022-08-22	4.2	8.91	5.82	7.6	0.003	0.64	0.0	0.04	11.89	0.00	1.299	26.62	1.63	1.3	98.4	0.3	-0.83	0.63	0.37	—	7.5	0.003	0.71	0.0	0.04	12.53	0.00	0.980	15.84	0.00	3.3	96.7	0.0	0.48	1.31	0.88	0.82	—	20058	2502	13	9	18	0	0	logfile
✔	7M7E	23710	2024-09-27	2021-03-28	3.2	3.78	—	3.7	0.006	1.09	12.0	0.06	16.73	0.01	2.151	8.15	9.50	3.9	96.1	0.0	-1.47	0.69	0.72	1.63	3.7	0.003	0.57	0.0	0.04	15.03	0.00	2.540	4.82	1.91	3.5	96.5	0.0	0.10	0.69	0.74	0.80	2.03	16677	2230	4	0	0	0	0	logfile
✔	7X34	32978	2024-09-23	2022-02-27	3.1	5.47	3.73	3.1	0.009	1.17	0.0	0.05	24.84	0.01	2.316	5.71	0.00	3.1	96.9	0.0	-2.86	0.21	0.78	1.18	3.3	0.005	0.81	0.0	0.04	25.40	0.00	2.071	30.52	2.60	4.1	95.9	0.0	-0.30	0.66	0.21	0.78	-0.93	2762	100	2	94	0	0	0	logfile
✔	7ZK6	14756	2024-09-25	2022-04-12	3.1	3.35	3.12	3.4	0.009	0.90	1.0	0.05	14.77	0.00	2.043	9.90	0.10	1.6	98.4	0.0	0.33	0.64	0.80	2.34	3.4	0.003	0.55	0.0	0.04	16.49	0.00	1.970	6.79	2.48	2.1	97.9	0.0	1.47	0.58	0.61	0.81	1.74	9310	1178	2	0	6	4	0	logfile
✔	7ZXE	15009	2024-09-26	2022-05-20	3.5	4.20	3.49	3.6	0.003	0.55	0.0	0.04	19.34	0.00	1.978	8.64	0.00	3.4	96.6	0.0	0.71	0.76	0.76	1.21	3.7	0.003	0.72	0.0	0.04	20.70	0.00	2.430	10.36	1.50	4.4	95.6	0.0	0.74	1.65	0.77	0.81	1.56	14150	1500	11	93	2	0	0	logfile
✔	7XKQ	33264	2024-09-30	2022-04-20	3.3	3.61	3.27	3.3	0.003	0.50	0.0	0.04	14.15	0.00	1.967	4.96	0.00	2.0	98.0	0.0	1.22	0.86	0.89	2.81	3.3	0.005	0.56	0.0	0.04	15.21	0.00	1.881	4.94	1.20	2.8	97.2	0.0	1.24	0.38	0.87	0.91	2.58	25299	3259	15	0	13	0	0	logfile
✔	7XKP	33259	2024-09-30	2022-04-20	3.0	3.46	3.07	3.2	0.002	0.48	0.0	0.04	13.19	0.00	2.089	3.88	0.00	2.4	97.6	0.0	1.63	0.84	0.90	3.37	3.2	0.004	0.57	0.0	0.05	14.97	0.00	1.959	3.65	1.09	3.0	97.0	0.0	1.14	0.29	0.84	0.91	3.08	24105	3128	8	0	2	0	0	logfile
✔	6TU3	10586	2024-09-23	2020-01-02	2.7	2.82	2.74	2.8	0.006	0.81	0.0	0.05	16.10	0.01	1.264	9.26	8.29	5.8	94.2	0.0	-2.57	0.76	0.83	2.83	2.8	0.005	0.72	1.0	0.05	17.43	0.00	2.256	5.59	4.28	3.5	96.5	0.0	0.15	0.57	0.76	0.85	2.56	47002	6158	28	0	0	0	0	logfile

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