Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	3J06	5185	2024-09-26	2011-04-26	3.3	2.88	—	3.5	0.011	2.34	441.0	0.15	21.60	0.01	1.607	79.64	14.71	21.1	65.4	13.5	-7.24	0.56	0.80	1.90	3.3	0.004	0.89	1.0	0.04	20.14	0.01	2.278	13.90	4.74	7.2	91.2	1.6	-2.59	1.24	0.55	0.78	2.12	62916	7595	98	147	0	0	0	logfile
✔	7Q2S	13782	2024-09-26	2021-10-26	3.7	3.23	—	3.3	0.010	1.40	0.0	0.08	12.76	0.01	1.216	18.47	0.00	8.6	90.7	0.7	-4.24	0.45	0.63	1.80	3.2	0.003	0.79	0.0	0.04	18.07	0.00	2.051	13.34	4.85	4.1	95.9	0.0	-1.88	1.07	0.51	0.68	1.68	62377	7497	98	147	0	0	0	logfile
✔	6J3Z	9776	2024-09-30	2019-01-07	3.6	3.78	—	3.6	0.019	1.82	4.0	0.15	20.86	0.01	1.392	13.61	0.28	4.3	95.7	0.0	-5.08	0.80	0.81	3.43	3.6	0.004	0.72	0.0	0.04	17.47	0.00	1.463	12.35	2.27	3.6	96.4	0.0	0.20	0.75	0.80	0.82	2.67	74619	6984	97	0	978	0	0	logfile
✔	7JJJ	22354	2024-09-25	2020-07-26	4.5	4.63	4.47	4.5	0.020	1.79	0.0	0.13	10.01	0.01	2.377	0.90	0.07	2.0	98.0	0.0	0.68	0.79	0.80	—	4.5	0.004	0.68	0.0	0.05	11.76	0.00	2.444	8.91	0.03	3.9	96.1	0.0	0.04	1.43	0.80	0.83	—	54614	6674	92	0	182	0	0	logfile
✘	8BQW	16189	2024-09-27	2023-01-18	2.3	2.12	2.14	2.2	0.008	1.14	0.0	0.07	8.96	0.00	0.052	12.77	0.00	9.6	90.4	0.0	-3.78	0.46	0.75	7.06	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	17385	2310	90	0	270	135	0	logfile
✔	6J3Y	9775	2024-09-29	2019-01-07	3.3	3.49	—	3.4	0.019	1.77	4.0	0.14	19.66	0.01	1.372	10.02	0.32	4.1	95.9	0.0	-5.09	0.77	0.84	3.85	3.4	0.003	0.67	0.0	0.04	16.85	0.00	2.219	10.71	1.40	3.5	96.5	0.0	0.50	0.65	0.78	0.87	2.78	70136	6984	90	0	428	0	0	logfile
✔	7V7i	31772	2024-09-24	2021-08-21	3.3	4.09	—	3.8	0.005	0.67	0.0	0.05	14.45	0.00	2.128	8.29	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.004	0.58	0.0	0.04	14.27	0.00	2.436	4.92	1.25	4.8	95.1	0.1	-0.15	0.33	0.87	0.87	1.94	51072	6228	84	0	174	0	0	logfile
✔	7V7H	31771	2024-09-24	2021-08-21	3.2	4.02	—	3.7	0.004	0.62	0.0	0.05	14.69	0.00	2.162	7.22	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.003	0.60	0.0	0.05	14.35	0.00	2.455	5.38	0.94	4.6	95.3	0.0	-0.25	1.15	0.85	0.85	1.81	50949	6209	84	0	174	0	0	logfile
✔	7V7J	31773	2024-09-24	2021-08-21	3.4	4.17	—	3.8	0.005	0.64	0.0	0.05	14.70	0.00	2.144	9.62	0.00	6.1	93.8	0.1	-0.39	0.86	0.85	2.06	3.8	0.006	0.65	0.0	0.05	14.21	0.00	2.407	6.65	1.18	6.2	93.7	0.1	-0.50	0.32	0.87	0.87	1.74	51072	6228	84	0	174	0	0	logfile
