Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	5LJo	4061	2024-09-30	2016-07-19	4.9	7.28	—	5.9	0.014	1.69	1.0	0.08	11.01	0.01	2.147	5.45	0.15	9.4	86.8	3.8	-2.52	0.69	0.58	—	5.9	0.003	0.70	0.0	0.04	12.74	0.01	2.280	11.55	0.00	12.8	86.8	0.4	-2.75	1.31	0.80	0.80	—	24947	1624	5	0	0	0	12255	logfile
✔	6PoM	20416	2024-09-23	2019-07-04	4.9	5.01	—	5.0	0.003	0.64	0.0	0.03	25.63	0.00	2.075	3.10	0.00	0.0	0.0	0.0	—	0.61	0.64	—	4.9	0.010	1.26	0.0	0.06	27.15	0.01	1.943	51.03	0.00	0.0	0.0	0.0	—	1.76	0.74	0.79	—	4937	0	2	230	0	0	0	logfile
✔	8oSL	17160	2024-09-26	2023-04-19	4.9	8.34	6.27	6.8	0.005	0.80	0.0	0.05	28.01	0.00	2.363	2.30	0.00	1.1	98.9	0.0	-0.07	0.81	0.71	—	6.9	0.007	0.78	0.0	0.04	35.40	0.01	2.259	99.58	0.00	10.5	89.5	0.0	-0.63	3.47	0.87	0.82	—	13541	1441	14	294	0	0	301	logfile
✔	8JTD	36641	2024-09-27	2023-06-21	4.9	4.51	4.64	4.6	0.005	0.93	0.0	0.07	17.49	0.00	2.048	20.29	0.00	3.8	96.1	0.1	-0.29	0.63	0.55	—	4.6	0.006	1.01	0.0	0.06	12.93	0.01	2.269	26.10	0.00	6.7	93.3	0.0	-1.21	0.69	0.68	0.65	—	17275	1978	51	0	128	0	0	logfile
✔	7KPW	22990	2024-09-23	2020-11-12	4.9	5.04	4.74	4.9	0.009	1.54	4.0	0.10	1.89	0.01	2.279	3.61	0.00	3.9	94.9	1.2	4.09	0.75	0.67	—	4.9	0.002	0.67	0.0	0.04	4.82	0.00	2.474	0.66	0.00	9.6	89.8	0.6	0.64	2.03	0.82	0.81	—	4313	865	1	0	0	0	0	logfile
✔	8SAL	40273	2024-09-28	2023-04-01	4.9	5.54	4.74	5.0	0.005	0.89	0.0	0.05	13.67	0.01	2.065	4.56	0.00	8.4	91.4	0.1	-2.31	0.76	0.70	—	5.0	0.003	0.80	0.0	0.05	13.32	0.01	2.365	16.56	0.00	8.0	91.9	0.1	-1.88	2.47	0.79	0.77	—	18435	2343	12	0	0	0	0	logfile
✔	7Z8L	14556	2024-09-27	2022-03-17	4.9	4.50	4.38	4.0	0.012	1.30	0.0	0.09	9.68	0.01	2.296	0.29	0.00	1.2	98.8	0.0	1.37	0.76	0.77	—	4.0	0.004	0.63	0.0	0.04	6.87	0.00	1.809	2.27	0.00	5.1	94.9	0.0	1.52	0.68	0.81	0.84	—	16513	3311	3	0	5	0	0	logfile
✔	8oSH	17153	2024-09-24	2023-04-18	4.9	5.59	5.45	4.9	0.006	0.94	0.0	0.06	3.38	0.00	2.299	5.83	0.00	11.2	88.7	0.1	-0.55	0.82	0.82	—	4.9	0.003	0.63	0.0	0.04	4.47	0.00	2.431	3.78	0.00	14.2	85.8	0.0	-0.91	0.54	0.83	0.85	—	6770	1372	5	0	0	0	0	logfile
✔	7S0E	24788	2024-09-24	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.003	0.76	0.0	0.05	13.07	0.00	2.383	13.28	0.00	8.3	91.5	0.2	-1.71	1.45	0.78	0.72	—	8248	1076	3	0	0	0	0	logfile
✔	7AFK	11768	2024-09-28	2020-09-19	4.9	5.45	4.72	3.0	0.007	0.89	1.0	0.05	23.87	0.00	1.519	42.37	0.00	8.4	91.6	0.0	-2.88	0.87	0.80	—	2.7	0.005	0.71	0.0	0.04	23.02	0.01	1.855	28.47	0.00	6.0	94.0	0.0	-1.03	0.78	0.88	0.85	—	18521	1108	11	456	13	0	0	logfile
