Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7N58	24182	2024-09-25	2021-06-05	3.4	3.79	3.58	3.8	0.004	0.84	0.0	0.05	13.09	0.01	2.146	14.80	0.00	2.8	97.2	0.0	-0.83	0.61	0.67	1.16	3.8	0.003	0.65	0.0	0.04	16.21	0.00	2.552	8.73	1.69	5.3	94.7	0.0	0.64	0.56	0.64	0.72	1.06	9326	1200	2	0	0	0	0	logfile
✔	7B9K	12104	2024-09-26	2020-12-14	3.16	3.23	3.17	3.3	0.005	0.66	0.0	0.05	14.96	0.01	2.168	13.51	1.11	5.0	95.0	0.0	-3.10	0.73	0.83	3.07	3.3	0.006	0.62	0.0	0.05	14.93	0.00	2.429	10.08	0.92	6.0	94.0	0.0	-0.60	0.43	0.73	0.85	2.50	59136	7680	24	0	0	0	0	logfile
✔	7AiR	11803	2024-09-26	2020-09-28	3.66	4.42	3.80	4.2	0.008	0.97	0.0	0.05	17.15	0.01	2.231	8.37	1.14	3.3	96.7	0.0	-1.31	0.67	0.74	1.21	4.2	0.003	0.74	0.0	0.04	16.74	0.00	2.396	7.08	4.65	3.3	96.7	0.0	1.12	0.78	0.66	0.82	1.05	13504	1751	7	0	11	0	0	logfile
✔	7SK9	25177	2024-09-25	2021-10-19	3.7	4.01	—	3.9	0.005	0.62	0.0	0.05	15.65	0.00	2.028	4.76	0.00	4.4	95.6	0.0	1.15	0.71	0.81	1.92	3.9	0.003	0.53	0.0	0.04	14.43	0.00	2.362	4.49	1.26	5.1	94.9	0.0	1.18	0.40	0.70	0.81	1.92	11261	716	4	0	3	0	5561	logfile
✔	7BZF	30252	2024-09-25	2020-04-27	3.26	3.61	3.32	3.6	0.003	0.61	0.0	0.04	15.05	0.00	2.199	11.67	0.00	8.5	91.5	0.0	-4.42	0.73	0.77	2.58	3.6	0.003	0.61	0.0	0.04	16.75	0.00	2.423	9.41	1.80	6.7	93.3	0.0	-1.26	0.49	0.69	0.77	1.85	9932	1200	7	19	2	0	0	logfile
✔	8GU6	34270	2024-09-27	2022-09-10	3.1	3.33	3.14	3.4	0.002	0.53	0.0	0.04	18.66	0.00	2.091	13.08	0.14	5.6	94.4	0.0	-0.34	0.70	0.79	2.37	3.3	0.003	0.56	0.0	0.04	18.58	0.00	2.545	9.67	3.98	6.3	93.7	0.0	-0.30	0.29	0.69	0.79	2.38	15261	1870	5	50	4	0	0	logfile
✔	7N5A	24184	2024-09-25	2021-06-05	3.95	4.30	3.92	4.1	0.003	0.61	0.0	0.04	14.01	0.00	2.045	11.83	0.20	2.1	97.9	0.0	0.92	0.69	0.77	0.50	4.1	0.005	0.77	0.0	0.05	15.84	0.00	1.814	15.37	1.41	3.7	96.3	0.0	0.93	0.42	0.70	0.78	0.52	9254	1178	4	0	6	0	0	logfile
✔	7XTZ	33453	2024-09-25	2022-05-18	2.8	2.99	2.73	2.9	0.012	0.90	0.0	0.05	13.65	0.00	2.204	0.77	0.42	3.2	96.8	0.0	-0.29	0.83	0.84	4.09	2.9	0.003	0.51	0.0	0.04	13.54	0.00	2.220	1.89	0.56	2.9	97.1	0.0	-0.10	0.33	0.83	0.86	3.92	51900	3291	21	0	75	0	25032	logfile
✔	7TL1	25983	2024-09-30	2022-01-18	3.5	3.79	3.47	3.6	0.004	0.69	0.0	0.05	11.66	0.01	2.302	3.28	0.00	3.6	96.4	0.0	-0.64	0.85	0.83	2.56	3.5	0.002	0.48	0.0	0.04	12.18	0.00	2.412	4.41	0.40	2.8	97.2	0.0	0.70	0.27	0.85	0.84	2.34	25109	3138	11	0	38	0	0	logfile
✔	7QFQ	13947	2024-09-25	2021-12-06	3.6	3.83	3.58	4.0	0.002	0.54	0.0	0.04	12.93	0.00	2.177	8.31	0.00	5.4	94.6	0.0	-0.70	0.65	0.70	1.50	4.0	0.004	0.58	0.0	0.04	14.90	0.00	2.484	7.17	1.51	6.9	93.1	0.0	-0.96	0.38	0.68	0.74	1.31	10659	1291	1	0	0	0	0	logfile
