Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7QV6	14168	2024-09-23	2022-01-19	3.5	3.33	3.32	3.5	0.011	0.59	0.0	0.05	11.56	0.00	2.480	1.86	0.00	1.1	98.9	0.0	-1.85	0.39	0.86	5.72	3.5	0.002	0.41	0.0	0.06	12.08	0.00	2.506	1.45	0.00	0.0	100.0	0.0	0.74	0.42	0.41	0.86	6.38	4842	306	18	0	0	0	2556	logfile
✔	5H1B	9566	2024-09-24	2016-10-08	4.4	3.94	—	3.6	0.010	1.41	0.0	0.06	16.13	0.01	1.503	54.25	5.67	6.2	91.1	2.6	-1.51	0.59	0.70	—	3.6	0.003	0.71	0.0	0.04	14.09	0.00	2.013	12.70	0.00	4.2	95.0	0.9	0.86	2.98	0.65	0.82	—	7359	924	7	9	6	0	0	logfile
✔	5H1C	9567	2024-09-24	2016-10-08	4.5	4.34	—	3.8	0.009	1.30	0.0	0.05	15.37	0.00	1.454	41.46	4.44	4.9	92.8	2.3	-2.37	0.52	0.66	—	3.8	0.003	0.68	0.0	0.04	15.24	0.00	1.933	11.71	0.00	3.9	95.1	1.0	0.25	0.88	0.58	0.82	—	7602	933	8	18	6	0	0	logfile
✔	7BTE	30177	2024-09-27	2020-04-01	4.2	4.34	—	4.2	0.006	0.70	0.0	0.05	15.02	0.00	1.835	13.89	13.76	12.7	87.3	0.0	-5.33	0.76	0.90	—	4.2	0.002	0.68	0.0	0.04	12.43	0.00	1.958	7.90	0.00	4.7	95.3	0.0	-1.19	1.50	0.75	0.88	—	14814	1894	13	0	10	0	0	logfile
✔	6RiB	4887	2024-09-27	2019-04-23	4.2	3.32	—	4.0	0.008	1.12	0.0	0.06	18.48	0.00	0.563	15.47	9.09	10.1	89.9	0.0	-5.68	0.73	0.66	—	3.9	0.009	1.10	0.0	0.06	14.45	0.01	2.446	26.95	0.00	22.7	77.3	0.0	-6.12	1.55	0.77	0.74	—	16368	2222	22	0	0	0	0	logfile
✔	5YRN	6842	2024-09-24	2017-11-09	4.1	3.09	3.51	6.7	0.007	1.00	0.0	0.05	10.65	0.00	2.371	8.18	0.00	4.7	95.3	0.0	-3.39	0.53	0.56	—	3.8	0.004	0.91	0.0	0.05	14.81	0.01	2.368	18.76	0.00	3.3	96.7	0.0	-0.71	2.92	0.64	0.80	—	8280	1044	12	0	0	0	0	logfile
✔	6BQW	7134	2024-09-28	2017-11-28	4.2	4.44	—	4.3	0.016	1.28	0.0	0.07	13.92	0.01	2.307	8.25	0.00	10.3	83.9	5.9	-3.51	0.73	0.68	—	4.3	0.003	0.82	0.0	0.05	14.84	0.00	2.365	18.18	0.00	12.3	86.6	1.1	-2.02	1.78	0.79	0.80	—	19953	2475	18	0	9	0	0	logfile
✔	7RX5	24725	2024-09-24	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	12.76	0.00	2.676	2.72	0.00	0.0	100.0	0.0	5.55	0.19	0.70	0.87	2.91	9120	1160	40	0	0	0	0	logfile
✔	7YMN	33934	2024-09-23	2022-07-28	3.46	3.33	3.01	3.9	0.007	0.73	0.0	0.05	12.25	0.00	2.234	11.60	0.00	17.6	82.4	0.0	-5.43	0.38	0.81	4.13	3.5	0.003	0.59	0.0	0.05	13.64	0.00	2.607	5.23	0.00	5.4	94.6	0.0	-4.44	0.34	0.38	0.81	4.09	3468	456	6	0	0	0	0	logfile
✔	8CR9	16805	2024-09-24	2023-03-08	4.2	3.61	4.06	4.0	0.013	1.97	3.0	0.10	14.42	0.02	2.568	0.46	2.87	9.6	89.0	1.4	-2.67	0.57	0.61	—	4.0	0.003	0.71	0.0	0.04	13.84	0.01	2.262	7.08	0.00	13.3	86.4	0.4	-2.90	1.03	0.56	0.58	—	8621	571	3	0	0	0	4272	logfile
