Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6P4H	20249	2024-09-30	2019-05-27	3.2	3.13	3.20	3.1	0.010	1.43	0.0	0.10	22.89	0.00	2.179	2.56	2.17	6.6	92.8	0.7	-3.62	0.67	0.75	2.61	3.1	0.006	0.74	0.0	0.04	23.03	0.01	2.186	8.81	3.46	4.8	95.2	0.0	-0.69	0.59	0.78	0.82	2.04	79374	4862	36	1900	0	0	0	logfile
✔	6P4G	20248	2024-09-30	2019-05-27	3.1	3.17	3.36	3.1	0.010	1.45	4.0	0.10	23.13	0.00	2.232	2.63	3.36	8.9	90.2	0.9	-4.06	0.67	0.74	2.52	3.1	0.003	0.63	0.0	0.04	23.11	0.00	2.167	9.27	4.34	4.8	95.2	0.0	-1.02	1.37	0.75	0.79	1.90	79374	4862	36	1900	0	0	0	logfile
✔	6DDD	7867	2024-09-30	2018-05-10	3.1	3.19	—	3.1	0.008	0.85	0.0	0.05	23.61	0.01	1.998	16.48	0.05	10.6	89.4	0.0	-4.62	0.78	0.84	3.48	3.1	0.004	0.64	1.0	0.04	23.28	0.00	2.122	7.13	3.07	6.1	93.8	0.0	-2.10	2.17	0.79	0.85	2.74	79118	2568	28	2750	1	0	0	logfile
✔	6ZVH	11456	2024-09-30	2020-07-24	2.9	3.10	2.84	2.8	0.008	0.95	1.0	0.05	21.80	0.01	1.992	4.95	0.00	4.9	94.9	0.2	-2.07	0.54	0.88	3.23	2.8	0.005	0.70	0.0	0.04	21.94	0.01	1.867	6.54	1.60	7.9	92.0	0.1	-0.80	1.10	0.54	0.89	2.71	79014	5074	43	1815	33	0	0	logfile
✔	6J6N	0691	2024-09-30	2019-01-15	3.86	3.99	—	3.8	0.008	1.02	1.0	0.09	17.31	0.01	1.820	15.60	2.51	5.1	94.2	0.8	-3.41	0.60	0.63	1.26	3.8	0.003	0.73	0.0	0.04	18.29	0.00	1.854	12.59	2.60	5.4	94.4	0.1	0.17	1.63	0.65	0.72	1.03	78937	8982	47	544	14	0	0	logfile
✔	7SYo	25535	2024-09-30	2021-11-25	4.6	3.80	4.55	3.8	0.003	0.85	0.0	0.04	22.28	0.01	2.226	5.43	0.05	5.1	94.9	0.0	-2.93	0.62	0.68	—	3.7	0.002	0.60	0.0	0.04	22.16	0.00	2.004	10.09	0.02	5.1	94.9	0.0	-1.31	1.10	0.62	0.69	—	78846	4891	38	1863	2	0	0	logfile
✔	7SYG	25527	2024-09-30	2021-11-25	4.3	3.38	4.15	3.2	0.003	0.74	0.0	0.04	22.16	0.01	2.257	4.87	0.00	5.1	94.8	0.0	-2.54	0.65	0.65	—	3.2	0.005	0.78	0.0	0.04	22.35	0.01	2.155	13.72	0.05	8.2	91.8	0.0	-1.82	1.10	0.66	0.68	—	78773	4891	38	1859	2	0	0	logfile
✔	7SYK	25531	2024-09-30	2021-11-25	4.2	3.51	4.09	3.3	0.003	0.83	0.0	0.04	22.20	0.01	2.255	5.27	0.02	5.9	94.0	0.0	-2.72	0.67	0.67	—	3.3	0.004	0.73	0.0	0.04	22.19	0.01	2.099	12.80	0.07	9.4	90.6	0.0	-1.76	1.44	0.68	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYi	25529	2024-09-30	2021-11-25	4.5	3.59	4.35	3.4	0.004	0.87	0.0	0.04	22.09	0.01	2.213	5.70	0.00	6.6	93.3	0.0	-2.89	0.67	0.65	—	3.4	0.003	0.66	0.0	0.04	22.14	0.00	2.039	12.65	0.00	7.1	92.8	0.0	-1.97	1.42	0.68	0.67	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYN	25534	2024-09-30	2021-11-25	4.0	3.26	3.82	3.2	0.002	0.49	0.0	0.03	21.99	0.00	2.115	9.69	0.00	4.8	95.2	0.0	-0.83	0.64	0.72	—	3.2	0.004	0.68	0.0	0.04	22.38	0.01	2.147	9.50	2.85	7.9	92.1	0.0	-1.32	1.04	0.65	0.74	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYM	25533	2024-09-30	2021-11-25	4.8	3.64	4.44	3.5	0.003	0.83	1.0	0.04	22.25	0.01	2.245	5.29	0.00	5.3	94.7	0.0	-2.78	0.63	0.68	—	3.5	0.002	0.57	0.0	0.03	22.01	0.00	2.156	8.53	0.05	4.2	95.8	0.0	-1.27	1.06	0.64	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYJ	25530	2024-09-30	2021-11-25	4.8	3.85	4.49	3.7	0.003	0.79	0.0	0.04	21.81	0.01	2.240	5.37	0.02	6.1	93.9	0.0	-2.97	0.71	0.63	—	3.6	0.004	0.72	0.0	0.04	22.06	0.01	1.919	15.34	0.00	8.6	91.4	0.0	-1.73	1.31	0.74	0.69	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYH	25528	2024-09-30	2021-11-25	4.6	3.30	4.36	3.2	0.003	0.79	2.0	0.04	21.81	0.01	2.250	5.14	0.02	5.7	94.2	0.0	-2.97	0.62	0.60	—	3.2	0.005	0.80	0.0	0.04	22.08	0.01	2.063	14.38	0.00	8.6	91.4	0.0	-1.78	1.17	0.63	0.63	—	78761	4891	38	1859	2	0	0	logfile
✔	7SYL	25532	2024-09-30	2021-11-25	4.5	3.40	4.38	3.3	0.004	0.87	0.0	0.04	22.27	0.01	2.191	6.19	0.02	6.6	93.4	0.0	-3.03	0.63	0.59	—	3.3	0.004	0.69	0.0	0.04	22.28	0.01	2.110	13.21	0.02	7.1	92.9	0.0	-1.96	1.07	0.66	0.63	—	78748	4891	38	1859	2	0	0	logfile
✔	8EUP	24410	2024-09-30	2022-10-19	3.1	3.34	—	3.2	0.004	0.56	0.0	0.04	22.51	0.00	2.108	12.23	0.40	5.3	94.6	0.1	-0.11	0.72	0.69	1.81	3.2	0.004	0.60	0.0	0.04	22.14	0.00	2.006	10.63	3.38	4.6	95.3	0.1	0.29	0.39	0.74	0.72	1.68	78722	6156	41	1623	1	0	0	logfile
✔	8HDR	34678	2024-09-30	2022-11-06	3.66	3.32	3.68	3.3	0.005	0.66	0.0	0.05	13.59	0.00	2.116	12.84	8.30	9.0	91.0	0.0	-2.65	0.60	0.74	1.89	3.3	0.006	0.78	1.0	0.05	16.20	0.00	1.529	10.58	6.55	8.3	91.7	0.0	-2.18	0.84	0.63	0.78	2.11	78708	10296	54	0	0	0	0	logfile
✔	8oW1	17227	2024-09-30	2023-04-26	3.7	5.06	5.11	3.9	0.003	0.65	0.0	0.04	18.38	0.00	1.800	10.59	1.37	3.0	97.0	0.0	0.32	0.75	0.49	0.28	3.9	0.005	0.74	0.0	0.04	19.35	0.00	2.406	17.34	1.46	3.6	96.3	0.0	0.67	4.52	0.88	0.75	0.43	78671	8932	42	306	0	0	0	logfile
✔	5WVE	6690	2024-09-30	2016-12-24	4.4	4.90	—	5.1	0.008	1.34	7.0	0.08	19.50	0.01	1.493	69.05	16.86	7.1	89.5	3.4	-0.75	0.49	0.15	—	4.5	0.003	0.83	0.0	0.04	13.68	0.00	1.841	18.85	0.00	7.2	92.2	0.6	-1.71	2.03	0.79	0.59	—	78605	9766	39	0	21	0	0	logfile
✔	6SJ6	10212	2024-09-29	2019-08-12	3.23	3.28	—	3.2	0.010	1.05	0.0	0.06	23.89	0.01	1.886	4.33	0.14	17.7	82.2	0.2	-6.09	0.78	0.78	3.43	3.2	0.005	0.75	0.0	0.04	23.47	0.01	1.856	5.90	3.91	11.8	88.2	0.0	-3.81	2.00	0.79	0.79	2.48	78296	2611	27	2697	59	0	0	logfile
✔	6iD0	9646	2024-09-30	2018-09-07	2.9	3.04	—	3.0	0.009	1.39	19.0	0.10	16.69	0.01	1.607	10.97	1.46	7.0	91.9	1.0	-2.86	0.63	0.68	2.82	3.0	0.006	0.85	1.0	0.05	18.01	0.01	1.944	9.84	3.54	6.7	93.0	0.3	0.32	0.75	0.69	0.80	2.30	78004	10389	48	405	16	0	0	logfile

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