Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7KoD	22972	2024-09-27	2020-11-08	1.655	2.30	—	1.9	0.001	0.33	0.0	0.03	8.49	0.00	2.288	0.80	0.00	1.1	98.9	0.0	6.14	0.91	0.91	8.16	1.9	0.004	0.50	0.0	0.03	13.79	0.00	2.412	1.44	0.36	0.6	99.4	0.0	5.22	0.82	0.87	0.93	7.98	68186	4128	48	0	0	1727	32643	logfile
✔	8BMT	16125	2024-09-27	2022-11-10	2.5	2.69	2.49	2.5	0.003	0.62	0.0	0.05	15.40	0.00	1.922	10.73	1.12	1.8	98.2	0.0	1.86	0.83	0.85	3.16	2.6	0.003	0.71	0.0	0.05	16.32	0.00	1.992	11.61	1.19	1.5	98.5	0.0	1.45	1.15	0.84	0.87	2.81	65711	8680	56	0	42	1339	0	logfile
✔	7SCA	25031	2024-09-25	2021-09-27	2.1	2.23	2.15	2.2	0.011	1.14	7.0	0.07	14.95	0.01	2.057	5.44	0.78	1.0	99.0	0.0	2.17	0.79	0.85	5.74	2.2	0.003	0.62	0.0	0.04	16.40	0.00	2.427	7.14	1.19	1.1	98.9	0.0	2.74	1.09	0.79	0.85	5.36	55437	6836	116	0	54	1325	0	logfile
✔	8BLC	16106	2024-09-25	2022-11-09	2.7	2.79	2.65	2.7	0.005	0.51	0.0	0.04	17.03	0.00	2.062	11.39	1.44	0.9	99.1	0.0	1.13	0.81	0.83	2.54	2.7	0.003	0.49	0.0	0.04	16.99	0.00	2.010	9.22	0.85	1.1	98.9	0.0	1.44	1.00	0.82	0.86	2.43	55646	7336	42	0	42	1298	0	logfile
✘	8WiY	37572	2024-09-27	2023-09-25	2.31	2.56	2.31	2.6	0.014	1.72	0.0	0.10	19.56	0.02	0.000	10.57	11.25	2.5	97.5	0.0	-1.41	0.56	0.70	4.51	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15486	1722	36	0	24	1248	0	logfile
✔	8BMD	16118	2024-09-25	2022-11-10	2.8	2.93	2.78	2.8	0.004	0.60	0.0	0.04	16.85	0.00	2.030	9.24	1.77	1.8	98.2	0.0	0.48	0.83	0.86	2.79	2.8	0.003	0.54	0.0	0.04	16.80	0.00	2.033	9.82	2.00	1.1	98.9	0.0	1.34	0.23	0.83	0.87	2.47	55532	7336	42	0	42	1184	0	logfile
✔	6QSU	4629	2024-09-29	2019-02-22	2.4	2.64	2.56	2.6	0.006	0.65	0.0	0.05	13.44	0.00	1.918	4.58	0.61	4.6	95.4	0.0	0.27	0.81	0.87	4.68	2.6	0.003	0.59	0.0	0.05	16.60	0.00	1.934	4.77	1.69	3.2	96.8	0.0	0.48	1.15	0.72	0.86	4.12	75758	9684	60	0	36	1178	0	logfile
✘	8WJ2	37576	2024-09-27	2023-09-25	2.35	2.51	2.35	2.6	0.015	1.95	12.0	0.10	18.14	0.03	0.000	8.58	11.26	2.1	97.5	0.4	-2.08	0.58	0.73	4.22	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14844	1722	36	0	12	1176	0	logfile
✔	8UD9	42148	2024-09-24	2023-09-28	2.04	2.16	2.10	2.1	0.004	0.56	0.0	0.04	16.94	0.00	2.235	2.23	0.15	1.7	98.3	0.0	1.27	0.81	0.90	6.09	2.1	0.006	0.70	0.0	0.05	17.37	0.01	2.395	4.07	1.35	1.6	98.4	0.0	1.43	0.39	0.82	0.91	5.98	49955	6264	58	0	2	1120	0	logfile