✔	7ELE	31182	2024-09-25	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	21.73	0.01	2.210	17.86	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.5	0.003	0.75	0.0	0.04	18.77	0.00	2.130	20.07	0.00	8.2	91.6	0.2	-1.75	1.31	0.88	0.76	—	10733	1137	2	83	0	0	0	logfile
✔	3iZK	5247	2024-09-25	2010-10-29	4.9	4.48	—	7.1	0.014	1.48	16.0	0.08	12.45	0.02	2.461	2.38	0.77	2.0	97.5	0.4	-1.62	0.65	0.48	—	6.9	0.004	0.81	0.0	0.05	13.33	0.01	2.379	23.35	0.00	3.7	96.3	0.0	-0.43	2.00	0.82	0.76	—	58448	7856	16	0	0	0	0	logfile
✔	7K9L	22754	2024-09-25	2020-09-29	4.9	4.39	—	4.7	0.007	1.19	0.0	0.07	15.28	0.01	2.254	9.45	3.96	3.5	96.5	0.0	-1.98	0.67	0.78	—	4.6	0.004	0.80	0.0	0.04	13.72	0.00	2.403	17.71	0.00	5.3	94.7	0.0	0.08	0.93	0.69	0.79	—	10472	1372	4	0	0	0	0	logfile
✔	6oCE	20017	2024-09-25	2019-03-23	4.9	4.11	—	4.0	0.006	0.73	0.0	0.04	8.07	0.01	1.868	8.56	0.00	9.9	90.1	0.0	-4.37	0.45	0.60	—	4.0	0.003	0.72	0.0	0.04	12.38	0.01	2.552	8.78	0.00	12.6	87.4	0.0	-2.58	1.11	0.46	0.62	—	11228	1378	2	0	0	0	0	logfile
✔	6SKM	10228	2024-09-25	2019-08-16	4.9	5.09	4.66	4.9	0.004	0.64	0.0	0.04	9.23	0.00	1.449	9.83	0.18	1.4	98.6	0.0	-1.03	0.68	0.74	—	4.9	0.004	0.81	0.0	0.05	13.11	0.01	2.292	16.94	0.18	3.0	97.0	0.0	0.06	2.75	0.70	0.80	—	10336	1320	6	0	0	0	0	logfile
✔	8SLi	40578	2024-09-29	2023-04-21	4.9	5.15	4.96	4.9	0.004	0.57	0.0	0.04	9.81	0.00	2.188	11.13	0.00	6.5	93.5	0.0	-2.65	0.70	0.80	—	4.9	0.003	0.58	0.0	0.04	9.99	0.00	2.421	5.62	0.00	7.6	92.4	0.0	0.55	1.67	0.71	0.81	—	20996	3576	8	0	8	0	0	logfile
✔	6R23	4708	2024-09-23	2019-03-15	4.9	4.57	—	4.6	0.006	1.07	0.0	0.05	16.56	0.01	2.332	7.52	0.00	7.9	92.1	0.0	-4.61	0.60	0.75	—	4.6	0.003	0.70	0.0	0.03	16.71	0.00	2.619	6.54	0.00	6.7	93.3	0.0	0.80	3.40	0.60	0.73	—	1518	182	2	0	0	0	0	logfile
✔	7BWA	30231	2024-09-26	2020-04-14	4.9	5.10	4.70	4.8	0.004	0.77	0.0	0.05	15.31	0.00	1.970	41.05	0.00	13.4	86.6	0.0	-4.15	0.80	0.64	—	4.8	0.004	0.79	0.0	0.05	14.15	0.00	2.026	17.59	0.00	9.4	90.6	0.0	-3.09	1.67	0.79	0.60	—	11670	1444	4	0	0	0	0	logfile
✔	3J6F	5896	2024-09-26	2014-02-19	4.9	4.97	—	4.9	0.021	2.64	64.0	0.14	14.01	0.01	2.017	5.57	0.14	3.1	96.3	0.6	-1.05	0.62	0.66	—	4.9	0.003	0.76	0.0	0.05	14.91	0.01	1.878	16.77	0.12	3.0	97.0	0.0	0.57	2.79	0.68	0.81	—	60903	7686	45	9	18	36	0	logfile
✔	8EJ5	28176	2024-09-23	2022-09-16	4.9	4.58	4.63	4.6	0.012	1.52	1.0	0.09	12.69	0.01	2.466	13.82	3.27	2.0	97.2	0.8	1.40	0.43	0.64	—	4.5	0.004	0.77	0.0	0.05	13.65	0.00	2.338	14.79	0.00	4.0	95.7	0.3	0.08	1.83	0.46	0.75	—	5818	727	4	0	0	0	0	logfile

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