Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7TVZ	26142	2024-09-28	2022-02-06	3.6	3.77	—	3.8	0.005	0.61	0.0	0.04	14.94	0.00	2.203	4.11	0.00	2.8	97.2	0.0	0.35	0.68	0.75	2.02	3.8	0.003	0.62	0.0	0.04	15.83	0.00	2.475	5.17	1.55	2.6	97.4	0.0	0.73	2.30	0.71	0.79	1.96	18659	2340	7	0	9	8	0	logfile
✔	6U5H	20646	2024-09-24	2019-08-27	4.0	3.67	—	3.7	0.005	1.07	0.0	0.06	8.74	0.01	2.234	9.36	0.39	13.6	86.4	0.0	-5.23	0.41	0.68	—	3.7	0.003	0.76	0.0	0.04	15.66	0.00	2.542	14.08	2.83	11.0	89.0	0.0	-4.51	0.93	0.41	0.68	—	7326	954	3	0	0	0	0	logfile
✔	7Z8Q	14560	2024-09-29	2022-03-18	4.08	4.47	—	4.2	0.003	0.52	0.0	0.04	9.98	0.00	2.012	5.33	0.37	4.0	95.9	0.1	-0.46	0.78	0.70	—	4.2	0.006	0.79	0.0	0.05	12.71	0.01	1.973	12.25	0.00	5.5	94.5	0.0	-0.40	1.02	0.85	0.83	—	22485	2891	6	0	3	0	0	logfile
✔	6KZP	0792	2024-09-25	2019-09-25	3.1	2.67	—	3.0	0.013	1.45	1.0	0.08	16.07	0.01	2.390	10.39	2.44	3.3	96.4	0.3	-4.53	0.59	0.81	3.72	3.1	0.003	0.64	0.0	0.04	16.27	0.00	2.358	5.05	2.66	2.7	97.3	0.0	1.38	0.67	0.59	0.83	2.36	8557	1014	2	0	18	0	0	logfile
✔	5M6S	3451	2024-09-23	2016-10-25	4.8	5.27	—	6.5	0.005	0.84	0.0	0.04	27.97	0.00	2.447	23.24	44.05	7.3	89.6	3.1	-5.37	0.01	0.04	—	5.4	0.003	0.63	0.0	0.03	17.89	0.00	2.491	5.65	0.00	6.2	93.8	0.0	2.23	2.29	0.02	0.07	—	1593	98	1	0	0	0	793	logfile
✔	7W6P	32331	2024-09-24	2021-12-02	3.47	3.79	—	9.6	0.004	0.69	0.0	0.04	13.68	0.00	2.196	14.60	0.11	7.0	93.0	0.0	-0.94	0.22	0.11	0.18	8.5	0.004	0.79	0.0	0.05	15.92	0.00	2.503	16.77	2.44	6.3	93.7	0.0	-0.85	1.95	0.33	0.28	0.86	8408	1083	6	0	1	0	0	logfile
✔	7K61	22686	2024-09-28	2020-09-17	2.85	3.27	—	3.1	0.007	0.67	0.0	0.04	27.10	0.00	2.130	5.97	0.00	1.5	98.5	0.0	1.15	0.85	0.86	4.35	3.1	0.004	0.58	0.0	0.03	27.65	0.00	2.526	6.31	1.45	2.1	97.9	0.0	1.91	0.36	0.86	0.88	3.31	17723	1222	12	394	0	0	0	logfile
✔	6UY0	20945	2024-09-25	2019-11-09	3.23	3.39	—	3.4	0.014	1.85	0.0	0.08	13.73	0.00	1.861	1.22	0.00	4.3	95.7	0.0	-2.56	0.47	0.67	1.98	3.4	0.002	0.53	0.0	0.04	15.45	0.00	2.065	4.75	1.14	2.2	97.8	0.0	2.13	1.13	0.65	0.83	1.33	9684	1210	2	0	7	0	0	logfile
✔	7W8S	32358	2024-09-24	2021-12-08	2.85	3.08	—	3.1	0.003	0.60	0.0	0.04	11.07	0.01	2.102	0.87	3.48	3.4	96.6	0.0	-4.03	0.67	0.82	4.11	3.1	0.003	0.62	0.0	0.04	14.82	0.00	2.414	1.51	2.90	2.9	97.1	0.0	-1.09	0.44	0.67	0.83	3.32	6455	788	4	0	3	0	0	logfile
✔	7SWD	25471	2024-09-26	2021-11-19	3.59	3.73	—	3.7	0.006	0.77	0.0	0.05	15.80	0.01	2.124	14.79	0.00	4.5	95.5	0.0	-0.91	0.73	0.79	2.33	3.7	0.003	0.73	0.0	0.04	16.23	0.00	2.499	11.04	2.91	4.2	95.8	0.0	-1.04	1.21	0.73	0.79	2.28	12833	1652	14	0	9	0	0	logfile
