Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7ZDQ	14666	2024-09-23	2022-03-29	3.2	2.77	3.10	2.9	0.003	0.56	0.0	0.04	15.11	0.00	2.212	6.47	0.15	2.3	97.7	0.0	1.48	0.71	0.81	3.08	3.1	0.003	0.51	0.0	0.04	16.02	0.00	2.473	5.07	0.74	2.9	97.1	0.0	1.40	0.24	0.72	0.84	2.77	6264	763	3	0	3	0	0	logfile
✔	7E9F	31030	2024-09-29	2021-03-04	4.0	4.14	3.17	4.0	0.004	0.74	0.0	0.04	28.02	0.01	2.264	5.87	0.36	3.0	97.0	0.0	-4.61	0.83	0.75	—	4.0	0.003	0.70	0.0	0.04	28.22	0.00	2.021	14.70	3.75	3.9	96.1	0.0	-0.59	1.31	0.85	0.79	—	13279	1057	12	249	2	0	0	logfile
✔	6D7L	7823	2024-09-25	2018-04-25	4.0	4.10	3.93	3.9	0.004	0.86	0.0	0.05	7.65	0.01	2.273	4.18	0.00	8.5	91.5	0.0	-3.90	0.73	0.72	—	3.9	0.004	0.95	0.0	0.05	15.09	0.00	2.330	11.98	1.87	9.6	90.4	0.0	-0.66	2.99	0.76	0.74	—	9172	1152	4	0	0	0	0	logfile
✔	6X59	22046	2024-09-27	2020-05-25	2.98	3.23	—	3.1	0.006	0.84	0.0	0.04	27.58	0.01	2.103	10.75	7.57	6.2	93.7	0.2	-2.07	0.84	0.87	3.08	3.1	0.005	0.89	2.0	0.04	27.43	0.01	2.049	8.76	2.90	5.2	94.8	0.0	0.74	0.48	0.86	0.89	2.88	14963	1123	12	290	1	0	0	logfile
✔	8TDo	41172	2024-09-23	2023-07-04	3.1	3.56	2.70	3.5	0.005	0.56	0.0	0.05	13.25	0.01	2.175	16.36	0.00	3.4	96.6	0.0	-3.41	0.50	0.84	5.15	3.4	0.003	0.52	0.0	0.05	15.07	0.00	2.461	8.36	1.90	6.5	93.5	0.0	-3.54	0.35	0.51	0.84	5.19	2892	372	4	0	0	0	0	logfile
✔	7RSH	24670	2024-09-26	2021-08-11	3.0	2.76	—	3.0	0.009	1.43	0.0	0.05	19.07	0.02	2.221	8.11	0.58	8.0	92.0	0.0	-0.72	0.65	0.80	2.41	3.0	0.003	0.65	0.0	0.04	18.04	0.00	2.598	6.08	2.11	6.2	93.8	0.0	1.23	0.42	0.63	0.81	2.44	13744	1604	8	0	60	0	0	logfile
✔	6PM6	20389	2024-09-26	2019-07-01	2.9	3.37	—	3.4	0.005	0.92	0.0	0.06	11.65	0.01	2.335	5.13	0.00	4.9	95.1	0.0	-4.86	0.54	0.80	4.25	3.4	0.004	0.76	0.0	0.04	14.67	0.00	2.525	6.66	2.77	5.3	94.7	0.0	-0.72	1.09	0.50	0.79	3.78	14100	1735	15	0	15	0	0	logfile
✔	6LHV	0900	2024-09-27	2019-12-10	4.59	4.86	—	4.4	0.010	1.38	0.0	0.05	5.37	0.00	1.654	9.63	0.00	0.0	0.0	0.0	—	0.70	0.59	—	4.4	0.010	1.33	0.0	0.04	6.42	0.00	2.267	12.16	0.00	0.0	0.0	0.0	—	3.57	0.84	0.81	—	8456	0	3	0	1707	0	0	logfile
✔	8DNS	27579	2024-09-25	2022-07-11	3.22	3.05	3.26	3.1	0.006	1.46	0.0	0.09	11.07	0.01	2.425	5.60	3.33	2.4	97.6	0.0	-0.08	0.66	0.78	2.68	3.1	0.005	0.66	0.0	0.05	15.01	0.00	2.543	8.82	2.31	3.3	96.7	0.0	-0.25	1.22	0.68	0.83	2.96	10092	1332	4	0	0	0	0	logfile
✔	6VFE	21160	2024-09-26	2020-01-03	3.9	4.13	—	4.0	0.003	0.75	0.0	0.05	15.07	0.00	2.120	12.81	0.03	8.3	91.7	0.0	-3.02	0.83	0.74	1.40	4.0	0.004	0.76	0.0	0.05	17.16	0.00	2.463	10.82	2.71	11.5	88.5	0.0	-3.59	0.57	0.84	0.76	1.22	61908	7887	33	0	0	0	0	logfile