✔	7P8W	13256	2024-09-27	2021-07-23	2.2	2.34	—	2.3	0.014	1.79	4.0	0.09	14.82	0.01	2.340	1.55	0.75	3.8	96.0	0.2	-1.36	0.85	0.92	6.91	2.3	0.003	0.63	0.0	0.04	15.52	0.00	2.571	3.35	0.40	2.8	97.2	0.0	0.89	1.12	0.85	0.91	6.29	17668	2008	12	0	8	1110	0	logfile
✔	5K12	8194	2024-09-26	2016-05-17	1.8	2.40	—	2.8	0.008	0.97	0.0	0.06	10.27	0.01	2.051	19.79	0.82	3.8	96.2	0.0	-2.53	0.66	0.74	5.80	2.9	0.005	0.62	0.0	0.04	15.46	0.01	2.404	5.38	0.75	2.1	97.9	0.0	1.89	0.90	0.71	0.89	3.29	14856	1764	12	0	0	1086	0	logfile
✘	8WiZ	37573	2024-09-27	2023-09-25	2.2	2.38	2.23	2.4	0.015	1.78	6.0	0.10	20.31	0.03	0.000	13.55	10.83	2.8	97.2	0.0	-1.91	0.59	0.73	3.75	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15306	1722	36	0	18	1068	0	logfile
✔	7A5V	11657	2024-09-29	2020-08-22	1.7	1.73	1.69	1.8	0.014	1.59	0.0	0.09	14.87	0.02	0.000	2.35	0.48	2.2	97.8	0.0	-0.05	0.61	0.79	6.90	1.8	0.003	0.63	0.0	0.05	13.97	0.00	0.000	4.30	0.52	0.5	99.5	0.0	1.92	0.34	0.71	0.86	6.10	21155	2275	30	0	85	1015	0	logfile
✔	8EL9	28225	2024-09-28	2022-09-23	2.27	2.39	2.29	2.4	0.003	0.65	0.0	0.05	17.09	0.01	2.197	3.40	1.23	2.5	97.5	0.0	0.05	0.75	0.85	4.95	2.4	0.005	0.77	0.0	0.05	17.22	0.01	2.413	5.18	1.28	2.7	97.3	0.0	0.04	0.23	0.75	0.86	5.18	17429	1990	12	0	8	1015	0	logfile
✔	6ZGL	11210	2024-09-27	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.59	0.0	0.04	15.67	0.00	2.561	3.81	1.12	1.4	98.6	0.0	3.29	0.72	0.75	0.83	7.15	15760	1848	24	0	0	964	0	logfile
✘	8WJ0	37574	2024-09-26	2023-09-25	2.24	2.40	2.24	2.5	0.015	1.72	18.0	0.10	18.81	0.03	0.000	12.28	13.66	1.1	98.9	0.0	-1.94	0.57	0.71	3.76	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	14370	1698	36	0	24	888	0	logfile
✔	8RDU	19075	2024-09-26	2023-12-08	2.3	2.53	—	2.6	0.006	0.89	0.0	0.06	19.92	0.01	1.739	3.45	0.77	2.7	97.3	0.0	-1.13	0.69	0.77	4.20	2.6	0.005	0.70	0.0	0.04	21.41	0.01	1.835	7.82	2.18	2.6	97.4	0.0	0.89	0.86	0.68	0.81	3.26	61430	6103	71	526	33	862	0	logfile
✘	7XMU	33305	2024-09-27	2022-04-26	2.3	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15294	1842	18	0	36	822	0	logfile
✘	7XMV	33306	2024-09-27	2022-04-27	2.6	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	15228	1842	18	0	30	810	0	logfile
✔	8CAD	16524	2024-09-27	2023-01-24	2.85	2.57	2.81	2.7	0.003	0.59	0.0	0.05	11.54	0.00	2.115	5.66	0.00	1.8	98.2	0.0	0.82	0.69	0.81	3.81	2.7	0.005	0.78	0.0	0.04	14.28	0.00	2.134	3.61	1.28	2.9	97.1	0.0	0.74	0.61	0.70	0.85	3.83	64084	3816	30	0	78	766	31062	logfile

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