Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EFD	31084	2024-09-23	2021-03-21	1.77	1.78	1.82	1.9	0.033	3.16	12.0	0.09	15.32	0.02	0.001	1.61	2.15	1.7	97.5	0.8	-0.54	0.74	0.82	5.75	1.9	0.004	0.76	0.0	0.05	14.63	0.00	2.592	3.49	0.00	4.0	96.0	0.0	0.85	0.48	0.80	0.84	6.22	4004	480	8	0	4	156	0	logfile
✔	8F2B	28812	2024-09-25	2022-11-07	2.0	1.79	2.02	1.9	0.004	0.55	0.0	0.04	14.23	0.00	2.278	5.13	1.32	1.0	99.0	0.0	-2.02	0.54	0.74	4.60	1.9	0.003	0.59	0.0	0.04	15.90	0.00	2.469	5.23	1.42	2.2	97.8	0.0	1.49	0.94	0.55	0.75	4.98	10360	1273	13	0	16	31	0	logfile
✔	8P77	17520	2024-09-23	2023-05-30	1.8	1.83	1.92	1.9	0.006	0.58	0.0	0.04	16.68	0.00	2.228	5.35	1.08	1.3	98.5	0.2	2.01	0.68	0.79	5.73	1.9	0.004	0.65	0.0	0.04	16.94	0.01	2.424	6.03	1.26	1.3	98.5	0.2	1.82	0.74	0.68	0.80	5.44	5271	630	7	0	2	137	0	logfile
✔	8ooA	17008	2024-09-24	2023-04-04	3.18	1.83	3.09	2.8	0.008	1.08	0.0	0.06	27.96	0.01	2.299	5.05	0.00	1.5	98.5	0.0	-2.10	0.75	0.76	3.22	2.8	0.004	0.60	0.0	0.04	28.26	0.00	2.558	8.11	2.03	1.2	98.8	0.0	2.01	1.03	0.77	0.76	2.63	8405	529	8	204	0	0	0	logfile
✔	8oRM	17129	2024-09-23	2023-04-14	1.9	1.83	1.88	1.9	0.004	0.58	0.0	0.04	16.75	0.00	2.236	3.99	0.90	1.6	98.2	0.2	1.88	0.70	0.81	5.96	1.9	0.003	0.61	0.0	0.04	16.69	0.01	2.606	4.68	1.62	1.1	98.7	0.2	1.66	0.21	0.70	0.82	5.77	5341	632	7	0	2	210	0	logfile
✘	8P6X	17510	2024-09-23	2023-05-30	1.9	1.85	1.92	1.9	0.005	0.63	0.0	0.04	16.39	0.00	2.211	7.57	0.72	2.3	97.6	0.2	1.71	0.68	0.78	5.12	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	5284	631	7	0	2	144	0	logfile
✔	8G6E	29764	2024-09-24	2023-02-15	2.18	1.87	2.24	2.0	0.004	0.60	0.0	0.04	17.67	0.00	1.943	3.00	0.63	2.0	98.0	0.0	0.88	0.69	0.85	5.05	2.0	0.005	0.68	0.0	0.05	18.12	0.00	2.476	4.47	2.52	1.9	98.1	0.0	1.02	0.39	0.70	0.85	5.05	52266	6490	62	0	6	218	0	logfile
✔	6ZGL	11210	2024-09-27	2020-06-19	1.9	1.87	—	1.9	0.013	1.55	0.0	0.12	15.52	0.01	2.196	9.00	3.73	1.1	98.9	0.0	0.13	0.73	0.83	7.03	1.9	0.003	0.59	0.0	0.04	15.67	0.00	2.561	3.81	1.12	1.4	98.6	0.0	3.29	0.72	0.75	0.83	7.15	15760	1848	24	0	0	964	0	logfile
✔	8G17	29664	2024-09-25	2023-02-01	1.98	1.88	1.96	2.0	0.004	0.64	0.0	0.05	15.70	0.00	2.172	5.82	0.76	3.3	96.7	0.0	0.61	0.51	0.71	6.43	2.0	0.003	0.67	0.0	0.05	15.97	0.01	2.415	1.20	1.14	3.0	97.0	0.0	0.45	1.21	0.72	0.87	6.83	10016	1336	4	0	0	0	0	logfile
✔	8Q8R	18258	2024-09-23	2023-08-18	2.1	1.89	2.15	1.9	0.011	1.82	6.0	0.10	11.11	0.01	2.505	0.00	0.00	11.0	89.0	0.0	-1.41	0.39	0.83	5.91	1.9	0.004	0.75	0.0	0.05	16.88	0.00	2.597	4.39	3.28	7.7	92.3	0.0	-1.65	1.06	0.44	0.88	5.86	3468	456	6	0	0	0	0	logfile