✔	7SHL	25128	2024-09-25	2021-10-09	3.5	3.40	—	2.9	0.003	0.65	0.0	0.04	14.14	0.00	2.087	15.79	0.00	3.9	96.1	0.0	0.05	0.83	0.78	1.51	2.9	0.003	0.72	0.0	0.04	16.41	0.00	2.495	12.80	1.53	3.5	96.5	0.0	0.36	0.95	0.83	0.78	1.28	9207	1138	6	0	1	0	0	logfile
✔	8ASG	15615	2024-09-26	2022-08-19	3.2	3.40	3.28	3.3	0.003	0.77	0.0	0.05	15.82	0.01	2.114	6.64	0.29	4.8	95.2	0.0	-1.13	0.73	0.82	2.47	3.3	0.003	0.66	0.0	0.04	16.85	0.00	1.959	8.31	0.96	5.5	94.5	0.0	-0.12	0.39	0.72	0.84	2.26	12687	1544	5	17	1	0	0	logfile
✔	7F3Q	31434	2024-09-24	2021-06-16	3.3	3.52	—	3.4	0.006	0.81	0.0	0.06	13.82	0.01	1.848	10.11	2.14	5.6	94.3	0.1	-0.94	0.81	0.84	3.49	3.4	0.004	0.66	0.0	0.04	15.50	0.00	2.344	5.85	2.82	4.6	95.4	0.0	-0.13	1.13	0.83	0.90	3.59	8003	1050	7	0	2	0	0	logfile
✔	7STo	25435	2024-09-30	2021-11-14	3.15	3.45	—	3.3	0.007	0.88	0.0	0.04	11.85	0.00	2.289	1.13	0.15	2.3	97.7	0.0	1.91	0.68	0.82	3.05	3.3	0.003	0.46	0.0	0.04	13.55	0.00	2.347	1.99	0.91	3.3	96.6	0.1	1.93	1.23	0.72	0.87	2.62	25210	1580	4	0	10	0	12268	logfile
✔	8W8F	37353	2024-09-23	2023-09-02	4.0	4.51	7.49	4.1	0.002	0.54	0.0	0.04	14.71	0.00	1.923	8.55	3.62	4.8	95.1	0.1	-1.11	0.75	0.57	—	4.1	0.007	0.87	2.0	0.05	16.41	0.00	1.981	15.75	1.59	4.5	95.4	0.1	-0.12	0.92	0.88	0.81	—	46667	5587	26	95	10	0	0	logfile
✔	8QCX	18336	2024-09-23	2023-08-28	3.1	3.36	3.25	3.4	0.003	0.50	0.0	0.04	13.43	0.01	2.275	4.35	0.00	1.0	99.0	0.0	1.06	0.57	0.81	3.18	3.4	0.003	0.56	0.0	0.04	15.79	0.00	2.635	6.44	1.13	1.0	99.0	0.0	2.92	1.21	0.53	0.79	2.32	3283	422	1	0	0	0	0	logfile
✔	6RAL	4779	2024-09-25	2019-04-06	3.5	3.74	3.59	3.7	0.006	1.19	4.0	0.07	14.57	0.01	2.079	8.24	0.00	4.6	95.4	0.1	-5.95	0.79	0.82	1.90	3.6	0.003	0.94	1.0	0.04	16.42	0.00	1.971	7.66	2.21	3.2	96.8	0.0	-1.54	0.62	0.78	0.82	1.84	10127	1275	5	0	4	0	0	logfile
✔	6NM9	9398	2024-09-29	2019-01-10	3.38	3.86	—	3.8	0.008	0.77	3.0	0.05	16.06	0.00	1.884	18.70	0.29	12.6	87.3	0.1	-4.62	0.72	0.76	1.93	3.8	0.004	0.71	0.0	0.04	17.81	0.00	1.981	11.46	3.45	8.7	91.3	0.0	-1.61	1.62	0.74	0.79	1.61	22916	2640	10	50	4	0	0	logfile
✔	7F6i	31481	2024-09-24	2021-06-25	2.8	2.85	—	2.8	0.008	0.92	1.0	0.07	13.56	0.00	2.227	6.36	0.50	3.8	96.2	0.0	0.20	0.71	0.82	2.94	2.8	0.003	0.60	0.0	0.04	15.54	0.00	2.595	6.02	2.11	2.9	97.1	0.0	0.91	0.44	0.71	0.84	1.90	7361	915	6	0	3	0	0	logfile
✔	7YP7	33995	2024-09-26	2022-08-02	3.1	3.27	3.27	3.2	0.007	0.95	0.0	0.06	15.19	0.01	1.823	5.31	1.44	7.7	91.7	0.6	-4.81	0.78	0.83	3.48	3.2	0.003	0.67	0.0	0.04	16.30	0.00	2.540	5.05	3.00	4.7	95.0	0.3	-0.91	1.27	0.81	0.86	2.78	7909	1007	5	0	0	0	0	logfile

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