Table showing results for September 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7CAH	30331	2024-09-23	2020-06-08	3.9	4.13	—	4.0	0.005	0.92	0.0	0.05	13.68	0.01	2.137	18.79	0.00	19.9	79.8	0.3	-5.76	0.68	0.64	2.37	4.0	0.006	0.90	0.0	0.05	15.03	0.01	2.495	16.93	1.85	18.4	81.6	0.0	-4.19	0.50	0.70	0.66	1.81	2889	404	3	0	0	0	0	logfile
✔	7R9o	24330	2024-09-24	2021-06-29	4.0	4.66	—	4.0	0.002	0.38	0.0	0.04	4.49	0.00	2.252	2.85	0.25	10.5	88.7	0.8	-4.93	0.83	0.71	—	4.0	0.003	0.61	0.0	0.04	11.30	0.00	2.416	6.47	0.74	2.8	97.2	0.0	-0.39	3.44	0.88	0.83	—	7726	505	1	0	0	0	3938	logfile
✘	6o7K	0643	2024-09-25	2019-03-08	4.2	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	-2.76	—	—	—	4.1	0.008	0.77	0.0	0.04	22.50	0.01	2.095	19.34	0.00	8.1	91.4	0.5	-1.78	—	0.90	0.84	—	57748	2934	25	1622	0	0	0	logfile
✔	7MQD	23943	2024-09-28	2021-05-05	3.25	3.21	3.21	3.3	0.003	0.62	0.0	0.05	14.59	0.00	2.456	1.98	0.00	1.0	99.0	0.0	1.04	0.75	0.83	3.89	3.3	0.004	0.51	0.0	0.04	15.71	0.00	2.589	2.33	0.76	1.0	99.0	0.0	1.40	0.30	0.77	0.87	4.39	11960	1592	16	16	0	0	0	logfile
✔	7CZ6	30507	2024-09-23	2020-09-07	4.1	4.04	—	4.1	0.009	1.62	0.0	0.05	8.57	0.01	1.047	61.25	0.00	8.1	91.9	0.0	-1.66	0.68	0.64	—	4.1	0.004	0.83	0.0	0.05	11.31	0.01	2.353	11.27	0.19	5.8	94.2	0.0	-1.88	0.91	0.66	0.74	—	4535	630	5	0	0	0	0	logfile
✔	7SF8	25077	2024-09-24	2021-10-03	2.7	2.25	—	2.1	0.005	0.74	0.0	0.05	13.03	0.00	2.270	4.24	0.14	4.7	95.3	0.0	0.40	0.80	0.80	3.25	2.1	0.005	0.61	0.0	0.04	15.80	0.00	2.558	3.11	1.67	4.7	95.3	0.0	0.95	1.00	0.82	0.84	3.53	6661	860	4	0	0	0	0	logfile
✔	6SHS	10204	2024-09-24	2019-08-08	4.4	4.36	—	4.3	0.009	1.02	0.0	0.06	12.04	0.00	2.341	25.68	0.00	21.1	78.9	0.0	-5.87	0.69	0.62	—	4.4	0.002	0.64	0.0	0.05	12.68	0.00	2.416	3.63	0.00	15.4	84.6	0.0	-5.52	1.68	0.73	0.71	—	7068	480	12	0	0	0	3408	logfile
✔	7SF7	25076	2024-09-24	2021-10-03	2.9	2.36	—	2.2	0.005	0.78	0.0	0.05	12.92	0.00	2.234	6.27	0.56	7.5	92.5	0.0	-1.73	0.75	0.74	2.07	2.1	0.003	0.62	0.0	0.04	15.62	0.00	2.499	5.08	2.68	6.8	93.2	0.0	-1.00	0.50	0.77	0.78	1.49	6776	879	5	0	0	3	0	logfile
✔	6J6K	0690	2024-09-23	2019-01-15	3.3	3.61	—	3.8	0.005	1.22	0.0	0.06	12.69	0.00	2.357	5.53	1.16	6.8	90.6	2.6	-4.75	0.75	0.81	5.62	3.8	0.005	0.83	0.0	0.04	14.31	0.00	2.574	7.13	3.20	8.5	90.6	0.9	-2.48	0.59	0.69	0.79	4.52	3548	476	4	0	0	0	0	logfile
✔	7EGF	31115	2024-09-26	2021-03-24	3.16	3.57	—	3.4	0.008	1.07	5.0	0.08	14.83	0.01	2.209	5.90	2.11	6.4	93.3	0.2	-3.03	0.78	0.77	2.39	3.4	0.005	0.84	0.0	0.05	16.64	0.01	2.365	10.07	3.54	5.4	94.6	0.0	-0.34	0.89	0.73	0.81	1.95	13303	1652	10	0	0	0	0	logfile
