Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6ZY6	11551	2024-09-26	2020-07-30	4.1	4.75	4.09	4.6	0.010	1.07	2.0	0.08	13.75	0.01	2.304	5.48	0.00	1.6	98.4	0.0	-0.70	0.83	0.77	—	4.6	0.002	0.60	0.0	0.04	16.06	0.00	2.515	6.73	0.00	4.0	96.0	0.0	0.31	2.42	0.85	0.81	—	13504	1520	8	60	2	0	0	logfile
✔	6KV5	9577	2024-09-26	2019-09-03	4.6	4.71	—	4.6	0.004	0.82	0.0	0.05	9.59	0.01	2.225	7.54	0.41	8.6	91.3	0.1	-4.90	0.73	0.68	—	4.6	0.003	0.77	0.0	0.05	12.65	0.00	2.377	13.97	0.00	7.0	93.0	0.1	-1.57	1.84	0.76	0.73	—	13532	1679	3	0	0	0	0	logfile
✘	6V3E	21034	2024-09-24	2019-11-25	4.4	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	50850	2311	20	1528	0	0	0	logfile
✔	6SHS	10204	2024-09-24	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.68	0.00	2.416	3.63	0.00	15.4	84.6	0.0	-5.52	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7CTF	30463	2024-09-27	2020-08-18	4.8	4.92	—	4.8	0.009	1.36	0.0	0.06	19.00	0.01	2.264	6.48	8.84	6.9	93.1	0.1	-4.50	0.77	0.73	—	4.7	0.003	0.82	0.0	0.05	14.97	0.00	2.346	15.09	0.06	6.3	93.7	0.0	-1.09	3.94	0.79	0.78	—	14504	1775	7	0	2	0	0	logfile
✔	3JB7	6404	2024-09-27	2015-08-03	4.0	4.13	—	4.1	0.007	0.76	3.0	0.05	11.60	0.00	0.793	10.58	1.13	3.9	95.9	0.2	-2.17	0.76	0.85	—	4.1	0.003	0.67	0.0	0.04	15.90	0.00	2.468	8.41	3.05	2.9	97.0	0.1	0.46	0.82	0.78	0.85	—	14176	1733	8	11	3	0	0	logfile
✔	6R23	4708	2024-09-23	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.70	0.0	0.03	16.71	0.00	2.619	6.54	0.00	6.7	93.3	0.0	0.80	3.40	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	7Z2A	14459	2024-09-26	2022-02-26	4.3	4.49	—	4.3	0.012	1.59	2.0	0.09	14.75	0.01	0.925	8.38	0.48	2.8	97.0	0.2	0.00	0.80	0.62	—	4.2	0.003	0.60	0.0	0.04	14.42	0.00	1.842	49.99	0.00	4.1	95.8	0.1	0.34	1.79	0.90	0.80	—	12244	1201	5	0	4	0	2765	logfile
✔	7MFE	23814	2024-09-24	2021-04-09	4.07	3.82	—	3.8	0.002	0.59	0.0	0.04	15.26	0.00	1.387	18.00	0.41	6.6	93.4	0.0	-2.56	0.63	0.64	—	3.8	0.005	0.78	0.0	0.04	15.38	0.01	1.888	14.69	0.00	7.2	92.8	0.0	-1.11	0.58	0.62	0.64	—	6844	859	4	0	2	0	0	logfile
✔	7CZ6	30507	2024-09-23	2020-09-07	4.1	4.04	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	61.25	0.00	8.1	91.9	0.0	-1.66	0.68	0.64	—	4.1	0.004	0.83	0.0	0.05	11.31	0.01	2.353	11.27	0.19	5.8	94.2	0.0	-1.88	0.91	0.66	0.74	—	4535	630	5	0	0	0	0	logfile
✘	6HZ8	0314	2024-09-28	2018-10-22	4.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	67654	4120	26	6	12	0	33440	logfile
✔	7Z0L	14427	2024-09-26	2022-02-23	4.0	4.43	4.11	4.3	0.005	0.95	0.0	0.06	15.67	0.01	2.223	7.63	0.65	5.5	94.5	0.0	-0.67	0.58	0.49	—	4.4	0.003	0.69	0.0	0.04	15.20	0.00	2.359	9.86	2.84	4.4	95.6	0.0	0.45	0.98	0.59	0.52	—	13752	856	9	0	12	0	6713	logfile
✔	5LiJ	4054	2024-09-23	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.11	0.0	0.04	9.68	0.00	2.554	11.83	0.00	32.7	67.3	0.0	-5.72	0.60	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	7WD8	32434	2024-09-23	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.71	0.0	0.04	12.43	0.00	2.558	10.69	0.00	4.5	95.3	0.2	-0.06	1.60	0.63	0.66	—	4029	524	4	0	0	0	0	logfile
✔	7WLC	32581	2024-09-23	2022-01-13	4.0	4.24	—	4.1	0.003	0.70	0.0	0.04	13.71	0.00	2.198	15.62	0.00	6.1	93.9	0.0	-1.35	0.71	0.77	—	4.1	0.004	0.82	0.0	0.05	16.16	0.00	2.515	15.16	2.79	6.8	93.2	0.0	-1.46	0.51	0.72	0.78	—	3307	430	3	0	0	0	0	logfile
✔	7F46	31444	2024-09-24	2021-06-17	4.79	5.15	—	3.3	0.006	0.84	0.0	0.05	13.32	0.01	2.218	12.18	0.00	8.9	91.1	0.0	-2.90	0.77	0.60	—	4.4	0.003	0.74	0.0	0.05	13.13	0.01	2.467	14.19	0.00	6.1	93.9	0.0	-1.59	1.12	0.79	0.64	—	6564	842	6	0	2	0	0	logfile
✔	7BZX	30262	2024-09-23	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.005	1.11	0.0	0.05	8.68	0.00	2.286	14.37	0.00	21.3	78.7	0.0	-4.55	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✘	5UCY	8539	2024-09-30	2016-12-22	4.6	4.99	—	4.6	0.011	1.21	3.0	0.06	13.21	0.01	0.244	89.25	0.68	11.3	88.3	0.5	-4.47	0.50	0.32	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	25005	2610	12	3	6	0	4467	logfile
✔	6PZB	20533	2024-09-24	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.004	0.71	0.0	0.04	8.84	0.00	2.526	6.86	0.00	6.3	93.7	0.0	0.83	0.59	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile
✔	6XoW	22282	2024-09-24	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.39	0.01	1.991	24.14	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.004	0.77	0.0	0.04	13.33	0.01	2.446	22.13	0.23	4.1	95.9	0.0	-0.08	0.82	0.91	0.82	—	7711	966	1	0	0	0	0	logfile

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