Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	6WYJ	21966	2024-09-23	2020-05-13	3.7	3.74	—	3.8	0.010	0.64	0.0	0.05	12.33	0.00	2.268	5.08	0.00	5.3	94.7	0.0	-4.80	0.59	0.78	4.37	3.8	0.003	0.60	0.0	0.04	14.47	0.00	2.656	4.76	1.60	1.5	98.5	0.0	1.96	0.60	0.64	0.80	1.44	2949	398	1	0	0	0	0	logfile
✔	7R9o	24330	2024-09-24	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.61	0.0	0.04	11.30	0.00	2.416	6.47	0.74	2.8	97.2	0.0	-0.39	3.44	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✔	6XoW	22282	2024-09-24	2020-07-07	4.6	8.17	4.40	7.0	0.006	1.00	0.0	0.05	13.39	0.01	1.991	24.14	0.23	4.2	95.8	0.0	-0.98	0.87	0.72	—	7.0	0.004	0.77	0.0	0.04	13.33	0.01	2.446	22.13	0.23	4.1	95.9	0.0	-0.08	0.82	0.91	0.82	—	7711	966	1	0	0	0	0	logfile
✔	8QCX	18336	2024-09-23	2023-08-28	3.1	3.36	3.25	3.4	0.003	0.50	0.0	0.04	13.43	0.01	2.275	4.35	0.00	1.0	99.0	0.0	1.06	0.57	0.81	3.18	3.4	0.003	0.56	0.0	0.04	15.79	0.00	2.635	6.44	1.13	1.0	99.0	0.0	2.92	1.21	0.53	0.79	2.32	3283	422	1	0	0	0	0	logfile
✔	7EEi	31077	2024-09-25	2021-03-18	3.6	3.44	—	3.4	0.006	1.09	0.0	0.06	13.71	0.01	1.975	5.03	0.00	0.1	99.9	0.0	-1.90	0.77	0.77	1.99	3.4	0.003	0.66	0.0	0.04	15.46	0.00	2.448	7.19	3.76	6.3	93.7	0.0	0.03	1.22	0.81	0.80	2.14	9825	1400	1	0	0	0	0	logfile
✔	7XUN	33475	2024-09-23	2022-05-19	3.4	3.91	3.41	3.8	0.002	0.57	0.0	0.04	13.72	0.00	2.129	11.02	0.00	4.1	95.9	0.0	-0.92	0.72	0.76	0.33	3.8	0.003	0.67	0.0	0.05	15.95	0.00	2.491	10.41	2.94	4.6	95.4	0.0	-0.41	0.45	0.73	0.78	0.38	5591	741	1	0	0	0	0	logfile
✔	6PZC	20534	2024-09-24	2019-07-31	4.34	4.63	—	4.4	0.008	1.12	0.0	0.06	11.22	0.01	2.137	7.52	0.42	9.7	90.3	0.0	-5.15	0.60	0.54	—	4.4	0.003	0.72	0.0	0.04	10.65	0.00	2.464	8.95	0.00	3.7	96.2	0.1	0.14	2.77	0.70	0.76	—	7456	1173	1	0	0	0	0	logfile
✔	6V6C	21068	2024-09-23	2019-12-04	4.5	4.50	—	4.4	0.003	0.55	0.0	0.04	13.78	0.00	2.226	7.10	0.00	5.1	94.9	0.0	-4.56	0.42	0.82	—	4.5	0.003	0.66	0.0	0.04	14.62	0.00	2.604	5.23	0.00	4.7	95.3	0.0	-0.20	2.01	0.42	0.81	—	4007	497	1	0	0	0	0	logfile
✔	6PZB	20533	2024-09-24	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.004	0.71	0.0	0.04	8.84	0.00	2.526	6.86	0.00	6.3	93.7	0.0	0.83	0.59	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile
✔	7AWA	11928	2024-09-23	2020-11-06	3.5	3.83	—	3.6	0.003	0.64	0.0	0.04	14.22	0.00	2.126	6.77	0.00	5.8	94.2	0.0	-2.52	0.57	0.81	2.14	3.6	0.002	0.51	0.0	0.04	15.12	0.00	2.434	4.70	0.34	3.4	96.6	0.0	-0.61	1.18	0.54	0.80	1.57	5310	328	1	0	0	0	2703	logfile
