Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8i3U	35156	2024-09-23	2023-01-18	3.6	3.90	3.39	3.8	0.002	0.54	0.0	0.04	9.20	0.00	2.198	8.85	1.09	1.9	98.1	0.0	-0.52	0.64	0.75	3.16	3.8	0.003	0.64	0.0	0.04	15.09	0.01	2.548	10.95	1.36	3.5	96.5	0.0	-0.37	0.74	0.68	0.77	2.35	3408	437	4	0	1	0	0	logfile
✔	8i3S	35155	2024-09-23	2023-01-17	3.9	4.12	3.88	4.1	0.003	0.59	0.0	0.05	11.40	0.00	2.235	14.76	2.54	2.9	97.1	0.0	-1.18	0.64	0.72	2.12	4.1	0.004	0.73	0.0	0.05	16.05	0.00	2.433	14.76	5.65	5.3	94.7	0.0	-1.15	2.28	0.65	0.73	1.19	3272	420	4	0	1	0	0	logfile
✔	8UUZ	42602	2024-09-23	2023-11-02	3.77	4.50	3.78	8.8	0.003	0.73	0.0	0.04	13.06	0.00	2.213	38.18	12.61	6.6	93.4	0.0	-1.81	0.61	0.33	0.27	8.5	0.004	0.93	0.0	0.05	16.67	0.00	2.504	33.61	3.48	6.6	93.4	0.0	-1.96	1.36	0.75	0.56	0.90	2258	300	2	0	0	0	0	logfile
✔	8PHW	17677	2024-09-23	2023-06-20	3.6	2.46	3.63	2.1	0.005	0.72	0.0	0.04	12.28	0.01	2.209	10.93	6.20	7.5	92.5	0.0	-3.65	0.72	0.72	2.10	2.1	0.003	0.66	0.0	0.04	14.39	0.00	2.589	7.75	4.82	6.0	94.0	0.0	-0.36	0.68	0.71	0.72	2.02	5359	689	5	0	2	0	0	logfile
✔	8SYM	40884	2024-09-23	2023-05-25	3.2	2.36	3.28	1.9	0.004	0.54	0.0	0.04	13.67	0.00	2.253	8.35	0.00	1.8	98.2	0.0	1.78	0.77	0.78	2.57	1.9	0.005	0.61	0.0	0.04	16.60	0.00	2.456	8.68	1.40	2.0	98.0	0.0	1.67	0.41	0.78	0.79	2.40	4486	560	2	0	0	0	0	logfile
✔	8CAQ	16532	2024-09-23	2023-01-24	2.3	2.91	2.61	2.7	0.007	1.18	0.0	0.07	12.14	0.01	2.606	1.37	1.52	5.5	94.5	0.0	-3.61	0.48	0.92	7.17	2.7	0.008	0.72	0.0	0.05	14.17	0.00	2.529	2.05	0.30	2.5	97.5	0.0	-2.02	0.58	0.47	0.93	6.67	2870	375	5	0	0	0	0	logfile
✔	8JVM	36677	2024-09-23	2023-06-28	3.86	4.13	3.89	3.9	0.006	1.08	1.0	0.06	14.54	0.01	2.138	27.03	1.75	16.3	82.1	1.6	-3.56	0.64	0.54	0.94	3.9	0.004	0.90	0.0	0.05	16.95	0.01	2.537	17.17	2.26	14.2	85.4	0.4	-3.23	1.24	0.64	0.53	0.54	3726	498	3	0	0	0	0	logfile
✔	8iZZ	35878	2024-09-23	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.52	1.0	0.14	26.99	0.01	2.261	37.55	25.00	54.5	42.4	3.0	-6.96	3.53	0.30	0.53	-0.29	1342	198	22	0	0	0	0	logfile
✔	8AWT	15696	2024-09-23	2022-08-30	3.0	3.11	2.92	3.1	0.003	0.47	0.0	0.04	9.30	0.00	2.671	4.07	0.00	0.0	100.0	0.0	-4.11	0.52	0.86	6.78	3.1	0.006	0.55	0.0	0.04	10.29	0.00	2.287	0.00	0.00	2.9	97.1	0.0	-4.06	1.02	0.53	0.89	6.78	1910	260	20	0	10	0	0	logfile
✔	8EQF	28537	2024-09-23	2022-10-07	3.16	2.26	3.09	2.1	0.005	0.57	0.0	0.04	14.57	0.00	1.998	5.82	0.00	5.5	94.5	0.0	-0.38	0.75	0.81	3.52	2.0	0.002	0.56	0.0	0.04	14.12	0.00	2.422	4.44	1.10	2.9	97.1	0.0	0.04	0.87	0.76	0.81	3.59	3348	422	4	0	2	0	0	logfile
