Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	9Eo9	19849	2024-09-23	2024-03-14	3.3	3.30	3.20	3.4	0.016	1.57	0.0	0.10	14.49	0.01	2.638	3.72	5.88	7.3	92.7	0.0	-4.62	0.25	0.84	3.70	3.5	0.003	0.79	0.0	0.05	14.70	0.00	2.549	3.75	2.21	2.0	98.0	0.0	-2.43	1.06	0.29	0.79	3.65	1190	154	2	0	0	0	0	logfile
✔	7BC5	12139	2024-09-23	2020-12-18	3.1	3.06	3.11	3.1	0.005	1.05	0.0	0.05	15.92	0.01	2.314	7.83	0.76	8.2	91.8	0.0	-5.64	0.23	0.62	0.92	3.0	0.003	0.70	0.0	0.04	16.90	0.00	2.565	11.94	3.05	8.2	91.8	0.0	-2.99	1.28	0.23	0.58	1.60	1200	161	1	0	0	0	0	logfile
✔	6oG3	20051	2024-09-23	2019-04-01	4.1	5.37	—	6.5	0.005	1.53	0.0	0.00	0.93	0.00	2.539	0.00	0.00	0.0	99.2	0.8	0.27	0.46	0.48	—	6.0	0.005	1.11	0.0	0.00	8.01	0.00	2.615	51.00	0.00	13.0	87.0	0.0	-1.64	2.16	0.67	0.87	—	1215	396	4	0	9	0	0	logfile
✔	6QJQ	4566	2024-09-23	2019-01-24	3.7	3.99	2.14	4.1	0.021	1.17	0.0	0.11	13.36	0.01	2.499	5.58	0.00	4.0	94.0	2.0	-4.41	0.39	0.75	2.60	4.1	0.004	0.80	0.0	0.05	14.34	0.00	2.639	9.17	1.39	6.7	93.3	0.0	-3.19	2.13	0.37	0.75	2.33	1218	162	6	0	0	0	0	logfile
✔	7V49	31704	2024-09-23	2021-08-12	3.4	3.45	—	4.1	0.007	1.01	0.0	0.06	13.70	0.00	2.279	22.06	0.00	39.7	60.3	0.0	-7.67	0.33	0.73	5.03	4.1	0.003	0.77	0.0	0.05	15.09	0.00	2.628	11.23	6.50	19.0	81.0	0.0	-5.90	1.12	0.31	0.70	5.14	1221	180	3	0	0	0	0	logfile
✔	8P36	17384	2024-09-23	2023-05-17	2.51	3.15	2.51	3.0	0.005	0.63	0.0	0.04	18.62	0.00	2.195	6.55	5.51	2.5	97.5	0.0	1.15	0.34	0.90	2.74	3.0	0.002	0.51	0.0	0.04	18.14	0.00	2.636	5.73	2.36	4.4	95.6	0.0	1.44	0.51	0.30	0.87	2.95	1223	161	2	0	2	0	0	logfile
✔	7V4C	31707	2024-09-23	2021-08-12	3.3	2.93	—	3.4	0.008	0.75	0.0	0.06	12.47	0.00	2.305	12.50	0.00	20.0	80.0	0.0	-6.54	0.40	0.83	2.37	3.4	0.004	0.63	0.0	0.05	17.46	0.00	2.582	4.55	9.09	9.4	90.6	0.0	-4.70	1.15	0.40	0.83	3.46	1287	186	3	0	0	0	0	logfile
✔	6QJH	4563	2024-09-23	2019-01-24	3.3	3.70	2.77	3.6	0.012	1.21	3.0	0.10	14.39	0.01	2.673	1.49	1.96	7.0	93.0	0.0	-3.22	0.36	0.83	2.97	3.6	0.003	0.61	0.0	0.05	14.99	0.00	2.556	1.87	1.96	1.2	98.8	0.0	-2.45	1.52	0.31	0.78	2.67	1302	177	3	0	0	0	0	logfile
✔	8iZZ	35878	2024-09-23	2023-04-09	3.75	3.60	3.46	3.7	0.017	3.95	17.0	0.34	16.30	0.00	1.847	34.96	0.00	15.2	84.8	0.0	-5.84	0.28	0.51	1.98	3.8	0.023	3.52	1.0	0.14	26.99	0.01	2.261	37.55	25.00	54.5	42.4	3.0	-6.96	3.53	0.30	0.53	-0.29	1342	198	22	0	0	0	0	logfile
✔	6TGP	10500	2024-09-23	2019-11-17	4.4	4.64	—	4.3	0.013	1.90	1.0	0.13	12.88	0.01	2.228	7.38	2.08	5.2	94.8	0.0	-3.36	0.45	0.85	—	4.2	0.003	0.72	0.0	0.04	12.59	0.00	2.565	9.59	0.00	4.1	95.9	0.0	1.15	2.28	0.44	0.79	—	1344	176	2	0	0	0	0	logfile
