Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8UXJ	42766	2024-09-28	2023-11-09	2.71	3.03	2.75	3.0	0.003	0.57	0.0	0.04	11.93	0.00	2.072	7.23	0.04	1.5	98.5	0.0	2.76	0.51	0.82	3.58	3.0	0.004	0.54	0.0	0.04	14.88	0.00	2.358	4.90	1.30	0.8	99.2	0.0	3.78	0.37	0.54	0.85	3.19	69696	9720	36	0	0	0	0	logfile
✔	8V3T	42953	2024-09-29	2023-11-28	2.7	2.31	2.67	2.4	0.003	0.60	0.0	0.04	15.51	0.00	2.218	6.75	2.54	2.4	97.6	0.0	-0.10	0.60	0.78	2.56	2.3	0.004	0.70	0.0	0.05	17.72	0.00	2.422	5.72	5.31	4.5	95.5	0.0	-0.91	3.65	0.63	0.80	2.67	76362	9720	42	0	0	0	0	logfile
✔	8V3X	42959	2024-09-29	2023-11-28	2.2	2.09	2.18	2.1	0.004	0.73	0.0	0.05	17.26	0.00	2.197	5.23	1.88	3.1	96.9	0.0	0.01	0.64	0.78	5.27	2.1	0.004	0.70	0.0	0.05	17.89	0.00	2.449	5.78	3.36	4.0	96.0	0.0	-0.22	0.79	0.63	0.77	5.09	75948	9696	42	0	0	0	0	logfile
✔	6QSU	4629	2024-09-29	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.65	0.0	0.05	13.44	0.00	1.918	4.58	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.003	0.59	0.0	0.05	16.60	0.00	1.934	4.77	1.69	3.2	96.8	0.0	0.48	1.15	0.72	0.86	4.12	75758	9684	60	0	36	1178	0	logfile
✔	6ZJA	11233	2024-09-30	2020-06-28	2.0	2.10	2.09	2.1	0.006	0.86	0.0	0.06	14.31	0.01	1.974	0.60	1.37	4.1	95.9	0.0	-0.40	0.79	0.87	6.97	2.1	0.003	0.68	0.0	0.05	16.09	0.00	1.868	1.30	0.68	4.2	95.8	0.0	0.23	0.39	0.78	0.90	6.59	77951	9684	60	0	36	3191	0	logfile
✔	5MQ0	3541	2024-09-30	2016-12-19	4.17	4.40	—	4.2	0.010	1.54	21.0	0.11	17.52	0.01	0.679	7.92	2.73	7.7	91.4	0.9	-2.01	0.68	0.56	—	4.1	0.004	0.73	0.0	0.04	17.00	0.00	1.880	15.41	0.00	5.7	94.3	0.1	0.03	2.10	0.74	0.74	—	77441	9673	53	448	99	0	0	logfile
✔	7LFH	23302	2024-09-30	2021-01-17	4.2	3.38	—	4.1	0.004	0.95	12.0	0.05	13.99	0.01	2.078	29.03	0.00	13.1	86.8	0.1	-2.88	0.61	0.49	—	4.1	0.003	0.88	0.0	0.05	14.12	0.00	2.370	19.89	0.05	11.0	89.0	0.0	-2.51	1.03	0.65	0.66	—	76884	9672	12	0	0	0	0	logfile
✔	6SB3	10134	2024-09-29	2019-07-18	3.5	3.63	3.51	3.7	0.002	0.56	0.0	0.04	13.00	0.00	2.104	13.24	0.00	4.9	95.1	0.0	-2.84	0.68	0.71	1.27	3.6	0.006	0.83	6.0	0.05	15.82	0.01	2.125	15.00	4.18	6.2	93.8	0.0	-1.46	1.22	0.71	0.76	0.97	75712	9664	32	0	32	0	0	logfile
✔	6Z6o	11101	2024-09-30	2020-05-28	3.8	4.70	—	4.2	0.006	0.92	0.0	0.05	15.43	0.01	2.104	8.05	0.96	7.9	92.1	0.0	-3.37	0.84	0.81	0.94	4.2	0.003	0.67	0.0	0.04	16.39	0.00	1.995	10.86	1.76	6.2	93.8	0.0	-0.20	0.52	0.84	0.81	0.82	77516	9628	24	0	8	0	0	logfile
✔	7U4T	26334	2024-09-29	2022-03-01	3.6	3.59	3.47	3.6	0.006	0.76	0.0	0.05	14.15	0.01	1.919	11.93	0.00	6.3	93.7	0.0	-0.29	0.65	0.66	1.52	3.5	0.004	0.74	1.0	0.04	16.35	0.00	1.938	11.92	2.39	4.8	95.2	0.0	0.60	0.76	0.67	0.69	1.45	71598	9610	40	0	9	0	0	logfile