✔	8D9M	27266	2024-09-27	2022-06-10	4.2	3.57	4.20	3.3	0.007	1.02	0.0	0.05	16.46	0.01	1.684	31.60	0.45	17.2	82.8	0.0	-2.61	0.83	0.80	—	3.2	0.007	0.97	0.0	0.05	16.51	0.00	1.549	16.87	0.00	13.4	86.6	0.0	-2.68	0.59	0.83	0.80	—	15967	1806	14	0	56	0	0	logfile
✔	8DMG	27536	2024-09-28	2022-07-08	4.4	5.39	4.50	4.6	0.029	2.33	20.0	0.12	16.95	0.01	0.312	28.72	6.80	6.0	92.3	1.7	-2.43	0.79	0.61	—	4.6	0.006	0.96	0.0	0.04	13.80	0.01	2.149	84.69	0.00	7.0	92.9	0.0	-0.13	2.25	0.93	0.85	—	16844	2068	4	0	18	0	202	logfile
✔	7QKG	14041	2024-09-23	2021-12-17	3.36	3.19	3.09	3.4	0.010	2.03	0.0	0.10	10.76	0.01	2.528	0.00	0.00	6.4	93.6	0.0	-1.98	0.38	0.80	4.23	3.4	0.002	0.57	0.0	0.05	13.72	0.00	2.634	1.62	0.00	4.5	95.5	0.0	-1.18	0.85	0.34	0.81	4.45	2469	162	3	0	0	0	1278	logfile
✔	7QJV	14023	2024-09-26	2021-12-17	3.29	3.75	2.41	3.4	0.012	2.13	7.0	0.11	11.77	0.01	2.497	0.72	0.13	9.5	90.5	0.0	-2.07	0.44	0.77	2.75	3.4	0.003	0.55	0.0	0.05	12.66	0.00	2.506	2.02	0.00	3.7	96.3	0.0	-1.92	0.53	0.44	0.77	3.69	13860	900	12	0	0	0	7056	logfile
✔	6WL8	21817	2024-09-29	2020-04-18	4.1	4.58	—	4.3	0.005	0.65	0.0	0.05	15.48	0.00	2.395	2.78	0.00	0.0	100.0	0.0	-1.08	0.73	0.86	—	4.2	0.003	0.58	0.0	0.03	15.32	0.00	2.353	9.20	0.00	0.3	99.7	0.0	4.72	1.80	0.74	0.87	—	23850	3074	106	0	0	0	0	logfile
✔	8To9	41440	2024-09-28	2023-08-03	4.03	4.87	4.07	4.2	0.005	0.98	0.0	0.06	14.79	0.01	2.328	5.45	0.00	7.0	93.0	0.0	-2.52	0.79	0.76	—	4.2	0.004	0.67	0.0	0.05	12.86	0.00	2.419	11.00	0.00	8.4	91.6	0.0	-1.33	1.02	0.81	0.83	—	18788	2249	36	0	82	0	0	logfile
✔	6WL9	21818	2024-09-29	2020-04-18	4.2	4.68	—	4.4	0.006	0.53	0.0	0.04	13.18	0.00	2.052	24.33	0.00	1.9	98.1	0.0	1.21	0.74	0.87	—	4.4	0.004	0.82	0.0	0.04	14.43	0.00	2.293	12.95	0.00	0.1	99.9	0.0	3.18	1.41	0.73	0.86	—	23400	3016	104	0	0	0	0	logfile
✔	5Li4	4052	2024-09-28	2016-07-14	4.2	5.13	—	4.0	0.053	3.07	114.0	0.34	14.44	0.02	0.111	93.07	2.94	14.0	79.1	6.9	-4.32	0.24	0.30	—	4.4	0.004	1.02	0.0	0.05	14.11	0.01	2.275	24.65	0.00	15.2	83.7	1.1	-3.90	4.20	0.34	0.58	—	20070	2562	6	0	0	0	0	logfile
✔	6E9Y	9020	2024-09-24	2018-08-01	4.3	4.50	—	4.3	0.008	0.73	0.0	0.04	7.51	0.00	1.433	25.35	0.00	3.1	96.9	0.0	-3.58	0.75	0.80	—	4.3	0.002	0.48	0.0	0.03	11.00	0.00	2.184	5.82	0.00	0.6	99.4	0.0	2.82	1.50	0.76	0.82	—	54450	3405	15	0	0	0	28155	logfile
✔	8CZD	27095	2024-09-27	2022-05-24	4.6	4.07	4.58	4.4	0.005	0.90	0.0	0.05	16.56	0.00	2.121	23.70	0.00	8.7	91.3	0.0	-0.30	0.46	0.65	—	4.2	0.004	0.88	0.0	0.05	15.86	0.01	2.484	20.59	0.00	7.7	92.3	0.0	-0.99	1.66	0.44	0.63	—	17640	2120	20	0	0	0	0	logfile

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