✔	7E4X	30988	2024-09-30	2021-02-15	3.08	3.19	—	3.1	0.006	0.61	3.0	0.05	13.52	0.00	2.196	9.87	0.00	6.9	92.9	0.2	-3.25	0.79	0.85	3.13	3.1	0.003	0.82	2.0	0.04	15.31	0.00	1.808	7.73	1.23	4.0	96.0	0.0	0.09	0.37	0.79	0.86	2.69	24936	3384	8	0	0	0	0	logfile
✔	6UM7	20819	2024-09-28	2019-10-09	3.5	4.23	—	3.5	0.018	2.07	12.0	0.18	16.47	0.03	2.132	7.28	0.89	5.0	94.2	0.9	0.01	0.75	0.66	0.34	3.5	0.005	0.84	0.0	0.05	13.85	0.00	2.459	9.40	1.12	6.1	93.3	0.7	-0.47	1.36	0.79	0.82	2.20	20334	2490	30	0	78	0	0	logfile
✔	6PBY	20295	2024-09-30	2019-06-14	3.67	3.77	—	3.7	0.008	0.93	0.0	0.06	14.38	0.01	2.248	6.20	0.00	4.3	95.7	0.0	-3.45	0.56	0.56	2.08	3.7	0.004	0.69	0.0	0.04	15.86	0.00	2.457	8.96	2.54	3.6	96.4	0.0	0.74	1.13	0.69	0.79	1.52	23832	3268	8	0	0	0	0	logfile
✔	6UM6	20818	2024-09-28	2019-10-09	4.3	4.83	—	4.5	0.018	2.20	15.0	0.13	14.45	0.03	1.987	3.06	0.28	6.0	93.0	1.0	-0.99	0.69	0.66	—	4.5	0.004	0.88	0.0	0.05	12.32	0.00	2.296	11.75	0.14	7.0	92.5	0.5	-0.75	1.03	0.78	0.81	—	20133	2484	30	0	63	0	0	logfile
✔	6PMi	20394	2024-09-26	2019-07-02	3.86	4.66	—	4.1	0.012	1.26	0.0	0.06	16.10	0.01	1.949	12.35	0.24	10.7	88.9	0.4	-4.48	0.69	0.51	0.20	4.1	0.004	0.74	0.0	0.04	17.60	0.00	1.477	15.57	2.41	10.0	89.8	0.1	-2.27	1.01	0.86	0.77	0.13	57985	3453	10	110	4	0	28610	logfile
✔	7PSN	13615	2024-09-25	2021-09-23	2.9	3.55	—	3.5	0.009	0.82	0.0	0.04	15.99	0.01	1.923	4.83	0.00	2.7	97.3	0.0	-3.01	0.59	0.78	3.43	3.5	0.003	0.58	0.0	0.04	16.14	0.00	1.994	5.84	2.00	2.1	97.9	0.0	1.49	0.50	0.58	0.79	2.42	9464	1170	4	0	8	0	0	logfile
✔	7LA4	23245	2024-09-24	2021-01-05	3.3	3.51	—	3.5	0.006	0.84	1.0	0.06	16.13	0.00	2.100	16.95	1.91	9.6	89.9	0.5	-4.02	0.75	0.82	3.50	3.5	0.005	0.74	0.0	0.05	16.14	0.00	2.106	12.35	2.70	10.1	89.9	0.0	-3.07	1.11	0.72	0.83	2.88	8281	1052	10	0	17	4	0	logfile
✔	6iDF	9648	2024-09-26	2018-09-09	2.7	2.83	—	2.9	0.008	1.17	0.0	0.06	15.40	0.01	2.279	3.96	0.44	6.8	93.0	0.1	-4.02	0.66	0.82	3.23	2.9	0.003	0.68	0.0	0.04	15.94	0.00	2.496	5.12	2.19	5.4	94.6	0.0	-0.15	1.27	0.66	0.85	2.23	11188	1363	15	0	28	0	0	logfile
✔	6A91	6996	2024-09-26	2018-07-11	3.2	3.32	—	3.3	0.009	1.14	0.0	0.06	13.00	0.01	2.238	6.00	1.22	7.8	91.6	0.6	-6.38	0.60	0.82	4.21	3.3	0.003	0.68	0.0	0.04	15.61	0.00	2.423	4.46	3.14	7.5	92.3	0.1	-0.63	0.71	0.65	0.86	2.84	11182	1380	6	0	10	3	0	logfile
✔	7U2N	26316	2024-09-26	2022-02-24	2.8	3.30	—	3.4	0.007	0.80	0.0	0.05	12.41	0.00	2.034	23.96	0.00	8.6	91.4	0.0	-4.23	0.52	0.81	5.21	3.3	0.003	0.75	0.0	0.04	14.92	0.00	2.504	9.73	1.45	4.5	95.5	0.0	-0.69	1.10	0.51	0.81	3.99	14080	1725	15	0	20	0	0	logfile

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