✔	5LiJ	4054	2024-09-23	2016-07-14	4.2	3.63	—	4.2	0.009	2.92	4.0	0.17	15.82	0.01	2.249	25.64	0.00	10.7	89.3	0.0	-6.36	0.85	0.76	—	3.8	0.005	1.11	0.0	0.04	9.68	0.00	2.554	11.83	0.00	32.7	67.3	0.0	-5.72	0.60	0.86	0.78	—	761	152	1	0	0	0	0	logfile
✔	3KTT	5148	2024-09-23	2009-11-25	4.0	2.33	—	4.5	0.020	2.86	20.0	0.20	15.20	0.01	1.652	179.94	7.82	6.3	89.4	4.3	-0.59	0.27	0.28	—	2.1	0.004	1.16	0.0	0.05	17.38	0.01	2.322	25.05	3.91	9.2	89.8	1.0	-2.48	1.77	0.31	0.41	—	3855	513	1	0	0	0	0	logfile
✔	3J9E	6240	2024-09-23	2015-01-10	3.3	2.66	—	3.3	0.032	3.28	0.0	0.09	21.31	0.02	1.223	20.81	24.26	9.8	87.3	2.9	-3.41	0.77	0.88	3.26	3.3	0.003	0.74	0.0	0.04	17.95	0.00	2.522	8.15	3.89	7.6	91.5	1.0	0.82	1.24	0.74	0.85	2.95	4098	520	1	0	0	0	0	logfile
✔	5Lii	4053	2024-09-23	2016-07-14	3.8	2.99	—	3.9	0.015	2.41	6.0	0.14	12.69	0.01	1.855	42.83	1.41	16.9	81.9	1.2	-6.10	0.55	0.70	3.46	3.9	0.003	0.87	0.0	0.04	16.25	0.01	2.527	10.46	6.01	13.9	85.4	0.7	-3.95	0.80	0.56	0.67	1.49	3098	433	1	0	0	0	0	logfile
✔	7PTX	13642	2024-09-24	2021-09-27	4.03	4.17	—	3.9	0.003	0.76	0.0	0.05	14.08	0.01	2.202	19.18	0.00	10.6	89.4	0.0	-1.97	0.84	0.72	—	3.9	0.004	0.80	0.0	0.05	14.46	0.00	2.400	17.40	0.00	10.2	89.8	0.0	-1.59	0.57	0.85	0.74	—	7653	1000	1	0	0	0	0	logfile
✔	6WU0	21901	2024-09-24	2020-05-04	3.59	3.92	—	3.9	0.003	0.65	0.0	0.04	13.43	0.00	2.211	10.57	0.00	6.0	94.0	0.0	-1.89	0.56	0.63	0.78	3.9	0.004	0.80	0.0	0.04	15.87	0.01	2.351	11.72	3.66	7.5	92.5	0.0	-0.07	0.50	0.54	0.64	0.62	6340	854	1	0	0	0	0	logfile
✔	7R9M	24329	2024-09-24	2021-06-29	4.0	4.58	—	3.9	0.002	0.38	0.0	0.04	4.68	0.00	2.214	3.88	0.00	8.3	90.9	0.8	-4.83	0.85	0.77	—	3.9	0.002	0.54	0.0	0.04	9.17	0.00	2.482	4.79	0.25	2.2	97.8	0.0	-0.26	1.71	0.86	0.79	—	7727	505	1	0	0	0	3939	logfile
✔	7K8C	22726	2024-09-25	2020-09-26	4.27	4.22	—	4.2	0.004	0.84	2.0	0.05	13.70	0.01	2.196	12.83	0.85	3.2	96.8	0.0	0.14	0.47	0.56	—	4.2	0.003	0.81	0.0	0.04	13.48	0.01	2.395	12.12	0.17	4.0	96.0	0.0	0.52	1.19	0.50	0.61	—	5524	723	1	0	0	0	0	logfile
✔	8QSM	18636	2024-09-23	2023-10-10	3.69	4.23	3.52	4.0	0.002	0.48	0.0	0.03	10.37	0.00	2.269	4.15	3.75	3.5	96.5	0.0	2.22	0.55	0.76	0.70	4.0	0.003	0.88	0.0	0.04	15.71	0.00	2.477	14.37	4.83	3.5	96.5	0.0	1.84	1.45	0.56	0.78	1.11	3579	464	1	0	0	0	0	logfile
✔	6XJB	22205	2024-09-25	2020-06-23	3.8	4.06	—	3.9	0.002	0.56	0.0	0.04	13.11	0.00	2.165	9.70	0.00	8.6	91.4	0.0	-3.06	0.88	0.82	1.76	3.9	0.004	0.66	0.0	0.04	15.43	0.00	2.491	10.66	3.43	7.5	92.5	0.0	-1.48	1.82	0.88	0.86	1.89	10070	1277	1	0	0	0	0	logfile

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