✘	7ZHJ	14733	2024-09-29	2022-04-06	3.53	3.10	3.39	3.3	0.003	0.55	0.0	0.04	13.02	0.00	2.151	8.47	0.04	3.6	96.4	0.0	-1.71	0.73	0.78	2.05	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	74346	9528	33	0	0	0	0	logfile
✔	8W19	43716	2024-09-29	2024-02-15	4.4	4.24	4.38	4.1	0.004	0.80	0.0	0.05	14.56	0.01	2.202	6.88	0.01	4.1	95.9	0.0	-0.95	0.56	0.76	—	4.1	0.004	0.75	0.0	0.05	14.02	0.00	2.297	11.90	0.02	4.4	95.6	0.0	-0.53	1.38	0.56	0.82	—	76760	9525	15	0	0	0	0	logfile
✔	7JTK	22475	2024-09-28	2020-08-17	3.2	3.51	—	3.2	0.005	0.75	2.0	0.05	13.43	0.00	1.951	9.29	0.51	3.2	96.8	0.0	-0.30	0.80	0.74	2.43	3.2	0.003	0.59	0.0	0.04	15.02	0.00	2.419	6.12	1.07	2.7	97.3	0.0	0.65	0.37	0.87	0.84	2.05	72807	9482	43	0	38	0	0	logfile
✔	8C8M	16484	2024-09-28	2023-01-20	2.87	3.24	—	3.0	0.014	1.57	24.0	0.08	13.69	0.01	1.144	9.49	0.74	3.8	96.2	0.0	-1.25	0.89	0.88	4.10	3.0	0.004	0.75	5.0	0.05	15.30	0.00	1.868	5.74	1.22	2.7	97.3	0.0	-0.52	1.19	0.89	0.87	3.92	70506	9480	6	0	0	0	0	logfile
✔	7VTQ	32120	2024-09-29	2021-10-30	3.55	4.59	—	3.2	0.004	0.68	0.0	0.04	15.12	0.00	2.136	14.14	0.05	5.6	94.4	0.0	-0.05	0.74	0.61	0.73	3.3	0.003	0.73	0.0	0.04	15.97	0.00	2.427	14.00	0.57	3.8	96.2	0.0	0.58	0.55	0.87	0.81	0.80	76572	9468	24	0	24	0	0	logfile
✔	5JUY	8178	2024-09-29	2016-05-10	4.1	4.28	—	4.1	0.009	1.23	0.0	0.05	11.01	0.00	1.447	16.11	0.71	6.6	93.0	0.4	-3.18	0.76	0.55	—	4.1	0.005	0.76	0.0	0.04	12.87	0.00	2.404	11.56	0.00	6.5	93.4	0.1	-0.89	0.94	0.84	0.70	—	76058	9461	32	0	14	0	0	logfile
✔	8io9	35612	2024-09-29	2023-03-10	2.36	3.18	2.44	2.8	0.005	0.60	0.0	0.04	12.28	0.00	1.987	8.65	0.48	3.5	96.5	0.0	0.34	0.86	0.84	4.54	2.8	0.002	0.51	0.0	0.04	12.70	0.00	2.023	6.17	0.61	3.5	96.5	0.0	1.01	0.30	0.86	0.84	3.69	75744	9456	24	0	36	0	0	logfile
✔	8ioE	35617	2024-09-29	2023-03-11	2.86	3.66	2.96	3.4	0.004	0.49	0.0	0.04	10.43	0.00	2.048	8.82	0.78	3.4	96.6	0.0	0.02	0.87	0.85	4.01	3.3	0.002	0.58	0.0	0.04	12.20	0.00	2.027	7.78	0.88	3.2	96.8	0.0	1.02	0.37	0.86	0.84	3.12	75404	9454	24	0	24	0	0	logfile
✔	6W2D	21525	2024-09-29	2020-03-05	4.0	4.10	—	4.0	0.006	0.74	0.0	0.05	13.33	0.01	1.362	15.60	5.51	5.0	94.6	0.4	-2.57	0.34	0.54	—	4.0	0.004	0.84	0.0	0.05	17.19	0.01	2.252	13.63	3.88	6.1	93.8	0.0	-1.16	1.72	0.42	0.79	—	74272	9430	21	0	0	0	0	logfile
✔	7B9S	12105	2024-09-29	2020-12-14	3.4	4.02	—	3.6	0.006	1.03	6.0	0.06	12.82	0.01	2.271	2.93	0.37	3.8	96.2	0.0	-0.79	0.77	0.79	1.17	3.6	0.003	0.71	0.0	0.04	14.62	0.00	2.468	9.18	1.90	3.4	96.6	0.0	1.07	0.65	0.78	0.82	0.87	72030	9426	30	0	0	0	0	logfile

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