✔	8EZ7	28729	2024-09-23	2022-10-31	2.6	2.82	2.63	2.8	0.004	0.61	0.0	0.05	18.25	0.00	2.185	8.01	1.32	3.4	96.6	0.0	-0.10	0.51	0.85	3.91	2.8	0.005	0.66	0.0	0.05	15.78	0.00	2.465	7.49	2.26	4.4	95.6	0.0	-0.42	0.24	0.50	0.85	3.99	4927	624	5	0	9	0	0	logfile
✔	8oVK	17218	2024-09-23	2023-04-26	2.88	3.04	1.81	3.2	0.012	1.80	0.0	0.11	14.99	0.01	2.386	4.35	12.90	5.3	94.7	0.0	-1.83	0.53	0.84	5.68	3.1	0.003	0.67	0.0	0.05	18.10	0.00	2.546	9.87	4.84	2.4	97.6	0.0	-3.00	0.65	0.53	0.85	5.87	3060	400	10	0	0	0	0	logfile
✔	8SND	40623	2024-09-23	2023-04-27	3.1	3.43	3.22	3.5	0.007	0.59	0.0	0.04	17.17	0.00	2.254	4.23	0.00	1.6	98.2	0.1	1.20	0.60	0.80	2.97	3.4	0.003	0.48	0.0	0.04	16.97	0.00	2.234	3.56	3.80	2.6	97.3	0.1	1.28	0.30	0.62	0.81	2.98	6090	742	4	0	6	8	0	logfile
✔	8PQ2	17819	2024-09-23	2023-07-10	3.85	4.01	3.65	3.9	0.002	0.51	0.0	0.04	10.37	0.00	2.133	5.53	2.73	8.3	91.7	0.0	-2.04	0.60	0.79	3.14	3.9	0.003	0.56	0.0	0.04	13.11	0.00	2.285	6.20	3.03	8.6	91.1	0.3	-2.15	0.58	0.60	0.79	3.07	5956	390	4	0	1	0	2891	logfile
✔	8PBX	17587	2024-09-23	2023-06-09	3.3	3.77	3.44	3.7	0.005	0.59	0.0	0.04	15.13	0.00	1.897	11.63	0.26	6.5	93.4	0.0	-0.66	0.70	0.75	2.64	3.7	0.005	0.60	0.0	0.04	15.63	0.00	2.305	9.18	1.15	7.3	92.6	0.1	-1.14	0.31	0.67	0.74	2.47	33448	2187	2	0	0	0	16455	logfile
✔	7XRD	33414	2024-09-23	2022-05-10	3.9	3.64	—	3.6	0.002	0.57	0.0	0.04	14.12	0.00	2.012	1.57	0.52	2.0	98.0	0.0	-0.70	0.42	0.75	2.59	3.7	0.003	0.73	0.0	0.05	17.20	0.00	2.015	8.01	1.74	4.0	96.0	0.0	0.41	1.40	0.42	0.77	2.14	5460	656	8	0	8	0	0	logfile
✔	8T05	40935	2024-09-23	2023-05-31	3.22	3.71	3.26	3.7	0.014	1.85	1.0	0.26	16.96	0.01	2.120	2.80	0.93	5.8	93.9	0.3	-2.10	0.45	0.74	3.17	3.6	0.004	0.63	0.0	0.04	16.40	0.01	2.036	6.28	1.68	4.5	95.5	0.0	1.16	1.55	0.58	0.84	2.54	5104	631	6	0	6	0	0	logfile
✔	8PBY	17588	2024-09-23	2023-06-09	3.7	4.03	3.80	4.0	0.003	0.56	0.0	0.04	13.88	0.00	1.886	18.49	0.05	8.4	91.4	0.2	-2.20	0.65	0.59	1.00	4.0	0.004	0.80	1.0	0.04	15.64	0.00	1.756	12.37	0.94	8.3	91.5	0.2	-2.38	1.61	0.67	0.62	0.89	33480	2187	2	0	0	0	16474	logfile
✔	8PoG	17791	2024-09-23	2023-07-04	4.15	4.36	4.10	4.3	0.003	0.59	0.0	0.04	15.83	0.01	2.242	5.44	0.00	2.3	97.7	0.0	0.40	0.77	0.80	—	4.3	0.003	0.57	0.0	0.04	16.33	0.00	2.571	4.62	0.00	3.1	96.9	0.0	2.26	1.93	0.76	0.79	—	4964	624	4	0	0	0	0	logfile
✔	8XD1	38262	2024-09-23	2023-12-10	2.96	3.13	1.04	3.1	0.007	0.83	0.0	0.05	18.20	0.01	2.373	6.23	6.49	3.6	96.4	0.0	0.90	0.42	0.85	3.48	3.1	0.003	0.56	0.0	0.04	17.26	0.01	2.528	6.08	0.88	3.9	96.1	0.0	1.67	0.48	0.42	0.88	3.06	3307	416	2	0	1	9	0	logfile

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