✔	8oTF	17177	2024-09-23	2023-04-20	3.3	3.19	3.03	3.4	0.010	1.53	0.0	0.10	16.15	0.01	2.614	4.72	4.35	6.9	93.1	0.0	-4.64	0.49	0.92	5.83	3.4	0.005	0.62	0.0	0.05	16.00	0.00	2.525	5.08	0.72	0.0	100.0	0.0	-1.06	0.45	0.43	0.90	5.83	1350	186	6	0	0	0	0	logfile
✔	8oVM	17223	2024-09-23	2023-04-26	3.24	3.35	1.89	3.4	0.007	0.99	0.0	0.09	11.00	0.00	2.447	9.68	0.00	2.9	97.1	0.0	-3.60	0.43	0.78	4.59	3.4	0.003	0.75	0.0	0.05	14.25	0.00	2.611	7.82	5.71	6.5	93.5	0.0	-3.33	1.51	0.45	0.80	3.88	1360	180	5	0	0	0	0	logfile
✔	6FU8	4319	2024-09-23	2018-02-26	3.2	4.43	2.98	3.8	0.013	2.11	2.0	0.10	20.18	0.02	2.617	1.47	2.78	11.2	86.2	2.5	-3.87	0.17	0.42	2.23	4.1	0.003	0.76	0.0	0.04	15.90	0.00	2.426	9.53	0.00	8.8	90.0	1.2	-2.74	3.88	0.23	0.62	0.61	1364	82	1	0	0	0	711	logfile
✔	6X0V	21985	2024-09-23	2020-05-17	4.5	4.37	—	4.4	0.003	0.62	1.0	0.04	11.58	0.00	2.285	15.16	4.48	3.5	96.0	0.5	-2.45	0.40	0.74	—	4.4	0.002	0.47	0.0	0.03	12.68	0.00	2.472	16.50	0.00	5.0	95.0	0.0	2.79	1.19	0.40	0.75	—	1384	211	4	0	0	0	62	logfile
✔	8WNW	37674	2024-09-23	2023-10-06	3.5	3.04	3.38	3.4	0.013	1.77	2.0	0.11	13.59	0.01	2.500	4.92	2.31	1.8	98.2	0.0	2.30	0.43	0.69	2.59	3.2	0.002	0.57	0.0	0.04	15.11	0.00	2.444	8.09	1.54	1.2	98.8	0.0	2.56	1.27	0.49	0.75	2.87	1400	173	2	0	3	1	0	logfile
✔	3JBS	6478	2024-09-23	2015-10-13	2.9	3.04	—	3.2	0.010	1.32	0.0	0.06	8.67	0.01	2.510	0.00	0.00	2.9	97.1	0.0	0.51	0.21	0.76	4.15	3.0	0.003	0.64	0.0	0.04	18.35	0.00	2.655	5.51	3.95	1.7	98.3	0.0	0.93	1.82	0.21	0.81	3.78	1401	175	1	0	0	0	0	logfile
✔	7VU8	32126	2024-09-23	2021-11-01	3.0	4.24	3.77	4.4	0.009	1.19	0.0	0.07	16.69	0.01	2.308	9.19	4.64	9.5	90.5	0.0	-5.27	0.39	0.75	3.88	4.3	0.002	0.61	0.0	0.04	19.61	0.01	2.570	3.89	5.30	4.2	95.8	0.0	-1.59	1.14	0.39	0.76	2.75	1433	170	2	0	1	0	0	logfile
✔	8UoA	42432	2024-09-23	2023-10-19	3.8	2.62	3.85	2.1	0.009	1.53	0.0	0.08	22.40	0.01	2.349	7.65	0.00	6.6	93.4	0.0	-1.49	0.50	0.38	1.36	2.1	0.004	0.88	0.0	0.05	13.84	0.00	2.501	11.67	3.70	10.9	89.1	0.0	-2.14	1.17	0.64	0.61	2.33	1440	215	5	0	7	0	0	logfile
✔	7W3T	32293	2024-09-23	2021-11-26	3.59	2.49	3.54	2.2	0.004	0.73	0.0	0.05	17.98	0.01	2.259	8.96	0.00	4.6	95.4	0.0	-2.83	0.76	0.75	4.00	2.2	0.003	0.63	0.0	0.05	15.23	0.00	2.574	7.23	0.62	6.3	93.7	0.0	-2.64	0.31	0.76	0.76	4.12	1455	176	3	0	7	0	0	logfile
✔	8QN7	18509	2024-09-23	2023-09-25	2.7	2.38	2.18	2.7	0.010	1.43	0.0	0.09	13.54	0.01	2.570	5.31	3.45	8.3	91.7	0.0	-3.22	0.45	0.93	6.45	2.6	0.003	0.50	0.0	0.05	18.21	0.00	2.686	2.48	0.69	6.7	93.3	0.0	-3.35	1.19	0.43	0.92	6.22	1455	190	5	0	0	0	0	logfile

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