✔	8DVD	27735	2024-09-29	2022-07-28	4.12	4.71	4.34	4.3	0.007	1.07	0.0	0.07	24.44	0.00	1.932	5.05	0.69	8.0	91.9	0.1	-0.76	0.79	0.74	—	4.3	0.005	0.92	0.0	0.05	13.11	0.01	2.389	11.38	0.00	8.4	91.5	0.1	-1.56	1.77	0.84	0.81	—	20804	2137	83	0	302	0	0	logfile
✔	7JSV	22460	2024-09-29	2020-08-16	3.9	3.98	—	4.0	0.020	2.10	0.0	0.10	14.87	0.01	2.348	6.75	0.00	0.0	100.0	0.0	1.16	0.61	0.80	2.43	4.0	0.004	0.80	0.0	0.04	16.90	0.00	2.467	11.92	2.77	1.3	98.7	0.0	2.20	0.87	0.65	0.84	3.08	22140	2706	82	0	41	0	0	logfile
✘	7SPB	24769	2024-09-26	2021-11-02	3.31	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.19	—	—	2.11	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.89	—	—	—	2.08	57408	7488	78	0	0	0	0	logfile
✔	8ToX	41461	2024-09-29	2023-08-04	2.3	3.05	2.35	2.8	0.005	0.75	0.0	0.05	19.29	0.00	2.205	3.52	0.51	2.9	97.1	0.0	0.74	0.82	0.85	4.45	2.8	0.005	0.91	2.0	0.05	14.88	0.00	1.978	6.47	1.90	2.9	97.1	0.0	0.83	0.39	0.83	0.90	4.36	22008	2490	78	0	159	369	0	logfile
✘	7SPi	24771	2024-09-26	2021-11-02	2.97	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.43	—	—	1.75	—	—	—	—	—	—	—	—	—	—	—	—	—	-0.60	—	—	—	1.87	57408	7488	78	0	0	0	0	logfile
✔	8HFQ	34724	2024-09-25	2022-11-11	2.64	2.27	2.58	2.5	0.012	1.31	1.0	0.06	14.44	0.01	1.919	13.48	0.45	1.7	98.2	0.1	-0.95	0.76	0.80	3.80	2.4	0.004	0.71	0.0	0.04	17.03	0.01	2.187	10.34	1.91	1.5	98.5	0.0	2.05	1.61	0.79	0.84	4.01	54193	6851	76	0	54	0	0	logfile
✔	6TH3	10502	2024-09-26	2019-11-18	4.0	4.17	4.09	4.0	0.007	1.10	0.0	0.05	10.47	0.01	2.268	4.52	0.00	16.5	83.5	0.0	-5.42	0.64	0.56	—	4.0	0.005	0.88	0.0	0.05	15.40	0.01	2.412	8.54	2.38	12.6	87.4	0.0	-1.88	1.68	0.74	0.78	—	60600	7800	75	0	0	0	0	logfile
✘	8B3Q	15833	2024-09-30	2022-09-16	2.58	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-1.09	—	—	3.67	—	—	—	—	—	—	—	—	—	—	—	—	—	6.42	—	—	—	-0.26	25095	3395	75	0	0	0	0	logfile
✔	7RRP	24665	2024-09-28	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.003	0.57	0.0	0.04	14.38	0.00	2.069	1.76	0.91	2.4	97.6	0.0	4.27	0.07	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✘	7A6B	11669	2024-09-29	2020-08-25	1.33	1.21	—	1.3	0.015	1.60	24.0	0.12	16.78	0.01	1.893	4.97	4.17	1.2	98.8	0.0	2.52	0.52	0.65	9.13	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	41494	4152	72	0	32	3854	0	logfile
✔	7N65	24195	2024-09-29	2021-06-07	4.15	4.35	—	4.2	0.011	1.36	0.0	0.07	20.89	0.01	1.935	36.06	4.29	15.2	84.6	0.2	-4.44	0.78	0.77	—	4.2	0.004	0.93	0.0	0.05	12.75	0.01	2.197	18.07	0.05	11.4	88.6	0.0	-2.89	1.52	0.77	0.76	—	21525	2454	72	0	189	0	0	logfile

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