Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P9U	13266	2024-09-23	2021-07-28	3.7	3.88	3.67	3.8	0.003	0.68	0.0	0.04	14.10	0.00	2.188	11.55	0.00	6.8	92.8	0.4	1.01	0.51	0.75	1.02	3.8	0.003	0.76	0.0	0.04	16.33	0.00	2.514	9.81	2.10	6.8	93.0	0.2	0.57	0.40	0.52	0.75	0.97	3943	503	2	0	0	0	0	logfile
✔	6XG6	22174	2024-09-25	2020-06-17	3.2	2.96	3.20	3.0	0.003	0.55	0.0	0.04	15.41	0.00	2.048	8.79	0.00	3.6	96.4	0.0	0.46	0.71	0.77	2.28	3.0	0.003	0.65	0.0	0.04	17.55	0.00	1.991	10.21	2.54	4.5	95.5	0.0	0.13	1.00	0.74	0.83	2.29	9825	1220	4	0	8	0	0	logfile
✔	7ZEL	14690	2024-09-26	2022-03-31	2.8	2.97	2.82	3.0	0.003	0.57	0.0	0.04	12.71	0.00	2.126	4.89	0.00	1.6	98.4	0.0	0.27	0.70	0.82	4.19	3.0	0.005	0.59	0.0	0.04	15.84	0.00	2.245	5.00	1.42	2.3	97.7	0.0	1.02	1.16	0.69	0.84	3.67	13334	1654	4	0	4	0	0	logfile
✘	8SL0	40570	2024-09-23	2023-04-20	3.3	4.17	3.09	3.8	0.003	0.62	0.0	0.05	16.00	0.00	2.201	7.96	0.00	8.4	91.2	0.4	-1.67	0.42	0.83	1.40	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	1737	228	1	0	0	0	0	logfile
✔	6PBY	20295	2024-09-30	2019-06-14	3.67	3.77	—	3.7	0.008	0.93	0.0	0.06	14.38	0.01	2.248	6.20	0.00	4.3	95.7	0.0	-3.45	0.56	0.56	2.08	3.7	0.004	0.69	0.0	0.04	15.86	0.00	2.457	8.96	2.54	3.6	96.4	0.0	0.74	1.13	0.69	0.79	1.52	23832	3268	8	0	0	0	0	logfile
✔	7PSN	13615	2024-09-25	2021-09-23	2.9	3.55	—	3.5	0.009	0.82	0.0	0.04	15.99	0.01	1.923	4.83	0.00	2.7	97.3	0.0	-3.01	0.59	0.78	3.43	3.5	0.003	0.58	0.0	0.04	16.14	0.00	1.994	5.84	2.00	2.1	97.9	0.0	1.49	0.50	0.58	0.79	2.42	9464	1170	4	0	8	0	0	logfile
✔	7RMi	24572	2024-09-24	2021-07-27	3.2	3.78	3.15	3.7	0.004	0.84	0.0	0.05	12.68	0.01	2.296	4.36	0.00	3.4	96.6	0.0	-1.03	0.69	0.72	2.32	3.7	0.003	0.60	0.0	0.04	14.43	0.00	2.413	6.65	1.86	2.8	97.2	0.0	1.16	0.51	0.66	0.77	2.24	7205	960	7	0	1	0	0	logfile
✔	6UY0	20945	2024-09-25	2019-11-09	3.23	3.39	—	3.4	0.014	1.85	0.0	0.08	13.73	0.00	1.861	1.22	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.002	0.53	0.0	0.04	15.45	0.00	2.065	4.75	1.14	2.2	97.8	0.0	2.13	1.13	0.65	0.83	1.33	9684	1210	2	0	7	0	0	logfile
✔	7XiZ	33213	2024-09-23	2022-04-14	3.74	3.27	3.81	3.1	0.013	1.11	0.0	0.06	19.02	0.01	2.386	4.94	0.00	12.8	86.4	0.8	-3.37	0.35	0.71	1.78	3.1	0.005	0.90	0.0	0.05	18.79	0.01	2.502	12.70	8.09	17.4	81.9	0.8	-3.76	1.54	0.37	0.74	1.74	2161	267	2	0	2	0	0	logfile
✔	8iP3	35630	2024-09-26	2023-03-14	2.6	3.21	2.64	3.0	0.002	0.42	0.0	0.04	10.76	0.00	2.255	5.46	0.00	1.9	98.1	0.0	3.79	0.76	0.84	3.68	3.0	0.003	0.48	0.0	0.04	13.86	0.00	2.539	5.15	0.85	1.9	98.1	0.0	3.50	0.33	0.71	0.81	3.63	12868	1595	10	0	13	0	0	logfile