✔	7YoV	33988	2024-09-26	2022-08-02	3.25	3.39	3.20	3.3	0.011	1.17	0.0	0.06	11.20	0.01	2.102	6.46	1.14	7.6	92.4	0.0	-3.95	0.72	0.76	2.51	3.3	0.003	0.65	0.0	0.04	15.23	0.00	2.410	9.17	1.47	3.2	96.8	0.0	0.18	2.49	0.74	0.81	1.45	13232	1683	5	0	0	0	0	logfile
✔	7BTF	30178	2024-09-25	2020-04-01	2.95	3.30	3.02	3.2	0.009	0.73	0.0	0.05	12.87	0.00	2.262	6.36	0.00	7.0	93.0	0.0	-2.91	0.77	0.89	4.15	3.2	0.003	0.57	0.0	0.04	15.21	0.00	2.454	4.64	1.86	4.4	95.6	0.0	-0.30	0.94	0.77	0.90	3.56	9685	1213	5	0	2	0	0	logfile
✔	6PM0	20382	2024-09-26	2019-07-01	3.1	3.53	—	3.3	0.007	1.03	0.0	0.06	12.78	0.01	2.027	5.10	0.00	4.1	95.9	0.0	-4.55	0.78	0.84	4.35	3.3	0.003	0.65	0.0	0.04	14.13	0.00	2.533	8.06	1.06	3.1	96.9	0.0	0.07	1.10	0.76	0.89	4.06	14080	1730	15	0	20	0	0	logfile
✔	7SK5	25173	2024-09-27	2021-10-19	4.0	4.30	—	4.2	0.004	0.63	0.0	0.06	13.45	0.00	1.998	6.42	0.00	4.7	95.3	0.0	0.50	0.69	0.81	—	4.2	0.019	0.87	0.0	0.04	14.91	0.01	2.352	7.53	1.64	4.6	95.4	0.0	0.18	0.47	0.69	0.80	—	14160	897	7	0	7	0	6928	logfile
✔	7XU2	33456	2024-09-25	2022-05-18	3.2	3.33	3.13	3.2	0.012	0.95	2.0	0.08	14.46	0.00	2.096	2.07	0.86	5.5	94.5	0.0	-1.37	0.84	0.82	3.25	3.2	0.003	0.55	2.0	0.06	14.07	0.00	2.372	2.39	0.55	4.5	95.5	0.0	-0.62	0.34	0.85	0.85	3.18	52218	3321	18	0	66	0	25248	logfile
✔	7YEG	33772	2024-09-25	2022-07-05	3.73	3.29	3.71	3.5	0.002	0.48	0.0	0.04	13.19	0.00	2.191	5.16	0.37	3.1	96.8	0.0	-4.62	0.61	0.57	0.60	3.5	0.004	0.73	1.0	0.04	15.22	0.00	1.958	9.45	1.81	5.0	95.0	0.0	-1.49	1.74	0.58	0.54	1.14	49974	6306	24	0	51	0	0	logfile
✔	8F7R	28908	2024-09-26	2022-11-20	3.28	2.92	3.26	3.4	0.004	0.84	0.0	0.07	8.21	0.01	2.260	4.20	0.00	1.5	98.5	0.0	-0.71	0.54	0.70	1.83	3.3	0.003	0.57	0.0	0.04	13.34	0.00	2.527	8.39	1.74	1.6	98.4	0.0	1.54	1.16	0.57	0.79	2.31	11697	1443	13	0	12	0	0	logfile
✔	7TEi	25846	2024-09-30	2022-01-05	3.4	3.66	3.40	3.5	0.006	0.79	0.0	0.06	17.70	0.01	2.268	2.65	0.00	3.5	96.5	0.0	-0.99	0.84	0.84	2.83	3.5	0.003	0.55	0.0	0.05	13.52	0.00	2.455	3.61	0.56	2.8	97.2	0.0	0.43	1.12	0.86	0.88	2.52	25420	3044	39	0	116	0	0	logfile
✔	7SK8	25176	2024-09-26	2021-10-19	3.3	3.55	—	3.5	0.007	0.73	0.0	0.06	15.20	0.00	2.265	2.62	0.00	5.2	94.8	0.0	-0.08	0.70	0.83	3.30	3.5	0.003	0.51	0.0	0.04	14.26	0.00	2.423	3.93	0.82	4.4	95.6	0.0	0.07	0.30	0.68	0.83	2.85	13389	835	7	0	8	0	6513	logfile
✔	7SK7	25175	2024-09-26	2021-10-19	3.3	3.48	—	3.4	0.004	0.57	0.0	0.05	14.16	0.00	2.002	4.59	0.00	3.6	96.4	0.0	-0.04	0.68	0.80	3.12	3.4	0.003	0.53	0.0	0.04	15.62	0.00	2.356	4.22	0.66	3.0	97.0	0.0	0.39	0.41	0.67	0.80	2.91	13455	854	6	0	2	0	6650	logfile

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