✔	8Q9F	18279	2024-09-24	2023-08-20	1.91	1.89	1.88	1.9	0.011	1.78	0.0	0.09	10.30	0.01	2.515	0.00	0.00	0.2	99.8	0.0	-2.15	0.31	0.73	7.64	1.9	0.003	0.63	0.0	0.05	14.58	0.00	2.484	2.35	0.56	2.5	97.5	0.0	-2.15	1.18	0.43	0.85	7.32	6390	414	6	0	0	0	3258	logfile
✔	6S61	10101	2024-09-28	2019-07-02	1.84	1.89	1.85	1.9	0.011	1.36	0.0	0.06	12.21	0.01	0.312	2.62	1.29	1.8	98.2	0.0	3.69	0.77	0.86	8.46	1.9	0.004	0.62	0.0	0.04	14.89	0.00	2.160	2.50	0.65	1.3	98.7	0.0	4.32	0.78	0.80	0.90	8.67	71060	4128	72	0	30	3854	32904	logfile
✔	8P76	17519	2024-09-23	2023-05-30	2.0	1.89	2.02	2.0	0.005	0.61	0.0	0.04	16.64	0.00	2.258	6.57	0.90	1.3	98.5	0.2	1.97	0.66	0.79	5.30	2.0	0.003	0.64	0.0	0.04	16.72	0.00	2.397	5.98	1.08	2.1	97.7	0.2	1.80	0.26	0.66	0.79	5.31	5261	630	7	0	2	151	0	logfile
✔	8ooF	17012	2024-09-23	2023-04-05	2.9	1.91	3.05	2.8	0.004	0.71	0.0	0.05	13.65	0.01	2.043	2.60	0.00	2.9	97.1	0.0	-0.80	0.84	0.83	4.92	2.8	0.003	0.64	0.0	0.04	16.34	0.00	1.995	5.08	2.36	3.1	96.9	0.0	0.59	1.96	0.85	0.84	4.32	4479	556	3	0	2	0	0	logfile
✔	8PKF	17737	2024-09-23	2023-06-26	2.3673	1.91	2.30	2.6	0.013	1.73	0.0	0.12	11.30	0.01	2.355	0.12	0.00	2.3	97.7	0.0	-2.77	0.43	0.75	4.64	2.6	0.004	0.62	0.0	0.05	16.55	0.00	2.646	5.92	2.56	4.5	95.5	0.0	-2.25	1.95	0.53	0.84	4.83	4308	552	6	0	0	0	0	logfile
✔	7P6A	13223	2024-09-23	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.006	0.74	0.0	0.06	14.08	0.00	2.571	4.76	0.64	4.7	95.3	0.0	-2.53	0.83	0.54	0.90	7.92	4166	540	10	0	0	76	0	logfile
✔	7MiJ	23853	2024-09-29	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	20.53	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.003	0.67	0.0	0.04	19.22	0.00	2.445	4.28	1.54	3.9	96.1	0.0	0.83	0.61	0.77	0.82	5.17	23010	2556	12	0	38	328	0	logfile
✔	8BGW	16041	2024-09-26	2022-10-28	2.2	1.96	2.24	2.2	0.016	2.06	2.0	0.09	19.30	0.02	1.923	16.69	3.84	6.1	93.4	0.5	-3.60	0.68	0.80	5.25	2.2	0.005	0.82	0.0	0.04	16.31	0.00	1.825	14.97	1.02	4.1	95.9	0.0	1.02	0.39	0.76	0.84	4.64	12927	1500	6	0	25	449	0	logfile
✔	8PNV	17786	2024-09-26	2023-07-02	2.048	1.96	2.05	2.0	0.004	0.66	0.0	0.04	17.46	0.01	2.040	3.74	2.87	1.1	98.9	0.0	2.57	0.79	0.86	5.51	2.0	0.004	0.64	0.0	0.04	16.29	0.00	2.491	3.10	2.63	1.5	98.5	0.0	2.14	1.01	0.79	0.87	5.49	13098	1626	30	0	6	522	0	logfile
✔	7P13	13154	2024-09-26	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	2.1	0.002	0.44	0.0	0.03	17.09	0.00	2.472	15.03	1.44	2.3	97.7	0.0	5.41	0.51	0.83	0.87	3.25	13727	1743	7	0	0	0	154	logfile

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