✔	7L8F	23232	2024-09-27	2020-12-31	3.66	3.77	3.54	3.7	0.022	1.69	0.0	0.14	11.25	0.02	2.118	1.45	0.00	1.7	98.3	0.0	0.91	0.70	0.79	2.06	3.7	0.003	0.70	0.0	0.05	13.73	0.00	2.494	6.35	2.37	3.6	96.4	0.0	0.11	2.59	0.72	0.83	2.41	15840	1705	28	0	320	0	0	logfile
✔	7K61	22686	2024-09-28	2020-09-17	2.85	3.27	—	3.1	0.007	0.67	0.0	0.04	27.10	0.00	2.130	5.97	0.00	1.5	98.5	0.0	1.15	0.85	0.86	4.35	3.1	0.004	0.58	0.0	0.03	27.65	0.00	2.526	6.31	1.45	2.1	97.9	0.0	1.91	0.36	0.86	0.88	3.31	17723	1222	12	394	0	0	0	logfile
✔	7E4X	30988	2024-09-30	2021-02-15	3.08	3.19	—	3.1	0.006	0.61	3.0	0.05	13.52	0.00	2.196	9.87	0.00	6.9	92.9	0.2	-3.25	0.79	0.85	3.13	3.1	0.003	0.82	2.0	0.04	15.31	0.00	1.808	7.73	1.23	4.0	96.0	0.0	0.09	0.37	0.79	0.86	2.69	24936	3384	8	0	0	0	0	logfile
✔	7SWD	25471	2024-09-26	2021-11-19	3.59	3.73	—	3.7	0.006	0.77	0.0	0.05	15.80	0.01	2.124	14.79	0.00	4.5	95.5	0.0	-0.91	0.73	0.79	2.33	3.7	0.003	0.73	0.0	0.04	16.23	0.00	2.499	11.04	2.91	4.2	95.8	0.0	-1.04	1.21	0.73	0.79	2.28	12833	1652	14	0	9	0	0	logfile
✔	7JPo	22417	2024-09-27	2020-08-09	3.2	2.55	—	3.2	0.007	1.09	0.0	0.06	15.98	0.01	2.073	2.39	0.00	3.0	97.0	0.0	-1.99	0.79	0.81	2.74	3.2	0.003	0.58	0.0	0.04	17.31	0.00	1.891	4.75	1.39	2.4	97.6	0.0	0.88	1.17	0.80	0.83	2.04	16087	1966	9	0	7	0	0	logfile
✘	8i4A	35167	2024-09-25	2023-01-19	3.4	3.59	3.42	3.6	0.012	0.94	0.0	0.05	15.10	0.01	2.115	13.72	0.00	5.1	94.9	0.0	-1.46	0.61	0.79	2.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	9763	1218	2	0	1	0	0	logfile
✔	7TVZ	26142	2024-09-28	2022-02-06	3.6	3.77	—	3.8	0.005	0.61	0.0	0.04	14.94	0.00	2.203	4.11	0.00	2.8	97.2	0.0	0.35	0.68	0.75	2.02	3.8	0.003	0.62	0.0	0.04	15.83	0.00	2.475	5.17	1.55	2.6	97.4	0.0	0.73	2.30	0.71	0.79	1.96	18659	2340	7	0	9	8	0	logfile
✔	7JPQ	22419	2024-09-26	2020-08-09	3.5	3.56	—	3.5	0.008	1.14	0.0	0.06	14.61	0.01	2.088	2.16	0.00	3.0	97.0	0.0	-2.05	0.71	0.81	2.78	3.5	0.003	0.53	0.0	0.04	16.22	0.00	1.977	4.00	1.47	3.1	96.9	0.0	0.69	0.53	0.72	0.82	1.96	13863	1691	6	0	4	0	0	logfile
✔	7E51	30989	2024-09-30	2021-02-16	3.23	3.40	—	3.4	0.005	0.69	0.0	0.05	14.04	0.00	2.055	9.93	0.00	6.1	93.7	0.2	-3.14	0.81	0.84	2.86	3.4	0.003	0.58	0.0	0.04	15.51	0.00	1.997	7.05	1.47	3.3	96.7	0.0	0.49	1.14	0.82	0.87	2.19	25032	3384	16	0	24	0	0	logfile
✘	7JR9	22444	2024-09-25	2020-08-11	2.95	3.21	—	3.1	0.008	0.82	0.0	0.05	8.26	0.01	2.235	4.11	0.00	3.1	96.9	0.0	-2.53	0.84	0.89	5.25	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	10021	1300	7	0	14	0	0	logfile

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