✔	6oUT	20205	2024-09-25	2019-05-05	2.6	2.84	—	2.9	0.007	0.93	0.0	0.06	12.60	0.01	2.099	6.06	0.00	4.8	95.2	0.0	-2.10	0.75	0.86	4.03	2.9	0.003	0.61	0.0	0.05	15.10	0.01	2.548	4.90	1.82	3.2	96.8	0.0	-0.07	0.40	0.76	0.88	3.25	11505	1494	6	0	0	226	0	logfile
✔	7QPG	14120	2024-09-25	2022-01-04	3.9	4.08	—	2.8	0.002	0.54	0.0	0.04	10.05	0.00	2.093	6.89	0.00	2.7	97.3	0.0	0.34	0.78	0.58	0.22	2.4	0.002	0.67	0.0	0.04	12.91	0.00	2.430	8.41	0.94	2.6	97.4	0.0	1.16	0.79	0.86	0.71	0.32	57164	7156	6	0	0	0	0	logfile
✔	7D69	30591	2024-09-25	2020-09-29	3.57	3.34	—	3.6	0.009	0.88	0.0	0.05	28.86	0.01	2.062	19.76	0.00	5.2	94.8	0.0	-1.18	0.78	0.80	2.26	3.6	0.003	0.59	0.0	0.03	28.30	0.00	2.531	12.88	2.10	2.4	97.6	0.0	1.80	1.17	0.77	0.79	1.68	10857	727	10	250	0	0	0	logfile
✔	7BZX	30262	2024-09-23	2020-04-28	4.0	4.19	—	3.2	0.019	2.22	9.0	0.12	8.56	0.01	2.485	2.40	0.00	6.6	92.1	1.3	-2.90	0.47	0.25	—	2.9	0.005	1.11	0.0	0.05	8.68	0.00	2.286	14.37	0.00	21.3	78.7	0.0	-4.55	2.97	0.75	0.58	—	5652	1154	2	0	0	0	0	logfile
✔	6PZB	20533	2024-09-24	2019-07-31	4.55	4.69	—	4.5	0.009	1.24	0.0	0.06	8.37	0.01	2.231	3.11	0.00	5.9	94.1	0.0	-3.87	0.62	0.76	—	4.5	0.004	0.71	0.0	0.04	8.84	0.00	2.526	6.86	0.00	6.3	93.7	0.0	0.83	0.59	0.64	0.78	—	7747	1357	1	0	0	0	0	logfile
✔	8DC2	27320	2024-09-24	2022-06-15	2.99	2.48	3.03	3.1	0.003	0.54	0.0	0.04	19.79	0.00	2.216	11.65	0.16	3.0	97.0	0.0	1.17	0.82	0.83	2.49	3.1	0.004	0.66	0.0	0.04	20.97	0.00	2.446	10.91	1.93	3.7	96.3	0.0	0.78	0.37	0.83	0.85	2.68	7296	673	4	87	0	0	0	logfile
✘	8EAo	27792	2024-09-28	2022-08-29	3.2	4.04	3.15	20.0	0.003	0.60	0.0	0.05	14.09	0.00	2.197	10.56	0.10	3.6	96.4	0.0	1.03	0.18	0.04	-0.14	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	—	71628	8964	24	0	0	0	0	logfile
✔	7WD8	32434	2024-09-23	2021-12-21	4.3	3.48	—	3.5	0.002	0.51	0.0	0.04	6.43	0.00	2.246	8.80	0.00	4.1	95.7	0.2	-0.96	0.60	0.61	—	3.5	0.003	0.71	0.0	0.04	12.43	0.00	2.558	10.69	0.00	4.5	95.3	0.2	-0.06	1.60	0.63	0.66	—	4029	524	4	0	0	0	0	logfile
✔	7VVM	32144	2024-09-24	2021-11-06	3.2	2.40	3.19	3.2	0.015	1.76	0.0	0.09	13.51	0.00	2.200	6.43	0.60	5.2	94.8	0.0	-1.17	0.60	0.71	2.55	3.2	0.003	0.56	0.0	0.04	16.21	0.00	2.551	7.58	2.74	3.8	96.2	0.0	0.61	0.56	0.65	0.73	2.32	8507	1133	6	0	0	0	0	logfile
✔	5MZ6	3583	2024-09-24	2017-01-31	3.8	3.83	—	3.8	0.005	1.05	0.0	0.05	11.57	0.01	2.269	8.71	0.70	5.2	94.8	0.0	-5.37	0.65	0.71	2.07	3.8	0.003	0.73	0.0	0.04	15.89	0.00	2.482	12.76	3.13	3.4	96.6	0.0	0.12	0.76	0.74	0.77	0.89	8401	1092	2	0	0	0	0	logfile

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